Wall clock time and date at job start Wed Apr 1 2020 03:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47278 * 2 1 4 4 H 1.08994 * 109.99948 * 304.62343 * 3 2 1 5 5 C 1.54332 * 109.99005 * 183.58421 * 3 2 1 6 6 H 1.08992 * 110.52009 * 336.97697 * 5 3 2 7 7 N 1.46498 * 110.85011 * 100.20314 * 5 3 2 8 8 C 1.34771 * 120.00055 * 200.14685 * 7 5 3 9 9 O 1.21640 * 120.00246 * 359.97438 * 8 7 5 10 10 C 1.47203 * 120.00310 * 179.97438 * 8 7 5 11 11 C 1.38845 * 120.90153 * 359.71660 * 10 8 7 12 12 C 1.39936 * 119.43520 * 179.77774 * 11 10 8 13 13 C 1.35021 * 121.26505 * 0.50856 * 12 11 10 14 14 N 1.36254 * 121.58008 * 359.74840 * 13 12 11 15 15 C 1.36375 * 133.87403 * 179.97438 * 14 13 12 16 16 O 1.35707 * 126.33660 * 359.97438 * 15 14 13 17 17 N 1.31101 * 107.32864 * 179.97438 * 15 14 13 18 18 N 1.28698 * 110.31398 * 0.02562 * 17 15 14 19 19 C 1.31475 * 109.67059 * 359.97438 * 18 17 15 20 20 C 1.55157 * 103.01870 * 218.66740 * 5 3 2 21 21 C 1.54903 * 101.58240 * 35.30681 * 20 5 3 22 22 N 1.47024 * 109.87775 * 65.71943 * 3 2 1 23 23 C 1.36931 * 125.64748 * 298.39313 * 22 3 2 24 24 H 1.08000 * 120.00156 * 333.71028 * 23 22 3 25 25 C 1.38810 * 120.00109 * 153.71456 * 23 22 3 26 26 N 1.31625 * 119.99544 * 334.83488 * 25 23 22 27 27 Si 1.86797 * 120.00288 * 154.83946 * 25 23 22 28 28 H 1.48501 * 109.47160 * 59.99892 * 27 25 23 29 29 H 1.48495 * 109.47190 * 299.99575 * 27 25 23 30 30 H 1.48506 * 109.47246 * 179.97438 * 27 25 23 31 31 H 1.08994 * 109.46986 * 291.79469 * 1 2 3 32 32 H 1.09004 * 109.47097 * 51.78906 * 1 2 3 33 33 H 1.08996 * 109.47405 * 171.79113 * 1 2 3 34 34 H 1.09008 * 109.46944 * 240.00143 * 2 1 3 35 35 H 1.08995 * 109.47385 * 120.00222 * 2 1 3 36 36 H 0.96996 * 120.00093 * 20.13881 * 7 5 3 37 37 H 1.08009 * 120.28135 * 0.02562 * 11 10 8 38 38 H 1.07999 * 119.36987 * 180.23478 * 12 11 10 39 39 H 1.08003 * 119.20571 * 179.76067 * 13 12 11 40 40 H 0.96699 * 114.00458 * 269.97869 * 16 15 14 41 41 H 1.09007 * 111.00612 * 277.23401 * 20 5 3 42 42 H 1.09004 * 111.00567 * 153.38295 * 20 5 3 43 43 H 1.09002 * 110.37204 * 204.15080 * 21 20 5 44 44 H 1.09011 * 110.36743 * 81.83069 * 21 20 5 45 45 H 0.96996 * 120.00054 * 353.73502 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5806 1.4574 -0.0907 6 1 3.9934 0.5136 0.2652 7 7 4.0196 1.7330 -1.4609 8 6 5.2661 1.3985 -1.8492 9 8 6.0267 0.8682 -1.0619 10 6 5.7071 1.6748 -3.2262 11 6 4.8526 2.2739 -4.1419 12 6 5.3053 2.5268 -5.4417 13 6 6.5550 2.1901 -5.8263 14 7 7.4301 1.5956 -4.9677 15 6 8.7169 1.1586 -5.0817 16 8 9.4933 1.2256 -6.1927 17 7 9.0651 0.6620 -3.9195 18 7 8.0907 0.7546 -3.0839 19 6 7.0581 1.3201 -3.6692 20 6 3.9753 2.6211 0.8567 21 6 2.9034 2.4947 1.9678 22 7 1.6706 2.1034 1.2603 23 6 0.3933 2.3150 1.7059 24 1 -0.4193 2.3936 0.9988 25 6 0.1427 2.4287 3.0665 26 7 0.9578 1.8683 3.9348 27 14 -1.3514 3.3768 3.6650 28 1 -2.5844 2.7504 3.1243 29 1 -1.2648 4.7836 3.1976 30 1 -1.3929 3.3496 5.1493 31 1 -0.3633 0.3815 0.9542 32 1 -0.3633 0.6357 -0.8075 33 1 -0.3634 -1.0171 -0.1467 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 3.4132 2.1560 -2.0886 37 1 3.8483 2.5462 -3.8524 38 1 4.6410 2.9964 -6.1520 39 1 6.8685 2.3972 -6.8389 40 1 9.4265 0.4502 -6.7667 41 1 3.8991 3.5821 0.3479 42 1 4.9766 2.4732 1.2611 43 1 2.7643 3.4514 2.4714 44 1 3.1895 1.7255 2.6853 45 1 1.6808 1.3007 3.6249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087794414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:23 Heat of formation + Delta-G solvation = 73.272062 kcal Electronic energy + Delta-G solvation = -30161.220494 eV Core-core repulsion = 25989.322164 eV Total energy + Delta-G solvation = -4171.898330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.89410 -40.01506 -38.56891 -38.12506 -37.78271 -34.48956 -33.96718 -32.59634 -31.99602 -31.47683 -29.50833 -28.53233 -26.98297 -25.46446 -24.38678 -23.82129 -23.21443 -21.91418 -21.28550 -20.36345 -19.97177 -19.29223 -18.50875 -17.77128 -17.49765 -17.33734 -16.87033 -16.00959 -15.87689 -15.29725 -14.83111 -14.69052 -14.31330 -13.99068 -13.63290 -13.39636 -13.19157 -13.11429 -13.02646 -12.91796 -12.71654 -12.42793 -12.17976 -12.09764 -11.66766 -11.42270 -11.10475 -10.92156 -10.78981 -10.76170 -10.50412 -10.28138 -10.14600 -10.06596 -10.04038 -9.90162 -9.84476 -9.43830 -8.86057 -8.54856 -8.41259 -6.92448 -6.06448 -3.23875 -0.28221 0.52598 1.37237 2.10431 2.37626 2.96820 3.17145 3.28097 3.47155 3.51079 3.54034 3.68910 3.79141 4.08762 4.21675 4.42853 4.56668 4.86402 4.95116 5.07887 5.24065 5.27672 5.31199 5.33366 5.36359 5.40523 5.59163 5.69037 5.90727 5.94629 6.01605 6.03496 6.13625 6.26844 6.35120 6.49383 6.54973 6.63301 6.73803 6.75233 6.94142 7.03639 7.09075 7.31526 7.50119 7.84904 8.12213 8.20494 8.47862 9.00265 9.77651 10.36148 11.21330 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024801 B = 0.002351 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.717596 B =11909.101161 C =12241.885717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.036 0.964 5 C 0.137 3.863 6 H 0.096 0.904 7 N -0.708 5.708 8 C 0.557 3.443 9 O -0.500 6.500 10 C -0.077 4.077 11 C -0.045 4.045 12 C -0.142 4.142 13 C 0.088 3.912 14 N -0.408 5.408 15 C 0.313 3.687 16 O -0.427 6.427 17 N -0.238 5.238 18 N -0.236 5.236 19 C 0.233 3.767 20 C -0.144 4.144 21 C 0.143 3.857 22 N -0.589 5.589 23 C -0.327 4.327 24 H 0.063 0.937 25 C -0.023 4.023 26 N -0.912 5.912 27 Si 1.064 2.936 28 H -0.293 1.293 29 H -0.294 1.294 30 H -0.286 1.286 31 H 0.092 0.908 32 H 0.037 0.963 33 H 0.029 0.971 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.396 0.604 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.173 0.827 40 H 0.405 0.595 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.031 0.969 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.668 1.193 -24.972 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.050 3.950 4 H 0.054 0.946 5 C 0.033 3.967 6 H 0.114 0.886 7 N -0.360 5.360 8 C 0.341 3.659 9 O -0.375 6.375 10 C -0.084 4.084 11 C -0.070 4.070 12 C -0.164 4.164 13 C -0.034 4.034 14 N -0.101 5.101 15 C 0.014 3.986 16 O -0.226 6.226 17 N -0.088 5.088 18 N -0.081 5.081 19 C -0.019 4.019 20 C -0.184 4.184 21 C 0.017 3.983 22 N -0.315 5.315 23 C -0.455 4.455 24 H 0.081 0.919 25 C -0.227 4.227 26 N -0.551 5.551 27 Si 0.894 3.106 28 H -0.220 1.220 29 H -0.221 1.221 30 H -0.211 1.211 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.231 0.769 37 H 0.175 0.825 38 H 0.182 0.818 39 H 0.190 0.810 40 H 0.262 0.738 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.662 1.187 -21.806 23.493 hybrid contribution -0.330 -0.196 -3.301 3.323 sum 8.332 0.991 -25.107 26.472 Atomic orbital electron populations 1.21889 0.95631 0.98850 1.04215 1.21893 0.97064 0.97557 0.99774 1.21186 0.89438 0.92363 0.92009 0.94619 1.22156 0.95648 0.99413 0.79515 0.88594 1.45889 1.13368 1.62285 1.14456 1.17426 0.82618 0.80049 0.85789 1.90925 1.52668 1.40737 1.53122 1.20280 0.88795 1.03367 0.96007 1.21892 0.99746 0.93230 0.92117 1.20820 0.95008 1.02983 0.97567 1.21757 0.89770 0.95989 0.95907 1.44099 1.11831 1.41636 1.12544 1.21815 0.80392 1.04892 0.91536 1.85020 1.59998 1.46304 1.31285 1.74759 1.21193 1.15779 0.97081 1.75069 0.94953 1.17009 1.21091 1.22598 0.96591 1.01666 0.81092 1.23202 0.99607 0.97616 0.97965 1.21559 0.85218 0.98694 0.92798 1.44509 1.01927 1.65308 1.19783 1.19575 0.83751 1.49503 0.92645 0.91926 1.25836 1.03979 1.00488 0.92364 1.70759 1.18973 1.28973 1.36419 0.83537 0.74812 0.76094 0.76181 1.21979 1.22105 1.21139 0.88932 0.94339 0.95225 0.94282 0.92471 0.76900 0.82529 0.81774 0.80982 0.73815 0.91590 0.91322 0.93078 0.95146 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.98 37.16 0.33 -2.46 16 2 C -0.12 -2.28 5.47 -26.73 -0.15 -2.43 16 3 C 0.16 2.96 3.00 -66.95 -0.20 2.76 16 4 H 0.04 0.64 7.69 -51.93 -0.40 0.24 16 5 C 0.14 2.34 2.76 -66.09 -0.18 2.16 16 6 H 0.10 1.81 7.40 -51.93 -0.38 1.43 16 7 N -0.71 -9.46 5.16 -53.17 -0.27 -9.73 16 8 C 0.56 8.28 7.77 -12.62 -0.10 8.18 16 9 O -0.50 -9.73 16.01 5.24 0.08 -9.65 16 10 C -0.08 -0.90 6.06 -102.69 -0.62 -1.52 16 11 C -0.05 -0.30 9.63 -38.72 -0.37 -0.67 16 12 C -0.14 -0.59 9.91 -40.09 -0.40 -0.99 16 13 C 0.09 0.47 10.94 -16.73 -0.18 0.29 16 14 N -0.41 -4.06 2.97 -62.51 -0.19 -4.24 16 15 C 0.31 3.43 9.41 -88.64 -0.83 2.60 16 16 O -0.43 -3.00 13.65 -18.83 -0.26 -3.26 16 17 N -0.24 -3.58 12.20 29.70 0.36 -3.22 16 18 N -0.24 -3.97 11.76 32.37 0.38 -3.59 16 19 C 0.23 3.17 7.75 -153.91 -1.19 1.97 16 20 C -0.14 -2.64 6.77 -24.59 -0.17 -2.81 16 21 C 0.14 3.21 5.56 -2.53 -0.01 3.19 16 22 N -0.59 -13.64 2.92 -162.57 -0.47 -14.12 16 23 C -0.33 -8.39 7.22 -15.06 -0.11 -8.50 16 24 H 0.06 1.61 7.24 -52.49 -0.38 1.22 16 25 C -0.02 -0.64 5.17 -17.43 -0.09 -0.73 16 26 N -0.91 -26.56 13.05 55.49 0.72 -25.84 16 27 Si 1.06 24.36 29.99 -169.99 -5.10 19.26 16 28 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 30 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 31 H 0.09 2.08 5.52 -51.93 -0.29 1.79 16 32 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.40 3.95 6.42 -40.82 -0.26 3.69 16 37 H 0.16 0.61 6.48 -52.48 -0.34 0.27 16 38 H 0.16 0.06 8.06 -52.49 -0.42 -0.36 16 39 H 0.17 0.27 8.06 -52.48 -0.42 -0.15 16 40 H 0.40 0.55 9.06 45.56 0.41 0.96 16 41 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.03 0.75 6.73 -51.92 -0.35 0.40 16 45 H 0.27 7.95 6.20 -40.82 -0.25 7.70 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -37.12 371.25 -8.26 -45.38 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.84 Total: 2.39 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -4.28 Total: 1.03 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.53 Total: -60.75 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.17 Total: -12.90 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.10 Total: 19.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.12 -8.26 -45.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087794414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.653 kcal (2) G-P(sol) polarization free energy of solvation -37.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds