Wall clock time and date at job start Wed Apr 1 2020 03:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47168 * 2 1 4 4 H 1.08996 * 109.99777 * 304.89699 * 3 2 1 5 5 C 1.54328 * 109.99052 * 183.85705 * 3 2 1 6 6 H 1.09002 * 110.51717 * 336.97483 * 5 3 2 7 7 N 1.46499 * 110.85350 * 100.19732 * 5 3 2 8 8 C 1.34774 * 120.00572 * 200.14785 * 7 5 3 9 9 O 1.21592 * 119.99724 * 359.97438 * 8 7 5 10 10 C 1.47543 * 120.00350 * 179.97438 * 8 7 5 11 11 C 1.46397 * 120.25048 * 0.02562 * 10 8 7 12 12 C 1.35589 * 119.10742 * 179.97438 * 11 10 8 13 13 C 1.41176 * 119.48150 * 359.97438 * 12 11 10 14 14 N 1.32065 * 132.79004 * 179.97438 * 13 12 11 15 15 N 1.28589 * 109.71574 * 180.02562 * 14 13 12 16 16 C 1.31094 * 110.35731 * 359.97438 * 15 14 13 17 17 O 1.35681 * 126.33930 * 179.97438 * 16 15 14 18 18 N 1.36529 * 107.32684 * 0.02562 * 16 15 14 19 19 C 1.36031 * 133.10636 * 180.30216 * 18 16 15 20 20 C 1.55152 * 103.02277 * 218.66616 * 5 3 2 21 21 C 1.54910 * 101.57974 * 35.30613 * 20 5 3 22 22 N 1.47024 * 109.88250 * 65.98969 * 3 2 1 23 23 C 1.36937 * 125.64711 * 298.39400 * 22 3 2 24 24 H 1.08001 * 119.99698 * 137.66376 * 23 22 3 25 25 C 1.38811 * 120.00174 * 317.66370 * 23 22 3 26 26 N 1.31612 * 120.00077 * 165.29696 * 25 23 22 27 27 Si 1.86795 * 119.99943 * 345.29056 * 25 23 22 28 28 H 1.48500 * 109.46981 * 90.64905 * 27 25 23 29 29 H 1.48504 * 109.47384 * 330.65296 * 27 25 23 30 30 H 1.48495 * 109.47247 * 210.65317 * 27 25 23 31 31 H 1.08999 * 109.47332 * 172.85736 * 1 2 3 32 32 H 1.08994 * 109.47114 * 292.86209 * 1 2 3 33 33 H 1.09003 * 109.46625 * 52.86045 * 1 2 3 34 34 H 1.09000 * 109.47081 * 240.00133 * 2 1 3 35 35 H 1.09003 * 109.46583 * 119.99643 * 2 1 3 36 36 H 0.97005 * 119.99573 * 20.13903 * 7 5 3 37 37 H 1.08006 * 120.44758 * 359.97243 * 11 10 8 38 38 H 1.07997 * 120.26469 * 180.02562 * 12 11 10 39 39 H 0.96704 * 114.00253 * 270.00621 * 17 16 15 40 40 H 1.08005 * 119.79645 * 359.94316 * 19 18 16 41 41 H 1.09004 * 111.00712 * 277.23419 * 20 5 3 42 42 H 1.08998 * 111.00975 * 153.37963 * 20 5 3 43 43 H 1.09004 * 110.36479 * 204.15215 * 21 20 5 44 44 H 1.08999 * 110.36730 * 81.83661 * 21 20 5 45 45 H 0.97006 * 120.00357 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6119 1.9893 -0.8401 5 6 3.5802 1.4576 -0.0976 6 1 3.9946 0.5131 0.2551 7 7 4.0132 1.7352 -1.4693 8 6 5.2579 1.4013 -1.8638 9 8 6.0217 0.8701 -1.0810 10 6 5.6937 1.6804 -3.2455 11 6 4.7788 2.3203 -4.1924 12 6 5.2036 2.5665 -5.4562 13 6 6.5149 2.2026 -5.8317 14 7 7.1880 2.3143 -6.9625 15 7 8.3700 1.8305 -6.8133 16 6 8.5289 1.3833 -5.5914 17 8 9.6486 0.8083 -5.0849 18 7 7.3587 1.6021 -4.9229 19 6 6.9553 1.3511 -3.6483 20 6 3.9792 2.6198 0.8498 21 6 2.9122 2.4916 1.9656 22 7 1.6763 2.1015 1.2630 23 6 0.4009 2.3125 1.7146 24 1 0.1613 2.1437 2.7541 25 6 -0.5840 2.7434 0.8364 26 7 -1.8517 2.6712 1.1826 27 14 -0.1100 3.4258 -0.8366 28 1 -0.0756 2.3222 -1.8296 29 1 1.2314 4.0573 -0.7518 30 1 -1.1089 4.4403 -1.2584 31 1 -0.3634 -1.0197 -0.1278 32 1 -0.3633 0.3992 0.9469 33 1 -0.3633 0.6205 -0.8193 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 3.4039 2.1593 -2.0937 37 1 3.7788 2.5926 -3.8883 38 1 4.5443 3.0381 -6.1699 39 1 9.6797 -0.1525 -5.1906 40 1 7.6361 0.8837 -2.9521 41 1 3.9008 3.5816 0.3429 42 1 4.9823 2.4713 1.2495 43 1 2.7755 3.4476 2.4712 44 1 3.2016 1.7214 2.6805 45 1 -2.5400 2.9720 0.5688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087759186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:19 Heat of formation + Delta-G solvation = 76.181963 kcal Electronic energy + Delta-G solvation = -30413.074126 eV Core-core repulsion = 26241.301978 eV Total energy + Delta-G solvation = -4171.772147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.03915 -40.37729 -38.64705 -38.24365 -37.67672 -34.72835 -34.06865 -32.70414 -32.09615 -31.69214 -29.50563 -29.45118 -27.22735 -25.44160 -24.27021 -24.18527 -23.02310 -21.92451 -21.42144 -20.77192 -20.09103 -19.66988 -18.65394 -17.73440 -17.55372 -17.12004 -16.82730 -16.23548 -15.54675 -15.45436 -15.19870 -15.02482 -14.73156 -14.34709 -13.98665 -13.48410 -13.27570 -13.13174 -13.06596 -12.89992 -12.69233 -12.45684 -12.20093 -12.09461 -12.00095 -11.65650 -11.44827 -11.31429 -11.07023 -10.96475 -10.73727 -10.57119 -10.40750 -10.17785 -10.10259 -10.06156 -9.82221 -9.58496 -9.04987 -8.66749 -8.47650 -6.85388 -6.13506 -3.60935 -0.07289 0.27648 1.29666 1.80470 2.43213 2.80265 3.05153 3.13371 3.18541 3.29302 3.33203 3.55816 3.91949 3.92757 4.23905 4.31601 4.36688 4.67711 4.90470 4.97303 4.98299 5.14743 5.23249 5.26401 5.28957 5.40917 5.46750 5.62392 5.73878 5.82045 5.90409 5.94681 6.06150 6.09888 6.23705 6.32654 6.54811 6.59222 6.64960 6.68647 6.70869 6.78016 7.03807 7.28485 7.59219 7.86791 7.90689 7.92933 8.22510 8.73140 9.51372 10.12590 11.01049 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019087 B = 0.002795 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.609763 B =10016.894163 C =10751.250912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.118 4.118 3 C 0.144 3.856 4 H 0.036 0.964 5 C 0.134 3.866 6 H 0.101 0.899 7 N -0.704 5.704 8 C 0.571 3.429 9 O -0.533 6.533 10 C -0.149 4.149 11 C -0.064 4.064 12 C -0.078 4.078 13 C 0.215 3.785 14 N -0.269 5.269 15 N -0.237 5.237 16 C 0.322 3.678 17 O -0.426 6.426 18 N -0.406 5.406 19 C 0.140 3.860 20 C -0.145 4.145 21 C 0.129 3.871 22 N -0.598 5.598 23 C -0.248 4.248 24 H 0.082 0.918 25 C 0.049 3.951 26 N -0.897 5.897 27 Si 0.879 3.121 28 H -0.279 1.279 29 H -0.271 1.271 30 H -0.302 1.302 31 H 0.026 0.974 32 H 0.107 0.893 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.399 0.601 37 H 0.156 0.844 38 H 0.170 0.830 39 H 0.408 0.592 40 H 0.187 0.813 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.030 0.970 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.232 -3.659 -10.891 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C 0.037 3.963 4 H 0.054 0.946 5 C 0.029 3.971 6 H 0.119 0.881 7 N -0.354 5.354 8 C 0.356 3.644 9 O -0.412 6.412 10 C -0.156 4.156 11 C -0.089 4.089 12 C -0.099 4.099 13 C -0.035 4.035 14 N -0.116 5.116 15 N -0.086 5.086 16 C 0.023 3.977 17 O -0.225 6.225 18 N -0.098 5.098 19 C 0.016 3.984 20 C -0.185 4.185 21 C 0.004 3.996 22 N -0.325 5.325 23 C -0.376 4.376 24 H 0.100 0.900 25 C -0.153 4.153 26 N -0.538 5.538 27 Si 0.710 3.290 28 H -0.206 1.206 29 H -0.196 1.196 30 H -0.230 1.230 31 H 0.045 0.955 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.235 0.765 37 H 0.174 0.826 38 H 0.187 0.813 39 H 0.266 0.734 40 H 0.204 0.796 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.267 -3.172 -11.664 20.266 hybrid contribution -0.450 -0.254 -0.122 0.531 sum 15.816 -3.426 -11.787 20.020 Atomic orbital electron populations 1.22104 0.94615 0.98909 1.05911 1.21824 0.97846 0.96364 0.99704 1.21422 0.89535 0.93352 0.91944 0.94639 1.22213 0.95773 0.99529 0.79555 0.88101 1.45949 1.13623 1.61243 1.14572 1.17472 0.82442 0.78929 0.85515 1.90822 1.53083 1.43193 1.54058 1.20651 0.93768 1.05116 0.96068 1.22356 0.99666 0.95104 0.91757 1.20225 0.90678 1.01623 0.97333 1.22160 0.93939 1.00440 0.86934 1.74981 0.98335 1.20301 1.18002 1.74554 1.11104 1.12253 1.10727 1.21867 0.82206 1.06017 0.87643 1.85024 1.30555 1.27477 1.79462 1.44028 1.12990 1.41833 1.10974 1.21755 0.96487 0.96532 0.83617 1.23188 0.99416 0.97948 0.97909 1.21787 0.85939 0.98315 0.93539 1.44526 1.01970 1.65751 1.20276 1.18370 0.82157 1.40547 0.96548 0.90041 1.25524 0.95153 0.96496 0.98141 1.69775 0.99141 1.47922 1.36935 0.86998 0.77871 0.78811 0.85367 1.20615 1.19619 1.22955 0.95524 0.87411 0.93958 0.94280 0.92284 0.76490 0.82649 0.81303 0.73433 0.79570 0.91308 0.91103 0.92752 0.95167 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 8.30 37.16 0.31 -2.96 16 2 C -0.12 -2.15 5.46 -26.73 -0.15 -2.30 16 3 C 0.14 2.68 2.16 -66.95 -0.14 2.54 16 4 H 0.04 0.71 3.34 -51.93 -0.17 0.54 16 5 C 0.13 2.07 2.76 -66.10 -0.18 1.89 16 6 H 0.10 1.60 7.40 -51.93 -0.38 1.21 16 7 N -0.70 -8.98 5.17 -53.07 -0.27 -9.25 16 8 C 0.57 6.98 7.77 -12.47 -0.10 6.88 16 9 O -0.53 -7.96 16.03 5.28 0.08 -7.88 16 10 C -0.15 -1.43 5.98 -103.46 -0.62 -2.05 16 11 C -0.06 -0.49 9.73 -37.25 -0.36 -0.86 16 12 C -0.08 -0.61 10.09 -39.41 -0.40 -1.01 16 13 C 0.22 2.30 7.91 -155.70 -1.23 1.07 16 14 N -0.27 -3.45 12.28 31.26 0.38 -3.07 16 15 N -0.24 -3.03 12.19 29.73 0.36 -2.67 16 16 C 0.32 3.37 9.39 -88.51 -0.83 2.54 16 17 O -0.43 -3.18 13.65 -18.74 -0.26 -3.44 16 18 N -0.41 -4.09 2.95 -63.68 -0.19 -4.28 16 19 C 0.14 1.29 10.54 -16.33 -0.17 1.12 16 20 C -0.15 -2.27 6.77 -24.58 -0.17 -2.43 16 21 C 0.13 2.35 7.23 -2.53 -0.02 2.33 16 22 N -0.60 -12.80 2.56 -162.57 -0.42 -13.22 16 23 C -0.25 -6.28 8.23 -15.06 -0.12 -6.40 16 24 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 25 C 0.05 1.27 3.61 -17.43 -0.06 1.21 16 26 N -0.90 -24.99 13.97 55.49 0.78 -24.22 16 27 Si 0.88 20.10 23.28 -169.99 -3.96 16.14 16 28 H -0.28 -6.03 6.09 56.52 0.34 -5.69 16 29 H -0.27 -5.98 7.10 56.52 0.40 -5.58 16 30 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.11 2.59 5.13 -51.93 -0.27 2.32 16 33 H 0.04 0.91 5.51 -51.93 -0.29 0.62 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.40 4.43 6.42 -40.82 -0.26 4.17 16 37 H 0.16 0.88 6.58 -52.48 -0.35 0.54 16 38 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 39 H 0.41 0.79 9.06 45.56 0.41 1.21 16 40 H 0.19 1.50 7.58 -52.48 -0.40 1.10 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -32.29 360.75 -7.00 -39.28 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.70 Total: 5.59 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -4.25 Total: 1.57 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.64 Total: -56.71 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.17 Total: -11.32 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -3.96 Total: 16.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.29 -7.00 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087759186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.466 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds