Wall clock time and date at job start Wed Apr 1 2020 03:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47168 * 2 1 4 4 H 1.08996 * 109.99777 * 304.89699 * 3 2 1 5 5 C 1.54328 * 109.99052 * 183.85705 * 3 2 1 6 6 H 1.09002 * 110.51717 * 336.97483 * 5 3 2 7 7 N 1.46499 * 110.85350 * 100.19732 * 5 3 2 8 8 C 1.34774 * 120.00572 * 200.14785 * 7 5 3 9 9 O 1.21592 * 119.99724 * 359.97438 * 8 7 5 10 10 C 1.47543 * 120.00350 * 179.97438 * 8 7 5 11 11 C 1.46397 * 120.25048 * 0.02562 * 10 8 7 12 12 C 1.35589 * 119.10742 * 179.97438 * 11 10 8 13 13 C 1.41176 * 119.48150 * 359.97438 * 12 11 10 14 14 N 1.32065 * 132.79004 * 179.97438 * 13 12 11 15 15 N 1.28589 * 109.71574 * 180.02562 * 14 13 12 16 16 C 1.31094 * 110.35731 * 359.97438 * 15 14 13 17 17 O 1.35681 * 126.33930 * 179.97438 * 16 15 14 18 18 N 1.36529 * 107.32684 * 0.02562 * 16 15 14 19 19 C 1.36031 * 133.10636 * 180.30216 * 18 16 15 20 20 C 1.55152 * 103.02277 * 218.66616 * 5 3 2 21 21 C 1.54910 * 101.57974 * 35.30613 * 20 5 3 22 22 N 1.47024 * 109.88250 * 65.98969 * 3 2 1 23 23 C 1.36937 * 125.64711 * 298.39400 * 22 3 2 24 24 H 1.08001 * 119.99698 * 137.66376 * 23 22 3 25 25 C 1.38811 * 120.00174 * 317.66370 * 23 22 3 26 26 N 1.31612 * 120.00077 * 165.29696 * 25 23 22 27 27 Si 1.86795 * 119.99943 * 345.29056 * 25 23 22 28 28 H 1.48500 * 109.46981 * 90.64905 * 27 25 23 29 29 H 1.48504 * 109.47384 * 330.65296 * 27 25 23 30 30 H 1.48495 * 109.47247 * 210.65317 * 27 25 23 31 31 H 1.08999 * 109.47332 * 172.85736 * 1 2 3 32 32 H 1.08994 * 109.47114 * 292.86209 * 1 2 3 33 33 H 1.09003 * 109.46625 * 52.86045 * 1 2 3 34 34 H 1.09000 * 109.47081 * 240.00133 * 2 1 3 35 35 H 1.09003 * 109.46583 * 119.99643 * 2 1 3 36 36 H 0.97005 * 119.99573 * 20.13903 * 7 5 3 37 37 H 1.08006 * 120.44758 * 359.97243 * 11 10 8 38 38 H 1.07997 * 120.26469 * 180.02562 * 12 11 10 39 39 H 0.96704 * 114.00253 * 270.00621 * 17 16 15 40 40 H 1.08005 * 119.79645 * 359.94316 * 19 18 16 41 41 H 1.09004 * 111.00712 * 277.23419 * 20 5 3 42 42 H 1.08998 * 111.00975 * 153.37963 * 20 5 3 43 43 H 1.09004 * 110.36479 * 204.15215 * 21 20 5 44 44 H 1.08999 * 110.36730 * 81.83661 * 21 20 5 45 45 H 0.97006 * 120.00357 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6119 1.9893 -0.8401 5 6 3.5802 1.4576 -0.0976 6 1 3.9946 0.5131 0.2551 7 7 4.0132 1.7352 -1.4693 8 6 5.2579 1.4013 -1.8638 9 8 6.0217 0.8701 -1.0810 10 6 5.6937 1.6804 -3.2455 11 6 4.7788 2.3203 -4.1924 12 6 5.2036 2.5665 -5.4562 13 6 6.5149 2.2026 -5.8317 14 7 7.1880 2.3143 -6.9625 15 7 8.3700 1.8305 -6.8133 16 6 8.5289 1.3833 -5.5914 17 8 9.6486 0.8083 -5.0849 18 7 7.3587 1.6021 -4.9229 19 6 6.9553 1.3511 -3.6483 20 6 3.9792 2.6198 0.8498 21 6 2.9122 2.4916 1.9656 22 7 1.6763 2.1015 1.2630 23 6 0.4009 2.3125 1.7146 24 1 0.1613 2.1437 2.7541 25 6 -0.5840 2.7434 0.8364 26 7 -1.8517 2.6712 1.1826 27 14 -0.1100 3.4258 -0.8366 28 1 -0.0756 2.3222 -1.8296 29 1 1.2314 4.0573 -0.7518 30 1 -1.1089 4.4403 -1.2584 31 1 -0.3634 -1.0197 -0.1278 32 1 -0.3633 0.3992 0.9469 33 1 -0.3633 0.6205 -0.8193 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 3.4039 2.1593 -2.0937 37 1 3.7788 2.5926 -3.8883 38 1 4.5443 3.0381 -6.1699 39 1 9.6797 -0.1525 -5.1906 40 1 7.6361 0.8837 -2.9521 41 1 3.9008 3.5816 0.3429 42 1 4.9823 2.4713 1.2495 43 1 2.7755 3.4476 2.4712 44 1 3.2016 1.7214 2.6805 45 1 -2.5400 2.9720 0.5688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087759186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:18 Heat of formation + Delta-G solvation = 50.953220 kcal Electronic energy + Delta-G solvation = -30414.168126 eV Core-core repulsion = 26241.301978 eV Total energy + Delta-G solvation = -4172.866147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.79106 -41.40016 -39.82532 -38.93469 -38.58168 -35.86497 -34.96366 -34.18778 -33.72459 -32.59106 -31.01853 -30.19965 -28.63014 -26.67271 -25.58153 -24.91799 -23.74244 -23.39546 -22.54797 -22.07190 -21.36160 -20.54969 -19.48778 -18.61880 -18.52030 -18.36949 -17.82928 -17.52601 -16.85297 -16.20331 -16.14713 -16.01683 -15.85206 -15.49705 -15.14360 -14.93178 -14.71159 -14.52642 -14.03682 -13.76776 -13.69253 -13.67477 -13.50224 -13.40384 -13.08888 -12.95551 -12.86060 -12.55624 -12.30678 -12.29437 -12.08740 -11.88538 -11.70996 -11.69337 -11.57228 -11.28154 -11.20164 -10.84541 -10.37663 -10.15484 -9.37274 -8.62226 -8.12172 -5.57539 -0.78661 -0.37154 0.57772 1.04082 1.31511 1.44651 1.54188 1.63696 1.86603 2.26869 2.47548 2.49900 2.90162 3.10381 3.21305 3.29662 3.39443 3.53352 3.63442 3.66324 3.82469 4.04669 4.12640 4.35408 4.35522 4.41348 4.51125 4.60287 4.63028 4.69014 4.76072 4.81112 4.91108 5.03708 5.05528 5.07530 5.12331 5.20091 5.27981 5.32494 5.38209 5.52903 5.83221 6.03821 6.22324 6.25011 6.33600 6.89593 6.98022 7.12794 7.58302 8.25997 9.06258 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019087 B = 0.002795 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.609763 B =10016.894163 C =10751.250912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C 0.140 3.860 4 H 0.033 0.967 5 C 0.148 3.852 6 H 0.102 0.898 7 N -0.700 5.700 8 C 0.580 3.420 9 O -0.560 6.560 10 C -0.152 4.152 11 C -0.053 4.053 12 C -0.078 4.078 13 C 0.211 3.789 14 N -0.303 5.303 15 N -0.272 5.272 16 C 0.331 3.669 17 O -0.427 6.427 18 N -0.408 5.408 19 C 0.146 3.854 20 C -0.132 4.132 21 C 0.124 3.876 22 N -0.614 5.614 23 C -0.235 4.235 24 H 0.037 0.963 25 C 0.002 3.998 26 N -0.945 5.945 27 Si 0.931 3.069 28 H -0.255 1.255 29 H -0.253 1.253 30 H -0.317 1.317 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.410 0.590 37 H 0.182 0.818 38 H 0.196 0.804 39 H 0.432 0.568 40 H 0.197 0.803 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.035 0.965 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.122 -3.947 -12.621 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C 0.034 3.966 4 H 0.050 0.950 5 C 0.043 3.957 6 H 0.120 0.880 7 N -0.351 5.351 8 C 0.367 3.633 9 O -0.440 6.440 10 C -0.159 4.159 11 C -0.077 4.077 12 C -0.098 4.098 13 C -0.040 4.040 14 N -0.149 5.149 15 N -0.121 5.121 16 C 0.030 3.970 17 O -0.230 6.230 18 N -0.101 5.101 19 C 0.022 3.978 20 C -0.172 4.172 21 C -0.001 4.001 22 N -0.341 5.341 23 C -0.364 4.364 24 H 0.055 0.945 25 C -0.195 4.195 26 N -0.589 5.589 27 Si 0.759 3.241 28 H -0.181 1.181 29 H -0.177 1.177 30 H -0.246 1.246 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.248 0.752 37 H 0.199 0.801 38 H 0.213 0.787 39 H 0.294 0.706 40 H 0.214 0.786 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.212 -3.487 -13.430 22.895 hybrid contribution -0.979 -0.268 0.572 1.165 sum 17.233 -3.755 -12.858 21.827 Atomic orbital electron populations 1.21956 0.96538 0.99408 1.03090 1.21802 0.95920 0.96571 1.01122 1.21495 0.91923 0.93067 0.90086 0.94972 1.21875 0.93153 0.99572 0.81140 0.87985 1.45768 1.14175 1.61552 1.13601 1.17628 0.81711 0.77906 0.86081 1.90820 1.53740 1.44344 1.55098 1.20440 0.94310 1.06089 0.95063 1.22584 1.00238 0.93894 0.91006 1.20560 0.89764 1.01524 0.97995 1.22631 0.94830 0.99937 0.86558 1.74887 0.98808 1.21812 1.19397 1.74462 1.11662 1.13735 1.12198 1.21912 0.82645 1.05230 0.87201 1.84988 1.29347 1.29621 1.79052 1.44074 1.12878 1.41955 1.11168 1.21900 0.96676 0.95956 0.83298 1.23090 0.99113 0.98211 0.96756 1.21882 0.85598 0.98090 0.94535 1.44582 1.01460 1.66580 1.21456 1.18059 0.84081 1.39446 0.94836 0.94505 1.26016 0.94684 0.97064 1.01765 1.69919 1.00351 1.50099 1.38498 0.86152 0.77781 0.78388 0.81748 1.18120 1.17691 1.24616 0.93768 0.91478 0.95045 0.91137 0.92459 0.75204 0.80095 0.78746 0.70599 0.78621 0.90978 0.89321 0.93476 0.94653 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.14 8.30 71.98 0.60 -5.54 16 2 C -0.12 -3.90 5.46 30.60 0.17 -3.74 16 3 C 0.14 4.85 2.16 45.34 0.10 4.94 16 4 H 0.03 1.17 3.34 -2.39 -0.01 1.16 16 5 C 0.15 4.05 2.76 46.18 0.13 4.18 16 6 H 0.10 2.85 7.40 -2.39 -0.02 2.84 16 7 N -0.70 -14.77 5.17 -440.06 -2.27 -17.04 16 8 C 0.58 11.88 7.77 86.70 0.67 12.56 16 9 O -0.56 -14.80 16.03 -4.01 -0.06 -14.87 16 10 C -0.15 -2.34 5.98 -19.11 -0.11 -2.45 16 11 C -0.05 -0.58 9.73 23.78 0.23 -0.35 16 12 C -0.08 -0.95 10.09 22.38 0.23 -0.73 16 13 C 0.21 4.06 7.91 134.08 1.06 5.12 16 14 N -0.30 -7.47 12.28 -55.01 -0.68 -8.15 16 15 N -0.27 -6.76 12.19 -173.30 -2.11 -8.87 16 16 C 0.33 6.41 9.39 179.61 1.69 8.09 16 17 O -0.43 -5.53 13.65 -89.99 -1.23 -6.75 16 18 N -0.41 -7.31 2.95 -465.99 -1.38 -8.69 16 19 C 0.15 2.24 10.54 83.63 0.88 3.12 16 20 C -0.13 -3.70 6.77 31.98 0.22 -3.48 16 21 C 0.12 4.32 7.23 86.86 0.63 4.95 16 22 N -0.61 -25.72 2.56 -668.25 -1.71 -27.44 16 23 C -0.24 -12.17 8.23 84.03 0.69 -11.48 16 24 H 0.04 2.19 8.06 -2.91 -0.02 2.17 16 25 C 0.00 0.12 3.61 84.86 0.31 0.43 16 26 N -0.95 -54.58 13.97 21.65 0.30 -54.28 16 27 Si 0.93 40.51 23.28 68.60 1.60 42.11 16 28 H -0.26 -10.06 6.09 99.48 0.61 -9.45 16 29 H -0.25 -10.13 7.10 99.48 0.71 -9.42 16 30 H -0.32 -14.57 7.11 99.48 0.71 -13.86 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 3.27 5.13 -2.39 -0.01 3.26 16 33 H 0.03 1.29 5.51 -2.39 -0.01 1.28 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.41 7.00 6.42 -92.70 -0.60 6.40 16 37 H 0.18 1.06 6.58 -2.91 -0.02 1.04 16 38 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.43 0.68 9.06 -74.05 -0.67 0.01 16 40 H 0.20 2.57 7.58 -2.91 -0.02 2.55 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -72.53 360.75 -0.36 -72.90 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -0.29 Total: 15.46 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 7.48 Total: 15.62 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -7.85 Total: -124.47 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.29 Total: -21.62 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.60 Total: 42.11 kcal Total: -72.53 -0.36 -72.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087759186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.850 kcal (2) G-P(sol) polarization free energy of solvation -72.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds