Wall clock time and date at job start Wed Apr 1 2020 03:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46923 * 2 1 4 4 H 1.08994 * 109.99990 * 303.69998 * 3 2 1 5 5 C 1.54335 * 109.99176 * 182.65904 * 3 2 1 6 6 H 1.09003 * 110.66652 * 337.04783 * 5 3 2 7 7 N 1.46492 * 110.84890 * 100.20342 * 5 3 2 8 8 C 1.34781 * 120.00106 * 200.14372 * 7 5 3 9 9 O 1.21555 * 119.99796 * 0.02562 * 8 7 5 10 10 C 1.47847 * 119.99919 * 179.97438 * 8 7 5 11 11 C 1.39727 * 119.43401 * 179.73236 * 10 8 7 12 12 C 1.36997 * 119.58776 * 179.72783 * 11 10 8 13 13 C 1.39890 * 118.37197 * 0.57085 * 12 11 10 14 14 N 1.35420 * 133.68421 * 179.69908 * 13 12 11 15 15 C 1.30936 * 109.56769 * 179.97438 * 14 13 12 16 16 O 1.35187 * 124.99813 * 179.97438 * 15 14 13 17 17 N 1.36384 * 110.00753 * 359.97438 * 15 14 13 18 18 H 0.96999 * 126.32520 * 180.02562 * 17 15 14 19 19 C 1.38255 * 107.35970 * 0.02562 * 17 15 14 20 20 N 1.31769 * 133.71794 * 179.97438 * 19 17 15 21 21 C 1.55160 * 103.01972 * 218.66745 * 5 3 2 22 22 C 1.54919 * 101.57959 * 35.30869 * 21 5 3 23 23 N 1.47028 * 109.87925 * 64.79589 * 3 2 1 24 24 C 1.36945 * 125.64475 * 298.39261 * 23 3 2 25 25 H 1.08000 * 119.99906 * 336.67687 * 24 23 3 26 26 C 1.38807 * 119.99629 * 156.66992 * 24 23 3 27 27 N 1.31618 * 120.00279 * 336.03350 * 26 24 23 28 28 Si 1.86806 * 119.99799 * 156.30607 * 26 24 23 29 29 H 1.48503 * 109.47112 * 269.72705 * 28 26 24 30 30 H 1.48503 * 109.46956 * 29.72598 * 28 26 24 31 31 H 1.48502 * 109.46900 * 149.72522 * 28 26 24 32 32 H 1.08996 * 109.47495 * 291.98831 * 1 2 3 33 33 H 1.08998 * 109.47359 * 51.99575 * 1 2 3 34 34 H 1.09005 * 109.46378 * 171.99326 * 1 2 3 35 35 H 1.09004 * 109.47291 * 240.00899 * 2 1 3 36 36 H 1.08999 * 109.47702 * 120.00404 * 2 1 3 37 37 H 0.96997 * 120.00295 * 20.14214 * 7 5 3 38 38 H 1.07998 * 120.20542 * 359.97438 * 11 10 8 39 39 H 1.07998 * 120.81236 * 180.24084 * 12 11 10 40 40 H 0.96701 * 113.99894 * 89.97458 * 16 15 14 41 41 H 1.08995 * 111.00683 * 277.23894 * 21 5 3 42 42 H 1.08999 * 111.00515 * 153.37718 * 21 5 3 43 43 H 1.08999 * 110.36444 * 204.14933 * 22 21 5 44 44 H 1.08994 * 110.36626 * 81.83114 * 22 21 5 45 45 H 0.97002 * 120.00004 * 353.84669 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6284 1.9834 -0.8521 5 6 3.5818 1.4572 -0.0673 6 1 3.9917 0.5157 0.2983 7 7 4.0416 1.7254 -1.4321 8 6 5.2939 1.3890 -1.7996 9 8 6.0417 0.8627 -0.9988 10 6 5.7577 1.6593 -3.1772 11 6 7.0602 1.3108 -3.5440 12 6 7.4914 1.5546 -4.8212 13 6 6.6053 2.1614 -5.7176 14 7 6.6998 2.5404 -7.0142 15 6 5.5672 3.0729 -7.3992 16 8 5.3193 3.5575 -8.6366 17 7 4.6744 3.0667 -6.3682 18 1 3.7651 3.4032 -6.3936 19 6 5.3048 2.4921 -5.2801 20 7 4.9312 2.2332 -4.0433 21 6 3.9619 2.6260 0.8797 22 6 2.8732 2.5054 1.9751 23 7 1.6515 2.1102 1.2510 24 6 0.3673 2.3242 1.6760 25 1 -0.4409 2.3510 0.9602 26 6 0.1046 2.5063 3.0268 27 7 0.9345 2.0272 3.9291 28 14 -1.4307 3.4248 3.5641 29 1 -1.1234 4.8723 3.6889 30 1 -2.5021 3.2315 2.5540 31 1 -1.8873 2.9006 4.8764 32 1 -0.3634 0.3848 0.9529 33 1 -0.3634 0.6327 -0.8097 34 1 -0.3632 -1.0177 -0.1432 35 1 1.8934 -0.5137 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 3.4448 2.1451 -2.0713 38 1 7.7215 0.8485 -2.8262 39 1 8.4928 1.2898 -5.1271 40 1 4.9598 2.9027 -9.2507 41 1 3.8935 3.5842 0.3647 42 1 4.9569 2.4803 1.3002 43 1 2.7265 3.4647 2.4714 44 1 3.1484 1.7402 2.7009 45 1 1.6807 1.4713 3.6551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087702945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:12 Heat of formation + Delta-G solvation = 14.353788 kcal Electronic energy + Delta-G solvation = -29856.353643 eV Core-core repulsion = 25681.900425 eV Total energy + Delta-G solvation = -4174.453218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.56913 -41.38052 -40.05805 -39.20513 -37.86798 -35.89035 -34.99171 -34.31121 -33.65107 -32.48019 -31.07328 -30.18998 -28.49625 -26.53805 -25.50433 -24.51704 -23.52887 -22.94779 -22.47641 -21.71237 -21.31873 -20.41324 -19.50511 -19.29115 -18.66044 -18.52501 -17.59858 -17.17965 -16.41933 -16.32219 -16.14313 -15.93768 -15.56446 -15.42470 -15.24522 -14.96943 -14.63900 -14.41981 -14.26219 -14.05006 -13.76959 -13.38246 -13.31990 -13.24884 -12.83603 -12.64621 -12.54722 -12.48042 -12.27144 -12.16931 -11.89227 -11.85252 -11.73387 -11.56729 -11.39530 -11.34801 -10.53246 -10.44771 -10.18413 -10.14545 -9.62679 -8.93455 -8.16255 -5.29306 -0.82966 0.02102 0.90228 1.15086 1.60208 1.67542 1.73989 1.83548 1.90374 2.39019 2.67298 2.68779 3.01538 3.25622 3.29026 3.47382 3.71614 3.73867 3.75442 3.77868 3.89615 4.09862 4.27445 4.37599 4.43242 4.48253 4.51878 4.56405 4.66557 4.84263 4.88433 4.91165 4.94075 4.99646 5.06534 5.14030 5.22650 5.29916 5.32895 5.51384 5.63358 5.64497 5.82358 6.20751 6.35875 6.40489 6.47567 6.60942 6.96932 7.03863 7.76377 8.36166 9.11588 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.002402 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.921784 B =11656.087660 C =12405.045379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C 0.157 3.843 4 H 0.048 0.952 5 C 0.149 3.851 6 H 0.086 0.914 7 N -0.687 5.687 8 C 0.575 3.425 9 O -0.556 6.556 10 C 0.106 3.894 11 C -0.114 4.114 12 C -0.021 4.021 13 C 0.029 3.971 14 N -0.510 5.510 15 C 0.498 3.502 16 O -0.434 6.434 17 N -0.575 5.575 18 H 0.443 0.557 19 C 0.231 3.769 20 N -0.457 5.457 21 C -0.129 4.129 22 C 0.149 3.851 23 N -0.608 5.608 24 C -0.310 4.310 25 H 0.067 0.933 26 C -0.083 4.083 27 N -0.954 5.954 28 Si 1.114 2.886 29 H -0.289 1.289 30 H -0.269 1.269 31 H -0.299 1.299 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.416 0.584 38 H 0.170 0.830 39 H 0.180 0.820 40 H 0.442 0.558 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.024 0.976 44 H 0.007 0.993 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.479 -0.073 -26.482 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C 0.050 3.950 4 H 0.066 0.934 5 C 0.044 3.956 6 H 0.104 0.896 7 N -0.337 5.337 8 C 0.361 3.639 9 O -0.433 6.433 10 C -0.041 4.041 11 C -0.138 4.138 12 C -0.048 4.048 13 C -0.093 4.093 14 N -0.243 5.243 15 C 0.192 3.808 16 O -0.240 6.240 17 N -0.204 5.204 18 H 0.287 0.713 19 C -0.008 4.008 20 N -0.173 5.173 21 C -0.168 4.168 22 C 0.023 3.977 23 N -0.334 5.334 24 C -0.439 4.439 25 H 0.085 0.915 26 C -0.279 4.279 27 N -0.598 5.598 28 Si 0.939 3.061 29 H -0.216 1.216 30 H -0.194 1.194 31 H -0.226 1.226 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.253 0.747 38 H 0.188 0.812 39 H 0.198 0.802 40 H 0.307 0.693 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.043 0.957 44 H 0.025 0.975 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.111 0.847 -24.788 26.423 hybrid contribution -0.219 -0.729 -1.184 1.407 sum 8.892 0.118 -25.972 27.452 Atomic orbital electron populations 1.21787 0.95640 1.00243 1.02362 1.21822 0.97015 0.96948 1.00010 1.21276 0.90929 0.92562 0.90226 0.93435 1.21800 0.94013 0.98376 0.81442 0.89588 1.45734 1.13922 1.60926 1.13117 1.17930 0.81870 0.78064 0.86060 1.90800 1.55309 1.44495 1.52732 1.20683 0.92185 0.99270 0.91990 1.21709 0.95206 0.99599 0.97252 1.20750 1.00362 0.93922 0.89782 1.19986 0.94307 1.02779 0.92215 1.70681 1.22141 1.19905 1.11551 1.20317 0.83893 0.92135 0.84420 1.84818 1.84948 1.39443 1.14775 1.43037 1.16714 1.52117 1.08571 0.71316 1.18583 0.92318 1.01208 0.88671 1.66053 1.37233 1.13365 1.00634 1.23063 0.98369 0.98614 0.96795 1.21389 0.86414 0.96445 0.93428 1.44740 1.01579 1.65953 1.21125 1.19883 0.84334 1.46671 0.92996 0.91535 1.27008 1.06390 1.02014 0.92458 1.70841 1.18534 1.34441 1.35974 0.82847 0.72703 0.75302 0.75203 1.21609 1.19433 1.22609 0.92703 0.93250 0.93031 0.91303 0.94694 0.74674 0.81209 0.80222 0.69296 0.90682 0.90425 0.95720 0.97501 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 8.89 71.98 0.64 -4.74 16 2 C -0.12 -4.42 5.48 30.60 0.17 -4.25 16 3 C 0.16 6.09 3.01 45.35 0.14 6.23 16 4 H 0.05 1.79 7.69 -2.39 -0.02 1.77 16 5 C 0.15 5.21 2.76 46.19 0.13 5.34 16 6 H 0.09 3.22 7.40 -2.39 -0.02 3.20 16 7 N -0.69 -19.86 5.19 -439.76 -2.28 -22.14 16 8 C 0.58 16.65 7.80 86.79 0.68 17.33 16 9 O -0.56 -18.97 16.01 -3.89 -0.06 -19.04 16 10 C 0.11 2.52 6.74 41.91 0.28 2.80 16 11 C -0.11 -2.18 9.55 22.34 0.21 -1.97 16 12 C -0.02 -0.34 10.16 22.38 0.23 -0.12 16 13 C 0.03 0.57 7.24 39.70 0.29 0.86 16 14 N -0.51 -9.49 11.30 -306.03 -3.46 -12.95 16 15 C 0.50 6.51 9.39 179.70 1.69 8.19 16 16 O -0.43 -2.67 13.62 -84.66 -1.15 -3.83 16 17 N -0.58 -7.48 6.25 -307.02 -1.92 -9.40 16 18 H 0.44 3.30 8.96 -92.71 -0.83 2.47 16 19 C 0.23 4.57 8.46 134.00 1.13 5.70 16 20 N -0.46 -10.30 9.54 -181.67 -1.73 -12.04 16 21 C -0.13 -4.82 6.77 31.99 0.22 -4.60 16 22 C 0.15 7.05 5.39 86.86 0.47 7.52 16 23 N -0.61 -29.39 2.97 -668.23 -1.98 -31.38 16 24 C -0.31 -16.49 7.31 84.03 0.61 -15.88 16 25 H 0.07 3.49 7.06 -2.91 -0.02 3.47 16 26 C -0.08 -4.65 5.19 84.86 0.44 -4.21 16 27 N -0.95 -58.33 13.04 21.65 0.28 -58.04 16 28 Si 1.11 50.80 29.98 68.60 2.06 52.86 16 29 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 30 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 31 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 32 H 0.05 2.50 5.46 -2.39 -0.01 2.49 16 33 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 34 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.42 10.85 7.62 -92.71 -0.71 10.15 16 38 H 0.17 2.87 7.61 -2.91 -0.02 2.85 16 39 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.44 -2.41 9.06 -74.06 -0.67 -3.08 16 41 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.02 1.27 8.13 -2.39 -0.02 1.25 16 44 H 0.01 0.37 6.67 -2.39 -0.02 0.36 16 45 H 0.26 15.92 5.93 -92.71 -0.55 15.37 16 Total: -1.00 -75.30 371.84 -3.84 -79.14 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -0.90 Total: 18.62 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 7.32 Total: 18.19 kcal Atomic # 7 Polarization: -134.85 SS G_CDS: -11.09 Total: -145.94 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -1.22 Total: -22.86 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.06 Total: 52.86 kcal Total: -75.30 -3.84 -79.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087702945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.495 kcal (2) G-P(sol) polarization free energy of solvation -75.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds