Wall clock time and date at job start Wed Apr 1 2020 03:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47145 * 2 1 4 4 H 1.09005 * 109.87130 * 304.64673 * 3 2 1 5 5 C 1.54321 * 110.01214 * 183.54444 * 3 2 1 6 6 H 1.09000 * 110.71808 * 336.85700 * 5 3 2 7 7 N 1.46498 * 110.71752 * 99.95653 * 5 3 2 8 8 C 1.34780 * 119.99843 * 204.99764 * 7 5 3 9 9 O 1.21578 * 119.99647 * 0.02562 * 8 7 5 10 10 C 1.47673 * 120.00176 * 180.02562 * 8 7 5 11 11 C 1.39917 * 120.38906 * 359.72257 * 10 8 7 12 12 N 1.31451 * 121.14061 * 179.76606 * 11 10 8 13 13 C 1.32475 * 121.80617 * 0.50442 * 12 11 10 14 14 N 1.37870 * 133.44959 * 179.74079 * 13 12 11 15 15 H 0.97008 * 126.25105 * 359.97438 * 14 13 12 16 16 C 1.36516 * 107.50246 * 180.02562 * 14 13 12 17 17 O 1.35265 * 125.02738 * 180.02562 * 16 14 13 18 18 N 1.30722 * 109.95007 * 359.97438 * 16 14 13 19 19 C 1.35896 * 109.40164 * 0.02562 * 18 16 14 20 20 C 1.39406 * 133.63186 * 179.97438 * 19 18 16 21 21 C 1.55158 * 102.94187 * 218.31883 * 5 3 2 22 22 C 1.54694 * 101.67611 * 35.33689 * 21 5 3 23 23 N 1.47025 * 109.87979 * 65.65748 * 3 2 1 24 24 C 1.36932 * 125.64979 * 298.47879 * 23 3 2 25 25 H 1.08007 * 120.00206 * 333.99347 * 24 23 3 26 26 C 1.38820 * 120.00394 * 153.99281 * 24 23 3 27 27 N 1.31613 * 119.99364 * 335.06962 * 26 24 23 28 28 Si 1.86795 * 120.00335 * 155.06321 * 26 24 23 29 29 H 1.48504 * 109.46938 * 90.00063 * 28 26 24 30 30 H 1.48500 * 109.47146 * 330.00675 * 28 26 24 31 31 H 1.48498 * 109.47279 * 210.00461 * 28 26 24 32 32 H 1.08994 * 109.47142 * 291.63754 * 1 2 3 33 33 H 1.08999 * 109.47427 * 51.64257 * 1 2 3 34 34 H 1.09002 * 109.46654 * 171.63819 * 1 2 3 35 35 H 1.08997 * 109.47178 * 240.00187 * 2 1 3 36 36 H 1.08999 * 109.47476 * 120.00225 * 2 1 3 37 37 H 0.96993 * 120.00326 * 24.99735 * 7 5 3 38 38 H 1.07993 * 119.42651 * 359.97438 * 11 10 8 39 39 H 0.96702 * 114.00060 * 89.99245 * 17 16 14 40 40 H 1.08000 * 120.97322 * 0.02562 * 20 19 18 41 41 H 1.09000 * 111.00471 * 153.57731 * 21 5 3 42 42 H 1.09000 * 111.00191 * 277.42987 * 21 5 3 43 43 H 1.09003 * 110.39292 * 204.36381 * 22 21 5 44 44 H 1.08998 * 110.24051 * 82.11079 * 22 21 5 45 45 H 0.96998 * 120.00836 * 353.73239 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6141 1.9861 -0.8434 5 6 3.5806 1.4580 -0.0896 6 1 3.9971 0.5164 0.2680 7 7 4.0172 1.7279 -1.4618 8 6 5.2271 1.3057 -1.8793 9 8 5.9560 0.7006 -1.1172 10 6 5.6675 1.5782 -3.2622 11 6 4.8329 2.2689 -4.1477 12 7 5.2118 2.5234 -5.3804 13 6 6.3898 2.1324 -5.8436 14 7 7.0185 2.2599 -7.0640 15 1 6.6598 2.6992 -7.8510 16 6 8.2377 1.6541 -6.9629 17 8 9.1490 1.5723 -7.9592 18 7 8.3947 1.1655 -5.7607 19 6 7.2868 1.4275 -5.0187 20 6 6.9206 1.1443 -3.7037 21 6 3.9716 2.6283 0.8511 22 6 2.9012 2.5086 1.9614 23 7 1.6694 2.1039 1.2597 24 6 0.3916 2.3143 1.7047 25 1 -0.4215 2.3867 0.9976 26 6 0.1412 2.4344 3.0649 27 7 0.9607 1.8849 3.9358 28 14 -1.3587 3.3761 3.6589 29 1 -2.5102 2.4464 3.7816 30 1 -1.6889 4.4469 2.6844 31 1 -1.0695 3.9836 4.9827 32 1 -0.3633 0.3789 0.9552 33 1 -0.3634 0.6377 -0.8058 34 1 -0.3633 -1.0168 -0.1495 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 3.4355 2.2104 -2.0698 38 1 3.8620 2.6015 -3.8115 39 1 9.7714 2.3120 -7.9846 40 1 7.5858 0.6056 -3.0452 41 1 4.9739 2.4864 1.2553 42 1 3.8913 3.5862 0.3372 43 1 2.7578 3.4693 2.4559 44 1 3.1925 1.7479 2.6857 45 1 1.6874 1.3205 3.6290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087632569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:07 Heat of formation + Delta-G solvation = 11.696293 kcal Electronic energy + Delta-G solvation = -29673.288228 eV Core-core repulsion = 25498.719772 eV Total energy + Delta-G solvation = -4174.568456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.60265 -41.35243 -39.99393 -39.20874 -37.91572 -35.83839 -34.94251 -34.28347 -33.71304 -32.57133 -30.96974 -30.09583 -28.43796 -26.45797 -25.26544 -24.85905 -23.50812 -23.07879 -22.29750 -21.75995 -21.23631 -20.40077 -19.47242 -19.26480 -19.09261 -17.93194 -17.67927 -17.12609 -16.79748 -16.24507 -16.00821 -15.88136 -15.53944 -15.49238 -15.16361 -14.93663 -14.72630 -14.53191 -14.26870 -13.98898 -13.72138 -13.44501 -13.41245 -13.29606 -12.79168 -12.64989 -12.51000 -12.45056 -12.18820 -12.13189 -11.86701 -11.80567 -11.70018 -11.52438 -11.35017 -11.28990 -10.49021 -10.39991 -10.28291 -10.01568 -9.71377 -8.87163 -8.13298 -5.27939 -0.56841 -0.41782 0.93833 1.34966 1.62535 1.70024 1.70728 1.85701 1.87762 2.44339 2.63803 2.71333 3.05566 3.30994 3.42756 3.46413 3.60303 3.69149 3.71321 3.79724 3.81293 4.07887 4.17015 4.32924 4.43945 4.46914 4.50908 4.61797 4.71343 4.77186 4.81835 4.93475 4.98983 5.04888 5.11325 5.15625 5.18730 5.27660 5.37034 5.58064 5.65368 5.69155 5.89368 6.33244 6.40079 6.43957 6.46047 6.61894 7.00827 7.11578 7.79546 8.41133 9.12952 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.027134 B = 0.002104 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.655132 B =13304.349828 C =13512.321183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.154 3.846 4 H 0.059 0.941 5 C 0.152 3.848 6 H 0.081 0.919 7 N -0.694 5.694 8 C 0.574 3.426 9 O -0.572 6.572 10 C -0.192 4.192 11 C 0.186 3.814 12 N -0.484 5.484 13 C 0.264 3.736 14 N -0.571 5.571 15 H 0.446 0.554 16 C 0.488 3.512 17 O -0.433 6.433 18 N -0.508 5.508 19 C -0.010 4.010 20 C 0.039 3.961 21 C -0.129 4.129 22 C 0.147 3.853 23 N -0.607 5.607 24 C -0.309 4.309 25 H 0.066 0.934 26 C -0.083 4.083 27 N -0.951 5.951 28 Si 1.111 2.889 29 H -0.286 1.286 30 H -0.272 1.272 31 H -0.298 1.298 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.027 0.973 37 H 0.415 0.585 38 H 0.203 0.797 39 H 0.441 0.559 40 H 0.150 0.850 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.025 0.975 44 H 0.001 0.999 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 3.699 -26.360 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C 0.048 3.952 4 H 0.076 0.924 5 C 0.046 3.954 6 H 0.099 0.901 7 N -0.345 5.345 8 C 0.361 3.639 9 O -0.452 6.452 10 C -0.200 4.200 11 C 0.017 3.983 12 N -0.196 5.196 13 C 0.026 3.974 14 N -0.200 5.200 15 H 0.290 0.710 16 C 0.181 3.819 17 O -0.239 6.239 18 N -0.240 5.240 19 C -0.130 4.130 20 C 0.011 3.989 21 C -0.168 4.168 22 C 0.021 3.979 23 N -0.333 5.333 24 C -0.438 4.438 25 H 0.083 0.917 26 C -0.279 4.279 27 N -0.594 5.594 28 Si 0.937 3.063 29 H -0.213 1.213 30 H -0.198 1.198 31 H -0.225 1.225 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.254 0.746 38 H 0.220 0.780 39 H 0.305 0.695 40 H 0.168 0.832 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.044 0.956 44 H 0.019 0.981 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.755 3.350 -25.013 27.840 hybrid contribution 0.696 -0.141 -1.101 1.310 sum 12.451 3.208 -26.114 29.108 Atomic orbital electron populations 1.21772 0.95679 1.00153 1.02396 1.21833 0.96957 0.97320 0.99809 1.21358 0.91062 0.92412 0.90401 0.92357 1.21722 0.94081 0.98250 0.81372 0.90091 1.45646 1.17549 1.57889 1.13449 1.18004 0.81317 0.78126 0.86448 1.90799 1.54835 1.42701 1.56863 1.20451 0.97022 1.07337 0.95172 1.23197 0.99066 0.90483 0.85562 1.66511 1.14041 1.22600 1.16487 1.18899 0.92364 0.98864 0.87254 1.42977 1.15807 1.49008 1.12180 0.71009 1.20208 0.82854 0.91711 0.87086 1.84849 1.42944 1.51514 1.44551 1.70725 1.25030 1.26482 1.01788 1.19404 0.93204 1.04611 0.95772 1.20867 0.94224 0.91992 0.91798 1.23024 0.98051 0.99032 0.96711 1.21353 0.86595 0.96266 0.93724 1.44702 1.01508 1.65868 1.21188 1.19798 0.84779 1.46729 0.92480 0.91663 1.27034 1.05981 1.01682 0.93241 1.70842 1.19888 1.31826 1.36836 0.82909 0.72542 0.75711 0.75153 1.21290 1.19761 1.22452 0.92962 0.92741 0.93381 0.91161 0.95366 0.74589 0.78012 0.69461 0.83208 0.90908 0.89704 0.95643 0.98143 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 8.96 71.98 0.65 -4.59 16 2 C -0.12 -4.34 5.47 30.60 0.17 -4.17 16 3 C 0.15 5.61 2.99 45.34 0.14 5.74 16 4 H 0.06 1.93 7.72 -2.38 -0.02 1.91 16 5 C 0.15 4.91 2.85 46.18 0.13 5.04 16 6 H 0.08 2.98 7.26 -2.39 -0.02 2.96 16 7 N -0.69 -16.61 5.13 -439.94 -2.26 -18.87 16 8 C 0.57 15.06 7.77 86.74 0.67 15.74 16 9 O -0.57 -19.85 16.05 -3.96 -0.06 -19.91 16 10 C -0.19 -4.05 5.89 -20.01 -0.12 -4.17 16 11 C 0.19 3.05 10.69 85.16 0.91 3.96 16 12 N -0.48 -8.74 10.36 -191.61 -1.99 -10.73 16 13 C 0.26 4.85 8.45 133.83 1.13 5.98 16 14 N -0.57 -6.63 6.23 -306.99 -1.91 -8.54 16 15 H 0.45 2.10 8.96 -92.70 -0.83 1.27 16 16 C 0.49 6.58 9.39 179.72 1.69 8.27 16 17 O -0.43 -2.76 13.63 -85.49 -1.16 -3.92 16 18 N -0.51 -10.72 11.32 -306.40 -3.47 -14.19 16 19 C -0.01 -0.23 7.22 39.42 0.28 0.06 16 20 C 0.04 0.89 9.75 22.92 0.22 1.11 16 21 C -0.13 -4.49 6.76 31.91 0.22 -4.27 16 22 C 0.15 6.69 5.56 86.78 0.48 7.17 16 23 N -0.61 -28.27 2.92 -668.65 -1.95 -30.22 16 24 C -0.31 -16.02 7.23 84.04 0.61 -15.42 16 25 H 0.07 3.32 7.22 -2.91 -0.02 3.30 16 26 C -0.08 -4.61 5.18 84.86 0.44 -4.17 16 27 N -0.95 -57.67 13.06 21.65 0.28 -57.39 16 28 Si 1.11 50.03 29.99 68.60 2.06 52.08 16 29 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 30 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 31 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 32 H 0.05 2.35 5.53 -2.39 -0.01 2.33 16 33 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.42 7.06 6.40 -92.71 -0.59 6.47 16 38 H 0.20 1.93 6.39 -2.91 -0.02 1.91 16 39 H 0.44 -2.30 9.06 -74.06 -0.67 -2.97 16 40 H 0.15 3.60 7.72 -2.91 -0.02 3.58 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.00 0.04 6.73 -2.39 -0.02 0.02 16 45 H 0.25 15.78 6.19 -92.71 -0.57 15.20 16 Total: -1.00 -78.16 370.32 -3.66 -81.82 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -0.81 Total: 13.58 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 7.62 Total: 16.28 kcal Atomic # 7 Polarization: -128.64 SS G_CDS: -11.29 Total: -139.93 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -1.23 Total: -23.83 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 2.06 Total: 52.08 kcal Total: -78.16 -3.66 -81.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087632569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.512 kcal (2) G-P(sol) polarization free energy of solvation -78.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds