Wall clock time and date at job start Wed Apr 1 2020 03:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46923 * 2 1 4 4 H 1.08994 * 109.99990 * 303.69998 * 3 2 1 5 5 C 1.54335 * 109.99176 * 182.65904 * 3 2 1 6 6 H 1.09003 * 110.66652 * 337.04783 * 5 3 2 7 7 N 1.46492 * 110.84890 * 100.20342 * 5 3 2 8 8 C 1.34781 * 120.00106 * 200.14372 * 7 5 3 9 9 O 1.21555 * 119.99796 * 0.02562 * 8 7 5 10 10 C 1.47847 * 119.99919 * 179.97438 * 8 7 5 11 11 C 1.39727 * 119.43401 * 179.73236 * 10 8 7 12 12 C 1.36997 * 119.58776 * 179.72783 * 11 10 8 13 13 C 1.39890 * 118.37197 * 0.57085 * 12 11 10 14 14 N 1.35420 * 133.68421 * 179.69908 * 13 12 11 15 15 C 1.30936 * 109.56769 * 179.97438 * 14 13 12 16 16 O 1.35187 * 124.99813 * 179.97438 * 15 14 13 17 17 N 1.36384 * 110.00753 * 359.97438 * 15 14 13 18 18 H 0.96999 * 126.32520 * 180.02562 * 17 15 14 19 19 C 1.38255 * 107.35970 * 0.02562 * 17 15 14 20 20 N 1.31769 * 133.71794 * 179.97438 * 19 17 15 21 21 C 1.55160 * 103.01972 * 218.66745 * 5 3 2 22 22 C 1.54919 * 101.57959 * 35.30869 * 21 5 3 23 23 N 1.47028 * 109.87925 * 64.79589 * 3 2 1 24 24 C 1.36945 * 125.64475 * 298.39261 * 23 3 2 25 25 H 1.08000 * 119.99906 * 336.67687 * 24 23 3 26 26 C 1.38807 * 119.99629 * 156.66992 * 24 23 3 27 27 N 1.31618 * 120.00279 * 336.03350 * 26 24 23 28 28 Si 1.86806 * 119.99799 * 156.30607 * 26 24 23 29 29 H 1.48503 * 109.47112 * 269.72705 * 28 26 24 30 30 H 1.48503 * 109.46956 * 29.72598 * 28 26 24 31 31 H 1.48502 * 109.46900 * 149.72522 * 28 26 24 32 32 H 1.08996 * 109.47495 * 291.98831 * 1 2 3 33 33 H 1.08998 * 109.47359 * 51.99575 * 1 2 3 34 34 H 1.09005 * 109.46378 * 171.99326 * 1 2 3 35 35 H 1.09004 * 109.47291 * 240.00899 * 2 1 3 36 36 H 1.08999 * 109.47702 * 120.00404 * 2 1 3 37 37 H 0.96997 * 120.00295 * 20.14214 * 7 5 3 38 38 H 1.07998 * 120.20542 * 359.97438 * 11 10 8 39 39 H 1.07998 * 120.81236 * 180.24084 * 12 11 10 40 40 H 0.96701 * 113.99894 * 89.97458 * 16 15 14 41 41 H 1.08995 * 111.00683 * 277.23894 * 21 5 3 42 42 H 1.08999 * 111.00515 * 153.37718 * 21 5 3 43 43 H 1.08999 * 110.36444 * 204.14933 * 22 21 5 44 44 H 1.08994 * 110.36626 * 81.83114 * 22 21 5 45 45 H 0.97002 * 120.00004 * 353.84669 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6284 1.9834 -0.8521 5 6 3.5818 1.4572 -0.0673 6 1 3.9917 0.5157 0.2983 7 7 4.0416 1.7254 -1.4321 8 6 5.2939 1.3890 -1.7996 9 8 6.0417 0.8627 -0.9988 10 6 5.7577 1.6593 -3.1772 11 6 7.0602 1.3108 -3.5440 12 6 7.4914 1.5546 -4.8212 13 6 6.6053 2.1614 -5.7176 14 7 6.6998 2.5404 -7.0142 15 6 5.5672 3.0729 -7.3992 16 8 5.3193 3.5575 -8.6366 17 7 4.6744 3.0667 -6.3682 18 1 3.7651 3.4032 -6.3936 19 6 5.3048 2.4921 -5.2801 20 7 4.9312 2.2332 -4.0433 21 6 3.9619 2.6260 0.8797 22 6 2.8732 2.5054 1.9751 23 7 1.6515 2.1102 1.2510 24 6 0.3673 2.3242 1.6760 25 1 -0.4409 2.3510 0.9602 26 6 0.1046 2.5063 3.0268 27 7 0.9345 2.0272 3.9291 28 14 -1.4307 3.4248 3.5641 29 1 -1.1234 4.8723 3.6889 30 1 -2.5021 3.2315 2.5540 31 1 -1.8873 2.9006 4.8764 32 1 -0.3634 0.3848 0.9529 33 1 -0.3634 0.6327 -0.8097 34 1 -0.3632 -1.0177 -0.1432 35 1 1.8934 -0.5137 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 3.4448 2.1451 -2.0713 38 1 7.7215 0.8485 -2.8262 39 1 8.4928 1.2898 -5.1271 40 1 4.9598 2.9027 -9.2507 41 1 3.8935 3.5842 0.3647 42 1 4.9569 2.4803 1.3002 43 1 2.7265 3.4647 2.4714 44 1 3.1484 1.7402 2.7009 45 1 1.6807 1.4713 3.6551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087702945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:13 Heat of formation + Delta-G solvation = 41.972735 kcal Electronic energy + Delta-G solvation = -29855.155996 eV Core-core repulsion = 25681.900425 eV Total energy + Delta-G solvation = -4173.255571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -42.86630 -40.24927 -39.00542 -37.96809 -37.15816 -34.51547 -34.09408 -32.61910 -32.07483 -31.62659 -30.03396 -28.53462 -26.93900 -25.07709 -24.27892 -23.65536 -22.29624 -21.89807 -21.16985 -20.28315 -19.87642 -19.61428 -18.53271 -17.92069 -17.72924 -17.35747 -16.56489 -16.06669 -15.47061 -15.38413 -14.76824 -14.50645 -14.37443 -14.01322 -13.73493 -13.65514 -13.44959 -13.14452 -12.89719 -12.71458 -12.59499 -12.42768 -12.08451 -11.77176 -11.66704 -11.52275 -11.09746 -10.91776 -10.76901 -10.50729 -10.35294 -10.15637 -10.11660 -10.05309 -9.84081 -9.63562 -9.43152 -9.40724 -8.96575 -8.71214 -8.42251 -6.92745 -6.04147 -3.19835 -0.04813 0.77756 1.52895 1.89690 2.69262 2.94547 3.14893 3.49689 3.51760 3.57039 3.67706 3.73585 4.08043 4.35597 4.54766 4.61064 4.65557 5.08989 5.16958 5.25742 5.32460 5.34977 5.42868 5.54423 5.61740 5.70135 5.92871 5.96100 5.96865 6.05819 6.06750 6.15402 6.28106 6.37766 6.49244 6.56700 6.64939 6.75504 6.84449 6.96337 7.02779 7.04120 7.09645 7.20893 7.32250 7.63469 7.84003 8.20531 8.48800 9.02513 9.79894 10.36665 11.24560 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.002402 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.921784 B =11656.087660 C =12405.045379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.158 3.842 4 H 0.037 0.963 5 C 0.133 3.867 6 H 0.096 0.904 7 N -0.692 5.692 8 C 0.571 3.429 9 O -0.528 6.528 10 C 0.128 3.872 11 C -0.119 4.119 12 C -0.026 4.026 13 C 0.034 3.966 14 N -0.479 5.479 15 C 0.475 3.525 16 O -0.437 6.437 17 N -0.586 5.586 18 H 0.431 0.569 19 C 0.248 3.752 20 N -0.450 5.450 21 C -0.144 4.144 22 C 0.144 3.856 23 N -0.591 5.591 24 C -0.323 4.323 25 H 0.066 0.934 26 C -0.026 4.026 27 N -0.918 5.918 28 Si 1.068 2.932 29 H -0.294 1.294 30 H -0.292 1.292 31 H -0.290 1.290 32 H 0.093 0.907 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.408 0.592 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.416 0.584 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.031 0.969 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.363 -0.443 -22.957 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.051 3.949 4 H 0.055 0.945 5 C 0.028 3.972 6 H 0.114 0.886 7 N -0.342 5.342 8 C 0.354 3.646 9 O -0.404 6.404 10 C -0.021 4.021 11 C -0.142 4.142 12 C -0.054 4.054 13 C -0.087 4.087 14 N -0.211 5.211 15 C 0.170 3.830 16 O -0.239 6.239 17 N -0.213 5.213 18 H 0.272 0.728 19 C 0.010 3.990 20 N -0.166 5.166 21 C -0.184 4.184 22 C 0.018 3.982 23 N -0.317 5.317 24 C -0.451 4.451 25 H 0.084 0.916 26 C -0.228 4.228 27 N -0.559 5.559 28 Si 0.898 3.102 29 H -0.221 1.221 30 H -0.219 1.219 31 H -0.216 1.216 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.244 0.756 38 H 0.179 0.821 39 H 0.171 0.829 40 H 0.275 0.725 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.029 0.479 -21.175 23.025 hybrid contribution -0.204 -0.630 -2.008 2.115 sum 8.825 -0.151 -23.184 24.807 Atomic orbital electron populations 1.21910 0.95642 0.98863 1.04245 1.21888 0.97101 0.97553 0.99705 1.21161 0.89459 0.92353 0.91963 0.94496 1.22197 0.95557 0.99338 0.80087 0.88646 1.45927 1.13423 1.60542 1.14293 1.17629 0.82580 0.79139 0.85209 1.90817 1.54707 1.43334 1.51559 1.21055 0.91085 0.96884 0.93028 1.21633 0.96036 0.99949 0.96596 1.20476 0.99391 0.94890 0.90612 1.19664 0.94079 1.03169 0.91819 1.70657 1.20798 1.18032 1.11646 1.20223 0.84576 0.94551 0.83626 1.84836 1.84862 1.38461 1.15702 1.43055 1.16170 1.52638 1.09468 0.72789 1.18431 0.91629 1.00408 0.88562 1.66188 1.37043 1.13253 1.00097 1.23213 0.99542 0.97658 0.97981 1.21559 0.85202 0.98749 0.92659 1.44526 1.01943 1.65117 1.20128 1.19693 0.83276 1.49002 0.93172 0.91629 1.25786 1.04290 1.00976 0.91767 1.70729 1.17530 1.32250 1.35388 0.83465 0.74888 0.76348 0.75491 1.22139 1.21898 1.21641 0.88877 0.94318 0.95223 0.94257 0.92504 0.75591 0.82052 0.82941 0.72463 0.91570 0.91340 0.92955 0.95143 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.89 37.16 0.33 -2.57 16 2 C -0.12 -2.35 5.48 -26.73 -0.15 -2.49 16 3 C 0.16 3.12 3.01 -66.94 -0.20 2.92 16 4 H 0.04 0.73 7.69 -51.93 -0.40 0.33 16 5 C 0.13 2.35 2.76 -66.09 -0.18 2.17 16 6 H 0.10 1.79 7.40 -51.93 -0.38 1.41 16 7 N -0.69 -10.44 5.19 -52.97 -0.28 -10.71 16 8 C 0.57 8.54 7.80 -12.33 -0.10 8.44 16 9 O -0.53 -9.17 16.01 5.32 0.09 -9.08 16 10 C 0.13 1.60 6.74 -82.98 -0.56 1.05 16 11 C -0.12 -1.23 9.55 -39.48 -0.38 -1.60 16 12 C -0.03 -0.24 10.16 -39.41 -0.40 -0.64 16 13 C 0.03 0.37 7.24 -84.56 -0.61 -0.24 16 14 N -0.48 -5.04 11.30 -12.11 -0.14 -5.17 16 15 C 0.48 3.78 9.39 -88.77 -0.83 2.94 16 16 O -0.44 -2.08 13.62 -17.26 -0.24 -2.32 16 17 N -0.59 -4.55 6.25 -13.33 -0.08 -4.63 16 18 H 0.43 2.17 8.96 -40.82 -0.37 1.81 16 19 C 0.25 2.69 8.46 -155.51 -1.32 1.37 16 20 N -0.45 -5.43 9.54 -8.77 -0.08 -5.52 16 21 C -0.14 -2.69 6.77 -24.58 -0.17 -2.86 16 22 C 0.14 3.28 5.39 -2.53 -0.01 3.26 16 23 N -0.59 -14.06 2.97 -162.56 -0.48 -14.54 16 24 C -0.32 -8.49 7.31 -15.06 -0.11 -8.60 16 25 H 0.07 1.73 7.06 -52.49 -0.37 1.36 16 26 C -0.03 -0.71 5.19 -17.43 -0.09 -0.80 16 27 N -0.92 -26.98 13.04 55.49 0.72 -26.25 16 28 Si 1.07 24.83 29.98 -169.99 -5.10 19.73 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 31 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 32 H 0.09 2.12 5.46 -51.93 -0.28 1.84 16 33 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.41 5.67 7.62 -40.82 -0.31 5.36 16 38 H 0.16 1.48 7.61 -52.49 -0.40 1.08 16 39 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.42 -0.36 9.06 45.56 0.41 0.05 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.05 1.29 8.13 -51.93 -0.42 0.87 16 44 H 0.03 0.75 6.67 -51.93 -0.35 0.40 16 45 H 0.27 7.98 5.93 -40.82 -0.24 7.74 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -34.00 371.84 -9.62 -43.62 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.87 Total: 6.93 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -4.78 Total: 2.34 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -0.34 Total: -66.82 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.15 Total: -11.40 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.10 Total: 19.73 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.00 -9.62 -43.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087702945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.592 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds