Wall clock time and date at job start Wed Apr 1 2020 03:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47278 * 2 1 4 4 H 1.08994 * 109.99948 * 304.62343 * 3 2 1 5 5 C 1.54332 * 109.99005 * 183.58421 * 3 2 1 6 6 H 1.08992 * 110.52009 * 336.97697 * 5 3 2 7 7 N 1.46498 * 110.85011 * 100.20314 * 5 3 2 8 8 C 1.34771 * 120.00055 * 200.14685 * 7 5 3 9 9 O 1.21640 * 120.00246 * 359.97438 * 8 7 5 10 10 C 1.47203 * 120.00310 * 179.97438 * 8 7 5 11 11 C 1.38845 * 120.90153 * 359.71660 * 10 8 7 12 12 C 1.39936 * 119.43520 * 179.77774 * 11 10 8 13 13 C 1.35021 * 121.26505 * 0.50856 * 12 11 10 14 14 N 1.36254 * 121.58008 * 359.74840 * 13 12 11 15 15 C 1.36375 * 133.87403 * 179.97438 * 14 13 12 16 16 O 1.35707 * 126.33660 * 359.97438 * 15 14 13 17 17 N 1.31101 * 107.32864 * 179.97438 * 15 14 13 18 18 N 1.28698 * 110.31398 * 0.02562 * 17 15 14 19 19 C 1.31475 * 109.67059 * 359.97438 * 18 17 15 20 20 C 1.55157 * 103.01870 * 218.66740 * 5 3 2 21 21 C 1.54903 * 101.58240 * 35.30681 * 20 5 3 22 22 N 1.47024 * 109.87775 * 65.71943 * 3 2 1 23 23 C 1.36931 * 125.64748 * 298.39313 * 22 3 2 24 24 H 1.08000 * 120.00156 * 333.71028 * 23 22 3 25 25 C 1.38810 * 120.00109 * 153.71456 * 23 22 3 26 26 N 1.31625 * 119.99544 * 334.83488 * 25 23 22 27 27 Si 1.86797 * 120.00288 * 154.83946 * 25 23 22 28 28 H 1.48501 * 109.47160 * 59.99892 * 27 25 23 29 29 H 1.48495 * 109.47190 * 299.99575 * 27 25 23 30 30 H 1.48506 * 109.47246 * 179.97438 * 27 25 23 31 31 H 1.08994 * 109.46986 * 291.79469 * 1 2 3 32 32 H 1.09004 * 109.47097 * 51.78906 * 1 2 3 33 33 H 1.08996 * 109.47405 * 171.79113 * 1 2 3 34 34 H 1.09008 * 109.46944 * 240.00143 * 2 1 3 35 35 H 1.08995 * 109.47385 * 120.00222 * 2 1 3 36 36 H 0.96996 * 120.00093 * 20.13881 * 7 5 3 37 37 H 1.08009 * 120.28135 * 0.02562 * 11 10 8 38 38 H 1.07999 * 119.36987 * 180.23478 * 12 11 10 39 39 H 1.08003 * 119.20571 * 179.76067 * 13 12 11 40 40 H 0.96699 * 114.00458 * 269.97869 * 16 15 14 41 41 H 1.09007 * 111.00612 * 277.23401 * 20 5 3 42 42 H 1.09004 * 111.00567 * 153.38295 * 20 5 3 43 43 H 1.09002 * 110.37204 * 204.15080 * 21 20 5 44 44 H 1.09011 * 110.36743 * 81.83069 * 21 20 5 45 45 H 0.96996 * 120.00054 * 353.73502 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5806 1.4574 -0.0907 6 1 3.9934 0.5136 0.2652 7 7 4.0196 1.7330 -1.4609 8 6 5.2661 1.3985 -1.8492 9 8 6.0267 0.8682 -1.0619 10 6 5.7071 1.6748 -3.2262 11 6 4.8526 2.2739 -4.1419 12 6 5.3053 2.5268 -5.4417 13 6 6.5550 2.1901 -5.8263 14 7 7.4301 1.5956 -4.9677 15 6 8.7169 1.1586 -5.0817 16 8 9.4933 1.2256 -6.1927 17 7 9.0651 0.6620 -3.9195 18 7 8.0907 0.7546 -3.0839 19 6 7.0581 1.3201 -3.6692 20 6 3.9753 2.6211 0.8567 21 6 2.9034 2.4947 1.9678 22 7 1.6706 2.1034 1.2603 23 6 0.3933 2.3150 1.7059 24 1 -0.4193 2.3936 0.9988 25 6 0.1427 2.4287 3.0665 26 7 0.9578 1.8683 3.9348 27 14 -1.3514 3.3768 3.6650 28 1 -2.5844 2.7504 3.1243 29 1 -1.2648 4.7836 3.1976 30 1 -1.3929 3.3496 5.1493 31 1 -0.3633 0.3815 0.9542 32 1 -0.3633 0.6357 -0.8075 33 1 -0.3634 -1.0171 -0.1467 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 3.4132 2.1560 -2.0886 37 1 3.8483 2.5462 -3.8524 38 1 4.6410 2.9964 -6.1520 39 1 6.8685 2.3972 -6.8389 40 1 9.4265 0.4502 -6.7667 41 1 3.8991 3.5821 0.3479 42 1 4.9766 2.4732 1.2611 43 1 2.7643 3.4514 2.4714 44 1 3.1895 1.7255 2.6853 45 1 1.6808 1.3007 3.6249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087794414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:22 Heat of formation + Delta-G solvation = 43.086444 kcal Electronic energy + Delta-G solvation = -30162.529441 eV Core-core repulsion = 25989.322164 eV Total energy + Delta-G solvation = -4173.207276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.66884 -41.20891 -39.63305 -38.94320 -38.75136 -35.84120 -34.93221 -34.21589 -33.54544 -32.21896 -30.67772 -29.95853 -28.46812 -26.57350 -25.82224 -24.57479 -24.12948 -23.46606 -22.43480 -21.76773 -21.35543 -20.27853 -19.35333 -19.17657 -18.49005 -18.34514 -17.79294 -17.20808 -16.46602 -16.26367 -16.00305 -15.92648 -15.66437 -15.54217 -15.22058 -14.88052 -14.58426 -14.08986 -13.99217 -13.77127 -13.72617 -13.70205 -13.36480 -13.22007 -12.91958 -12.80498 -12.64365 -12.48349 -12.20003 -12.09819 -11.90243 -11.80901 -11.70614 -11.58836 -11.53711 -11.34867 -11.08938 -10.76091 -10.40715 -10.15134 -9.27548 -8.89354 -8.14297 -5.29369 -0.89542 -0.10580 0.67659 1.38093 1.54458 1.62337 1.69905 1.87166 1.91985 2.38735 2.52391 2.71131 2.96436 3.13329 3.29951 3.43735 3.56964 3.69835 3.76740 3.78079 3.79127 4.12704 4.29252 4.29799 4.38873 4.42152 4.49679 4.59874 4.66810 4.69233 4.74354 4.84345 4.90542 4.96059 5.02512 5.08753 5.12667 5.17188 5.24913 5.34835 5.55713 5.57076 5.69343 5.88066 6.28885 6.41928 6.47536 6.98603 7.16732 7.28962 7.78192 8.40063 9.11968 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024801 B = 0.002351 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.717596 B =11909.101161 C =12241.885717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C 0.158 3.842 4 H 0.065 0.935 5 C 0.153 3.847 6 H 0.072 0.928 7 N -0.691 5.691 8 C 0.560 3.440 9 O -0.562 6.562 10 C -0.137 4.137 11 C 0.008 3.992 12 C -0.136 4.136 13 C 0.096 3.904 14 N -0.407 5.407 15 C 0.329 3.671 16 O -0.421 6.421 17 N -0.291 5.291 18 N -0.310 5.310 19 C 0.225 3.775 20 C -0.129 4.129 21 C 0.148 3.852 22 N -0.605 5.605 23 C -0.309 4.309 24 H 0.070 0.930 25 C -0.084 4.084 26 N -0.952 5.952 27 Si 1.111 2.889 28 H -0.272 1.272 29 H -0.279 1.279 30 H -0.302 1.302 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.024 0.976 36 H 0.417 0.583 37 H 0.193 0.807 38 H 0.221 0.779 39 H 0.220 0.780 40 H 0.431 0.569 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.026 0.974 44 H -0.002 1.002 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.652 3.158 -30.859 31.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C 0.052 3.948 4 H 0.083 0.917 5 C 0.047 3.953 6 H 0.090 0.910 7 N -0.345 5.345 8 C 0.348 3.652 9 O -0.440 6.440 10 C -0.144 4.144 11 C -0.016 4.016 12 C -0.157 4.157 13 C -0.025 4.025 14 N -0.100 5.100 15 C 0.027 3.973 16 O -0.224 6.224 17 N -0.139 5.139 18 N -0.155 5.155 19 C -0.029 4.029 20 C -0.169 4.169 21 C 0.022 3.978 22 N -0.331 5.331 23 C -0.438 4.438 24 H 0.088 0.912 25 C -0.280 4.280 26 N -0.595 5.595 27 Si 0.936 3.064 28 H -0.198 1.198 29 H -0.206 1.206 30 H -0.229 1.229 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.256 0.744 37 H 0.210 0.790 38 H 0.238 0.762 39 H 0.236 0.764 40 H 0.293 0.707 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.016 0.984 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.630 3.147 -27.794 28.747 hybrid contribution 0.292 -0.773 -1.800 1.980 sum 6.922 2.375 -29.594 30.485 Atomic orbital electron populations 1.21765 0.95388 1.00251 1.02507 1.21845 0.97149 0.97243 0.99745 1.21330 0.90452 0.92471 0.90575 0.91745 1.21665 0.94398 0.97733 0.81456 0.91022 1.45513 1.13575 1.62337 1.13028 1.17916 0.81942 0.78442 0.86909 1.90898 1.54295 1.43596 1.55244 1.19886 0.89554 1.09632 0.95357 1.22508 0.99767 0.87495 0.91867 1.21505 0.95102 1.01983 0.97082 1.22870 0.89449 0.93197 0.96948 1.44216 1.11903 1.41875 1.11996 1.21736 0.80822 1.03079 0.91613 1.84998 1.59189 1.47935 1.30253 1.74549 1.22178 1.18347 0.98843 1.74907 0.96783 1.20548 1.23252 1.22825 0.96721 1.00995 0.82351 1.23038 0.97761 0.99168 0.96888 1.21360 0.86629 0.96250 0.93551 1.44731 1.01407 1.66149 1.20847 1.19811 0.84803 1.46678 0.92518 0.91249 1.27089 1.05983 1.01591 0.93356 1.70879 1.20245 1.31371 1.36996 0.82900 0.72901 0.75779 0.74772 1.19794 1.20562 1.22886 0.93046 0.92356 0.93361 0.91047 0.95745 0.74421 0.79040 0.76232 0.76365 0.70749 0.89684 0.91789 0.95593 0.98407 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.98 71.98 0.65 -4.43 16 2 C -0.12 -4.34 5.47 30.59 0.17 -4.17 16 3 C 0.16 5.73 3.00 45.35 0.14 5.86 16 4 H 0.06 2.04 7.69 -2.39 -0.02 2.02 16 5 C 0.15 5.21 2.76 46.18 0.13 5.34 16 6 H 0.07 2.83 7.40 -2.39 -0.02 2.82 16 7 N -0.69 -17.10 5.16 -440.38 -2.27 -19.38 16 8 C 0.56 16.54 7.77 86.60 0.67 17.21 16 9 O -0.56 -23.24 16.01 -4.16 -0.07 -23.30 16 10 C -0.14 -2.95 6.06 -18.61 -0.11 -3.06 16 11 C 0.01 0.06 9.63 22.83 0.22 0.28 16 12 C -0.14 -0.16 9.91 21.94 0.22 0.06 16 13 C 0.10 0.48 10.94 83.27 0.91 1.39 16 14 N -0.41 -7.10 2.97 -462.36 -1.37 -8.47 16 15 C 0.33 6.88 9.41 179.66 1.69 8.57 16 16 O -0.42 -4.87 13.65 -90.28 -1.23 -6.10 16 17 N -0.29 -9.20 12.20 -173.36 -2.12 -11.32 16 18 N -0.31 -11.18 11.76 -51.51 -0.61 -11.79 16 19 C 0.22 6.08 7.75 135.68 1.05 7.14 16 20 C -0.13 -4.81 6.77 31.98 0.22 -4.59 16 21 C 0.15 6.99 5.56 86.85 0.48 7.47 16 22 N -0.61 -28.35 2.92 -668.25 -1.95 -30.30 16 23 C -0.31 -15.95 7.22 84.03 0.61 -15.34 16 24 H 0.07 3.46 7.24 -2.91 -0.02 3.44 16 25 C -0.08 -4.66 5.17 84.86 0.44 -4.22 16 26 N -0.95 -58.34 13.05 21.65 0.28 -58.05 16 27 Si 1.11 49.73 29.99 68.60 2.06 51.79 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 29 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 30 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 31 H 0.05 2.28 5.52 -2.39 -0.01 2.26 16 32 H 0.06 1.83 8.13 -2.39 -0.02 1.81 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.42 6.47 6.42 -92.71 -0.59 5.87 16 37 H 0.19 0.08 6.48 -2.91 -0.02 0.07 16 38 H 0.22 -2.01 8.06 -2.91 -0.02 -2.04 16 39 H 0.22 -0.98 8.06 -2.91 -0.02 -1.00 16 40 H 0.43 -0.11 9.06 -74.06 -0.67 -0.79 16 41 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 42 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 43 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.00 -0.10 6.73 -2.38 -0.02 -0.12 16 45 H 0.25 15.94 6.20 -92.71 -0.57 15.37 16 Total: -1.00 -93.68 371.25 0.19 -93.50 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -0.01 Total: 5.91 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 7.47 Total: 17.52 kcal Atomic # 7 Polarization: -131.27 SS G_CDS: -8.04 Total: -139.31 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.30 Total: -29.40 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.06 Total: 51.79 kcal Total: -93.68 0.19 -93.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087794414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.583 kcal (2) G-P(sol) polarization free energy of solvation -93.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds