Wall clock time and date at job start Wed Apr 1 2020 02:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47291 * 2 1 4 4 O 1.33646 * 125.80241 * 270.00010 * 3 2 1 5 5 C 1.34216 * 110.90761 * 179.97438 * 4 3 2 6 6 C 1.34173 * 109.12708 * 0.02562 * 5 4 3 7 7 C 1.36415 * 125.79961 * 90.00004 * 3 2 1 8 8 C 1.47382 * 127.19393 * 359.73699 * 7 3 2 9 9 O 1.21619 * 119.99977 * 0.02562 * 8 7 3 10 10 N 1.34775 * 120.00534 * 179.97438 * 8 7 3 11 11 C 1.46496 * 120.00337 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.88250 * 31.12732 * 11 10 8 13 13 C 1.54912 * 111.00741 * 267.20037 * 11 10 8 14 14 N 1.47427 * 104.82995 * 204.91608 * 13 11 10 15 15 C 1.36936 * 125.64154 * 204.14703 * 14 13 11 16 16 H 1.08004 * 119.99555 * 179.97438 * 15 14 13 17 17 C 1.38812 * 120.00431 * 359.97438 * 15 14 13 18 18 N 1.31615 * 119.99754 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99991 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47147 * 59.99441 * 19 17 15 21 21 H 1.48496 * 109.47117 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46562 * 299.99436 * 19 17 15 23 23 C 1.47020 * 108.70539 * 24.12856 * 14 13 11 24 24 C 1.54331 * 107.27112 * 358.94018 * 23 14 13 25 25 H 1.08998 * 110.71429 * 219.44221 * 24 23 14 26 26 N 1.46500 * 110.86998 * 96.24051 * 24 23 14 27 27 C 1.35307 * 125.86959 * 331.10196 * 26 24 23 28 28 C 1.35355 * 106.17430 * 179.90643 * 27 26 24 29 29 N 1.33767 * 106.49732 * 0.35374 * 28 27 26 30 30 N 1.28637 * 108.88767 * 359.77442 * 29 28 27 31 31 H 1.08994 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46730 * 300.00242 * 1 2 3 33 33 H 1.08997 * 109.46974 * 59.99476 * 1 2 3 34 34 H 1.09000 * 109.47549 * 240.00170 * 2 1 3 35 35 H 1.08999 * 109.47727 * 119.99990 * 2 1 3 36 36 H 1.08002 * 125.44178 * 180.02562 * 5 4 3 37 37 H 1.08005 * 127.02639 * 180.02562 * 6 5 4 38 38 H 0.97003 * 119.99435 * 0.02562 * 10 8 7 39 39 H 1.09004 * 110.36227 * 323.75302 * 13 11 10 40 40 H 1.08995 * 110.36463 * 86.07476 * 13 11 10 41 41 H 0.97001 * 120.00209 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.88243 * 239.51989 * 23 14 13 43 43 H 1.08999 * 109.87899 * 118.35595 * 23 14 13 44 44 H 1.07999 * 126.91682 * 0.02562 * 27 26 24 45 45 H 1.08006 * 126.75416 * 180.12836 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2930 2.1579 -1.0839 5 6 2.7249 3.3810 -0.7389 6 6 2.7580 3.4743 0.5991 7 6 2.2984 2.1732 1.1064 8 6 2.1496 1.7686 2.5158 9 8 1.7501 0.6529 2.7892 10 7 2.4572 2.6345 3.5017 11 6 2.3087 2.2325 4.9025 12 1 2.4842 1.1632 5.0206 13 6 0.9156 2.6313 5.4501 14 7 1.1030 2.7508 6.9075 15 6 0.1192 2.6243 7.8516 16 1 0.3596 2.7292 8.8993 17 6 -1.1869 2.3611 7.4621 18 7 -1.4798 2.2337 6.1853 19 14 -2.5290 2.1893 8.7501 20 1 -2.6334 3.4502 9.5274 21 1 -3.8251 1.9122 8.0804 22 1 -2.1952 1.0691 9.6661 23 6 2.5211 3.0278 7.1794 24 6 3.2513 3.0553 5.8200 25 1 4.2280 2.5776 5.8974 26 7 3.3855 4.4284 5.3274 27 6 2.5408 5.4518 5.5919 28 6 3.0403 6.5301 4.9441 29 7 4.1472 6.1173 4.3167 30 7 4.3242 4.8673 4.5637 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.0015 4.1650 -1.4283 37 1 3.0600 4.3305 1.1841 38 1 2.7761 3.5243 3.2836 39 1 0.6014 3.5861 5.0285 40 1 0.1831 1.8564 5.2240 41 1 -2.3926 2.0502 5.9131 42 1 2.9383 2.2417 7.8085 43 1 2.6218 3.9939 7.6739 44 1 1.6486 5.4160 6.1995 45 1 2.6247 7.5270 4.9326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069917193.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:44 Heat of formation + Delta-G solvation = 97.782617 kcal Electronic energy + Delta-G solvation = -31290.950715 eV Core-core repulsion = 27120.115243 eV Total energy + Delta-G solvation = -4170.835472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.34239 -43.61629 -40.86507 -39.28680 -35.90891 -35.13904 -34.85919 -33.75568 -33.39241 -31.94377 -30.59349 -29.82687 -29.14045 -26.82952 -25.29977 -24.17542 -23.85791 -23.59853 -22.51157 -21.73191 -21.52537 -20.87819 -19.30630 -18.97288 -18.59093 -17.50862 -17.29990 -17.04838 -16.77561 -16.39232 -16.02847 -15.76258 -15.71809 -15.61098 -15.31032 -14.95189 -14.80814 -14.44331 -14.35680 -14.05219 -13.91694 -13.64370 -13.40696 -13.30602 -13.18804 -12.77888 -12.76319 -12.52597 -12.37608 -12.32516 -12.13249 -11.99883 -11.92727 -11.82811 -11.20054 -11.13865 -10.91318 -10.77186 -10.33104 -10.19361 -9.61675 -9.00705 -7.80453 -5.28168 0.25716 0.58865 1.05280 1.24558 1.49671 1.51396 1.57760 1.60059 1.73326 2.06930 2.23026 2.47466 3.15463 3.32432 3.36504 3.48603 3.51466 3.67151 3.71020 3.81215 3.88547 4.11574 4.15141 4.24144 4.26978 4.29600 4.36199 4.39500 4.55554 4.65568 4.68506 4.76511 4.77647 4.90697 4.96761 5.05141 5.11591 5.25456 5.27271 5.29407 5.40031 5.47661 5.61894 5.70509 5.96348 6.19409 6.35133 7.00141 7.08156 7.48948 7.68395 8.26976 9.20213 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009211 B = 0.004383 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.127328 B = 6387.149058 C = 8586.072714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C 0.079 3.921 4 O -0.173 6.173 5 C -0.018 4.018 6 C -0.206 4.206 7 C -0.270 4.270 8 C 0.585 3.415 9 O -0.565 6.565 10 N -0.703 5.703 11 C 0.122 3.878 12 H 0.109 0.891 13 C 0.162 3.838 14 N -0.613 5.613 15 C -0.237 4.237 16 H 0.094 0.906 17 C -0.058 4.058 18 N -0.946 5.946 19 Si 0.978 3.022 20 H -0.275 1.275 21 H -0.301 1.301 22 H -0.277 1.277 23 C 0.130 3.870 24 C 0.131 3.869 25 H 0.151 0.849 26 N -0.276 5.276 27 C -0.029 4.029 28 C -0.055 4.055 29 N -0.290 5.290 30 N -0.110 5.110 31 H 0.085 0.915 32 H 0.030 0.970 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.255 0.745 37 H 0.157 0.843 38 H 0.401 0.599 39 H -0.003 1.003 40 H 0.074 0.926 41 H 0.245 0.755 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.185 0.815 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.283 3.011 -10.876 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C 0.025 3.975 4 O -0.068 6.068 5 C -0.083 4.083 6 C -0.225 4.225 7 C -0.275 4.275 8 C 0.375 3.625 9 O -0.445 6.445 10 N -0.354 5.354 11 C 0.014 3.986 12 H 0.127 0.873 13 C 0.035 3.965 14 N -0.340 5.340 15 C -0.365 4.365 16 H 0.111 0.889 17 C -0.252 4.252 18 N -0.594 5.594 19 Si 0.806 3.194 20 H -0.201 1.201 21 H -0.228 1.228 22 H -0.203 1.203 23 C 0.004 3.996 24 C 0.028 3.972 25 H 0.169 0.831 26 N -0.070 5.070 27 C -0.181 4.181 28 C -0.211 4.211 29 N -0.155 5.155 30 N -0.088 5.088 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.113 0.887 36 H 0.271 0.729 37 H 0.174 0.826 38 H 0.237 0.763 39 H 0.015 0.985 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.202 0.798 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 10.077 1.734 -11.696 15.535 hybrid contribution -1.910 0.789 1.587 2.606 sum 8.167 2.523 -10.109 13.238 Atomic orbital electron populations 1.21654 0.93155 1.03477 1.01404 1.20418 0.97061 0.85694 1.05500 1.23081 0.96368 0.95052 0.82991 1.83787 1.65118 1.23689 1.34242 1.24655 1.01482 0.85904 0.96225 1.22979 1.06671 0.97064 0.95781 1.21193 1.15594 0.97769 0.92910 1.17576 0.76118 0.84050 0.84762 1.90747 1.47570 1.21681 1.84529 1.45483 1.67583 1.17270 1.05078 1.22693 0.96650 0.99537 0.79707 0.87311 1.21912 0.92841 0.98698 0.83037 1.44510 1.03283 1.84144 1.02089 1.19375 0.87115 1.41335 0.88682 0.88853 1.25592 0.99619 1.02068 0.97885 1.70033 1.18299 1.56079 1.15027 0.85162 0.77963 0.78282 0.77958 1.20058 1.22814 1.20273 1.21809 0.84651 1.01164 0.91973 1.23124 1.02537 0.76478 0.95095 0.83111 1.47429 1.16849 1.10471 1.32249 1.23924 1.00033 0.87890 1.06239 1.24052 0.95031 1.01767 1.00287 1.75040 1.17154 1.02446 1.20905 1.78261 1.12630 1.06941 1.11008 0.89648 0.95076 0.91375 0.87025 0.88687 0.72940 0.82576 0.76329 0.98513 0.90779 0.94489 0.90591 0.92891 0.79827 0.76453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.89 71.98 0.71 -2.70 16 2 C -0.05 -1.22 5.93 29.85 0.18 -1.04 16 3 C 0.08 2.18 6.63 25.26 0.17 2.35 16 4 O -0.17 -4.02 10.52 4.51 0.05 -3.97 16 5 C -0.02 -0.34 12.03 66.89 0.80 0.46 16 6 C -0.21 -5.24 10.60 23.65 0.25 -4.99 16 7 C -0.27 -8.58 6.31 -18.99 -0.12 -8.70 16 8 C 0.59 22.09 7.81 86.65 0.68 22.77 16 9 O -0.56 -24.31 14.49 -4.09 -0.06 -24.37 16 10 N -0.70 -25.07 5.16 -439.25 -2.27 -27.33 16 11 C 0.12 4.54 3.29 46.39 0.15 4.69 16 12 H 0.11 4.27 7.54 -2.39 -0.02 4.25 16 13 C 0.16 7.50 5.17 86.86 0.45 7.95 16 14 N -0.61 -27.54 3.39 -691.97 -2.35 -29.89 16 15 C -0.24 -11.88 10.27 84.03 0.86 -11.02 16 16 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 17 C -0.06 -3.10 5.49 84.86 0.47 -2.64 16 18 N -0.95 -54.51 10.09 21.65 0.22 -54.29 16 19 Si 0.98 43.35 29.55 68.60 2.03 45.37 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 23 C 0.13 4.38 6.29 86.73 0.55 4.92 16 24 C 0.13 3.98 3.96 46.18 0.18 4.16 16 25 H 0.15 3.74 8.14 -2.39 -0.02 3.72 16 26 N -0.28 -8.41 2.38 -321.53 -0.77 -9.17 16 27 C -0.03 -0.88 9.36 83.49 0.78 -0.10 16 28 C -0.05 -1.45 12.05 83.73 1.01 -0.44 16 29 N -0.29 -8.84 12.41 -58.25 -0.72 -9.56 16 30 N -0.11 -3.44 12.29 37.02 0.45 -2.98 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.11 1.97 8.14 -2.39 -0.02 1.96 16 35 H 0.09 2.73 6.50 -2.39 -0.02 2.71 16 36 H 0.25 2.22 8.06 -2.91 -0.02 2.19 16 37 H 0.16 3.78 7.74 -2.91 -0.02 3.76 16 38 H 0.40 13.51 5.97 -92.71 -0.55 12.95 16 39 H 0.00 -0.15 7.58 -2.38 -0.02 -0.17 16 40 H 0.07 4.22 5.87 -2.39 -0.01 4.21 16 41 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.05 1.71 7.19 -2.39 -0.02 1.70 16 44 H 0.18 5.93 7.72 -2.91 -0.02 5.90 16 45 H 0.22 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -68.57 373.91 4.19 -64.39 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.48 Total: 36.14 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 7.12 Total: 15.67 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -5.43 Total: -133.23 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.01 Total: -28.34 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -68.57 4.19 -64.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069917193.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.169 kcal (2) G-P(sol) polarization free energy of solvation -68.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds