Wall clock time and date at job start Wed Apr 1 2020 03:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47145 * 2 1 4 4 H 1.09005 * 109.87130 * 304.64673 * 3 2 1 5 5 C 1.54321 * 110.01214 * 183.54444 * 3 2 1 6 6 H 1.09000 * 110.71808 * 336.85700 * 5 3 2 7 7 N 1.46498 * 110.71752 * 99.95653 * 5 3 2 8 8 C 1.34780 * 119.99843 * 204.99764 * 7 5 3 9 9 O 1.21578 * 119.99647 * 0.02562 * 8 7 5 10 10 C 1.47673 * 120.00176 * 180.02562 * 8 7 5 11 11 C 1.39917 * 120.38906 * 359.72257 * 10 8 7 12 12 N 1.31451 * 121.14061 * 179.76606 * 11 10 8 13 13 C 1.32475 * 121.80617 * 0.50442 * 12 11 10 14 14 N 1.37870 * 133.44959 * 179.74079 * 13 12 11 15 15 H 0.97008 * 126.25105 * 359.97438 * 14 13 12 16 16 C 1.36516 * 107.50246 * 180.02562 * 14 13 12 17 17 O 1.35265 * 125.02738 * 180.02562 * 16 14 13 18 18 N 1.30722 * 109.95007 * 359.97438 * 16 14 13 19 19 C 1.35896 * 109.40164 * 0.02562 * 18 16 14 20 20 C 1.39406 * 133.63186 * 179.97438 * 19 18 16 21 21 C 1.55158 * 102.94187 * 218.31883 * 5 3 2 22 22 C 1.54694 * 101.67611 * 35.33689 * 21 5 3 23 23 N 1.47025 * 109.87979 * 65.65748 * 3 2 1 24 24 C 1.36932 * 125.64979 * 298.47879 * 23 3 2 25 25 H 1.08007 * 120.00206 * 333.99347 * 24 23 3 26 26 C 1.38820 * 120.00394 * 153.99281 * 24 23 3 27 27 N 1.31613 * 119.99364 * 335.06962 * 26 24 23 28 28 Si 1.86795 * 120.00335 * 155.06321 * 26 24 23 29 29 H 1.48504 * 109.46938 * 90.00063 * 28 26 24 30 30 H 1.48500 * 109.47146 * 330.00675 * 28 26 24 31 31 H 1.48498 * 109.47279 * 210.00461 * 28 26 24 32 32 H 1.08994 * 109.47142 * 291.63754 * 1 2 3 33 33 H 1.08999 * 109.47427 * 51.64257 * 1 2 3 34 34 H 1.09002 * 109.46654 * 171.63819 * 1 2 3 35 35 H 1.08997 * 109.47178 * 240.00187 * 2 1 3 36 36 H 1.08999 * 109.47476 * 120.00225 * 2 1 3 37 37 H 0.96993 * 120.00326 * 24.99735 * 7 5 3 38 38 H 1.07993 * 119.42651 * 359.97438 * 11 10 8 39 39 H 0.96702 * 114.00060 * 89.99245 * 17 16 14 40 40 H 1.08000 * 120.97322 * 0.02562 * 20 19 18 41 41 H 1.09000 * 111.00471 * 153.57731 * 21 5 3 42 42 H 1.09000 * 111.00191 * 277.42987 * 21 5 3 43 43 H 1.09003 * 110.39292 * 204.36381 * 22 21 5 44 44 H 1.08998 * 110.24051 * 82.11079 * 22 21 5 45 45 H 0.96998 * 120.00836 * 353.73239 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6141 1.9861 -0.8434 5 6 3.5806 1.4580 -0.0896 6 1 3.9971 0.5164 0.2680 7 7 4.0172 1.7279 -1.4618 8 6 5.2271 1.3057 -1.8793 9 8 5.9560 0.7006 -1.1172 10 6 5.6675 1.5782 -3.2622 11 6 4.8329 2.2689 -4.1477 12 7 5.2118 2.5234 -5.3804 13 6 6.3898 2.1324 -5.8436 14 7 7.0185 2.2599 -7.0640 15 1 6.6598 2.6992 -7.8510 16 6 8.2377 1.6541 -6.9629 17 8 9.1490 1.5723 -7.9592 18 7 8.3947 1.1655 -5.7607 19 6 7.2868 1.4275 -5.0187 20 6 6.9206 1.1443 -3.7037 21 6 3.9716 2.6283 0.8511 22 6 2.9012 2.5086 1.9614 23 7 1.6694 2.1039 1.2597 24 6 0.3916 2.3143 1.7047 25 1 -0.4215 2.3867 0.9976 26 6 0.1412 2.4344 3.0649 27 7 0.9607 1.8849 3.9358 28 14 -1.3587 3.3761 3.6589 29 1 -2.5102 2.4464 3.7816 30 1 -1.6889 4.4469 2.6844 31 1 -1.0695 3.9836 4.9827 32 1 -0.3633 0.3789 0.9552 33 1 -0.3634 0.6377 -0.8058 34 1 -0.3633 -1.0168 -0.1495 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 3.4355 2.2104 -2.0698 38 1 3.8620 2.6015 -3.8115 39 1 9.7714 2.3120 -7.9846 40 1 7.5858 0.6056 -3.0452 41 1 4.9739 2.4864 1.2553 42 1 3.8913 3.5862 0.3372 43 1 2.7578 3.4693 2.4559 44 1 3.1925 1.7479 2.6857 45 1 1.6874 1.3205 3.6290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087632569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:08 Heat of formation + Delta-G solvation = 40.230813 kcal Electronic energy + Delta-G solvation = -29672.050878 eV Core-core repulsion = 25498.719772 eV Total energy + Delta-G solvation = -4173.331106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -42.89973 -40.25211 -39.02373 -37.94513 -37.26722 -34.40591 -34.16754 -32.60799 -32.19391 -31.64331 -29.93978 -28.53147 -26.93901 -24.95856 -24.14093 -23.99433 -22.39511 -21.87702 -21.06009 -20.40803 -19.80250 -19.66451 -18.67644 -18.23431 -17.38147 -17.12759 -16.70827 -16.18018 -15.77420 -15.21629 -14.70128 -14.56168 -14.43404 -14.02717 -13.80606 -13.58938 -13.45724 -13.16506 -12.93168 -12.89773 -12.74211 -12.42211 -12.12862 -11.71338 -11.63412 -11.48202 -11.10725 -10.95433 -10.76424 -10.52563 -10.33311 -10.13338 -10.12208 -10.04341 -9.84598 -9.62234 -9.43564 -9.40274 -9.00777 -8.78595 -8.40328 -6.90905 -6.05689 -3.22686 0.19971 0.36949 1.53503 2.01290 2.69755 2.85906 3.20126 3.48637 3.51349 3.52996 3.67634 3.73253 4.14845 4.34068 4.40245 4.50141 4.58197 4.83578 5.11153 5.18761 5.30853 5.34569 5.41654 5.56144 5.58629 5.68381 5.89523 5.91740 5.97243 5.98703 6.03991 6.15116 6.27305 6.35733 6.48211 6.57656 6.65686 6.76451 6.84359 6.93828 7.01321 7.03733 7.09947 7.28098 7.33506 7.52415 7.86628 8.18584 8.49165 9.01443 9.78808 10.37136 11.22288 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.027134 B = 0.002104 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.655132 B =13304.349828 C =13512.321183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.156 3.844 4 H 0.037 0.963 5 C 0.135 3.865 6 H 0.098 0.902 7 N -0.708 5.708 8 C 0.567 3.433 9 O -0.532 6.532 10 C -0.190 4.190 11 C 0.178 3.822 12 N -0.481 5.481 13 C 0.268 3.732 14 N -0.587 5.587 15 H 0.430 0.570 16 C 0.466 3.534 17 O -0.436 6.436 18 N -0.467 5.467 19 C 0.005 3.995 20 C 0.048 3.952 21 C -0.145 4.145 22 C 0.143 3.857 23 N -0.590 5.590 24 C -0.325 4.325 25 H 0.063 0.937 26 C -0.024 4.024 27 N -0.913 5.913 28 Si 1.065 2.935 29 H -0.294 1.294 30 H -0.292 1.292 31 H -0.287 1.287 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.398 0.602 38 H 0.174 0.826 39 H 0.415 0.585 40 H 0.160 0.840 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.030 0.970 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.329 2.606 -22.539 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.049 3.951 4 H 0.055 0.945 5 C 0.030 3.970 6 H 0.116 0.884 7 N -0.358 5.358 8 C 0.352 3.648 9 O -0.410 6.410 10 C -0.198 4.198 11 C 0.009 3.991 12 N -0.193 5.193 13 C 0.031 3.969 14 N -0.214 5.214 15 H 0.270 0.730 16 C 0.160 3.840 17 O -0.238 6.238 18 N -0.198 5.198 19 C -0.115 4.115 20 C 0.021 3.979 21 C -0.184 4.184 22 C 0.017 3.983 23 N -0.316 5.316 24 C -0.453 4.453 25 H 0.081 0.919 26 C -0.227 4.227 27 N -0.553 5.553 28 Si 0.895 3.105 29 H -0.222 1.222 30 H -0.219 1.219 31 H -0.212 1.212 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.233 0.767 38 H 0.191 0.809 39 H 0.274 0.726 40 H 0.178 0.822 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.007 2.215 -21.083 24.363 hybrid contribution 0.486 0.242 -2.078 2.148 sum 12.493 2.458 -23.161 26.430 Atomic orbital electron populations 1.21892 0.95653 0.98856 1.04205 1.21880 0.97071 0.97545 0.99737 1.21209 0.89582 0.92425 0.91929 0.94544 1.22174 0.95686 0.99445 0.79647 0.88372 1.45943 1.17308 1.57815 1.14759 1.17737 0.81916 0.79248 0.85859 1.90807 1.53710 1.40917 1.55533 1.20755 0.96654 1.05936 0.96430 1.22811 0.98507 0.91585 0.86171 1.66389 1.14145 1.22454 1.16361 1.18720 0.92515 0.99221 0.86403 1.43031 1.16336 1.49583 1.12464 0.72956 1.20171 0.82499 0.93800 0.87539 1.84865 1.42978 1.49895 1.46041 1.70753 1.24436 1.24337 1.00265 1.19328 0.92525 1.03985 0.95659 1.20872 0.93976 0.91679 0.91403 1.23169 0.99485 0.97695 0.98064 1.21512 0.85324 0.98613 0.92832 1.44480 1.01939 1.65034 1.20123 1.19596 0.83657 1.49413 0.92652 0.91923 1.25827 1.03986 1.00573 0.92318 1.70725 1.18691 1.29540 1.36340 0.83535 0.74940 0.76249 0.75773 1.22188 1.21901 1.21243 0.88970 0.94284 0.95237 0.94235 0.92531 0.76694 0.80933 0.72602 0.82232 0.91464 0.91521 0.93125 0.95206 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.96 37.16 0.33 -2.51 16 2 C -0.12 -2.30 5.47 -26.73 -0.15 -2.44 16 3 C 0.16 2.95 2.99 -66.95 -0.20 2.75 16 4 H 0.04 0.67 7.72 -51.93 -0.40 0.27 16 5 C 0.13 2.26 2.85 -66.10 -0.19 2.07 16 6 H 0.10 1.81 7.26 -51.93 -0.38 1.43 16 7 N -0.71 -9.34 5.13 -53.03 -0.27 -9.61 16 8 C 0.57 7.84 7.77 -12.41 -0.10 7.75 16 9 O -0.53 -9.27 16.05 5.30 0.08 -9.19 16 10 C -0.19 -2.15 5.89 -104.85 -0.62 -2.77 16 11 C 0.18 1.72 10.69 -17.09 -0.18 1.54 16 12 N -0.48 -5.03 10.36 -11.91 -0.12 -5.15 16 13 C 0.27 2.76 8.45 -155.42 -1.31 1.45 16 14 N -0.59 -4.21 6.23 -13.35 -0.08 -4.29 16 15 H 0.43 1.71 8.96 -40.82 -0.37 1.35 16 16 C 0.47 3.69 9.39 -88.83 -0.83 2.86 16 17 O -0.44 -2.04 13.63 -17.49 -0.24 -2.28 16 18 N -0.47 -5.20 11.32 -12.21 -0.14 -5.34 16 19 C 0.00 0.06 7.22 -84.67 -0.61 -0.56 16 20 C 0.05 0.56 9.75 -38.58 -0.38 0.19 16 21 C -0.14 -2.56 6.76 -24.70 -0.17 -2.73 16 22 C 0.14 3.16 5.56 -2.64 -0.01 3.15 16 23 N -0.59 -13.66 2.92 -162.70 -0.48 -14.14 16 24 C -0.33 -8.39 7.23 -15.06 -0.11 -8.50 16 25 H 0.06 1.62 7.22 -52.48 -0.38 1.24 16 26 C -0.02 -0.65 5.18 -17.43 -0.09 -0.74 16 27 N -0.91 -26.55 13.06 55.49 0.72 -25.83 16 28 Si 1.07 24.48 29.99 -169.99 -5.10 19.38 16 29 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 30 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 31 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 32 H 0.09 2.08 5.53 -51.93 -0.29 1.79 16 33 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.40 4.14 6.40 -40.82 -0.26 3.88 16 38 H 0.17 1.19 6.39 -52.49 -0.34 0.86 16 39 H 0.41 -0.39 9.06 45.56 0.41 0.02 16 40 H 0.16 1.84 7.72 -52.49 -0.41 1.44 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.03 0.72 6.73 -51.93 -0.35 0.37 16 45 H 0.27 7.92 6.19 -40.82 -0.25 7.67 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -34.65 370.32 -9.41 -44.06 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.75 Total: 5.31 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -4.61 Total: 1.50 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -0.37 Total: -64.36 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.15 Total: -11.47 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.10 Total: 19.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.65 -9.41 -44.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087632569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.287 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds