Wall clock time and date at job start Wed Apr 1 2020 04:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46781 * 2 1 4 4 N 1.46501 * 109.47596 * 299.99556 * 3 2 1 5 5 C 1.36932 * 120.00291 * 180.02562 * 4 3 2 6 6 H 1.08006 * 119.99984 * 0.02562 * 5 4 3 7 7 C 1.38809 * 120.00185 * 180.02562 * 5 4 3 8 8 N 1.31620 * 119.99579 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00333 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47122 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47100 * 120.00084 * 9 7 5 12 12 H 1.48493 * 109.47489 * 240.00380 * 9 7 5 13 13 N 1.46501 * 109.46961 * 240.00013 * 2 1 3 14 14 C 1.34780 * 119.99673 * 175.39230 * 13 2 1 15 15 O 1.21577 * 120.00201 * 355.82542 * 14 13 2 16 16 C 1.47674 * 119.99969 * 175.81675 * 14 13 2 17 17 C 1.39915 * 120.38850 * 0.02562 * 16 14 13 18 18 N 1.31454 * 121.13879 * 179.97438 * 17 16 14 19 19 C 1.32476 * 121.80527 * 0.02562 * 18 17 16 20 20 N 1.37875 * 133.44073 * 179.97438 * 19 18 17 21 21 H 0.96999 * 126.25166 * 0.05270 * 20 19 18 22 22 C 1.36515 * 107.49631 * 180.02562 * 20 19 18 23 23 O 1.35260 * 125.02603 * 180.02562 * 22 20 19 24 24 N 1.30729 * 109.95166 * 359.97438 * 22 20 19 25 25 C 1.35893 * 109.40085 * 0.02562 * 24 22 20 26 26 C 1.39402 * 133.63524 * 179.97438 * 25 24 22 27 27 C 1.53004 * 109.46906 * 119.99820 * 2 1 3 28 28 C 1.53000 * 117.49522 * 121.75632 * 27 2 1 29 29 C 1.52993 * 60.00324 * 252.51538 * 28 27 2 30 30 H 1.09006 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47068 * 299.99929 * 1 2 3 32 32 H 1.08998 * 109.46886 * 60.00396 * 1 2 3 33 33 H 1.09004 * 109.47086 * 60.00189 * 3 2 1 34 34 H 1.09004 * 109.46800 * 179.97438 * 3 2 1 35 35 H 0.97000 * 119.99422 * 0.02562 * 4 3 2 36 36 H 0.97004 * 119.99463 * 179.97438 * 8 7 5 37 37 H 0.96998 * 120.00118 * 355.39768 * 13 2 1 38 38 H 1.07999 * 119.43321 * 359.97438 * 17 16 14 39 39 H 0.96699 * 113.99932 * 89.99813 * 23 22 20 40 40 H 1.08007 * 120.96697 * 0.02562 * 26 25 24 41 41 H 1.08993 * 115.55004 * 267.46523 * 27 2 1 42 42 H 1.09001 * 117.49902 * 0.02562 * 28 27 2 43 43 H 1.09000 * 117.49580 * 145.01517 * 28 27 2 44 44 H 1.09004 * 117.49699 * 252.51696 * 29 28 27 45 45 H 1.08994 * 117.50477 * 107.49342 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8829 3.4440 -1.4131 6 1 2.5045 3.9687 -0.7025 7 6 1.4199 4.0985 -2.5462 8 7 0.6620 3.4592 -3.4119 9 14 1.8711 5.8869 -2.8418 10 1 2.7258 6.3723 -1.7286 11 1 2.6131 6.0050 -4.1228 12 1 0.6337 6.7050 -2.9094 13 7 2.0184 -0.6906 -1.1962 14 6 3.3399 -0.7332 -1.4574 15 8 4.1204 -0.1348 -0.7427 16 6 3.8399 -1.5068 -2.6117 17 6 2.9489 -2.1982 -3.4397 18 7 3.3777 -2.8909 -4.4713 19 6 4.6651 -2.9677 -4.7743 20 7 5.3674 -3.6079 -5.7733 21 1 4.9899 -4.1550 -6.4797 22 6 6.6910 -3.3304 -5.5870 23 8 7.6967 -3.7824 -6.3705 24 7 6.8427 -2.5624 -4.5400 25 6 5.6271 -2.3014 -3.9916 26 6 5.2086 -1.5569 -2.8899 27 6 2.0400 -0.7212 1.2493 28 6 2.9489 -1.9346 1.0429 29 6 1.5079 -2.1303 1.5181 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 0.9938 1.6618 -1.8345 36 1 0.3381 3.9167 -4.2036 37 1 1.3906 -1.1172 -1.8002 38 1 1.8905 -2.1621 -3.2277 39 1 7.9113 -3.1985 -7.1108 40 1 5.9213 -1.0339 -2.2694 41 1 2.2377 -0.0848 2.1118 42 1 3.1839 -2.2187 0.0172 43 1 3.7450 -2.0964 1.7696 44 1 1.3558 -2.4210 2.5576 45 1 0.7945 -2.5435 0.8051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269623526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:26 Heat of formation + Delta-G solvation = 44.462574 kcal Electronic energy + Delta-G solvation = -30588.233691 eV Core-core repulsion = 26415.086088 eV Total energy + Delta-G solvation = -4173.147603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.58583 -41.72203 -39.92326 -38.46428 -37.80054 -36.53969 -34.95574 -34.90151 -33.37764 -32.42402 -31.34920 -30.15922 -27.60003 -25.78790 -25.27143 -24.83605 -23.12096 -23.02826 -22.88469 -22.08745 -20.55065 -20.19724 -19.39528 -19.26747 -19.10599 -17.78519 -17.43914 -17.15128 -16.87422 -16.66279 -16.16247 -15.76174 -15.51796 -15.28954 -15.09159 -15.01829 -14.66207 -14.53262 -14.22469 -13.61264 -13.47370 -13.42444 -13.32703 -13.21972 -12.95950 -12.81233 -12.46416 -12.32999 -12.23242 -12.14993 -12.06133 -11.93086 -11.73692 -11.27521 -11.11073 -10.90790 -10.66469 -10.32823 -10.16576 -9.89043 -9.68893 -8.85667 -7.91509 -5.15570 -0.52518 -0.37871 0.93478 1.37133 1.45516 1.46554 1.56134 1.86217 2.05479 2.48431 2.57693 2.72010 3.01395 3.08573 3.42226 3.45434 3.63410 3.70230 3.72825 3.76601 4.02153 4.06736 4.14651 4.24531 4.43107 4.43514 4.49098 4.63929 4.78618 4.80773 4.86839 4.96520 4.99410 5.04490 5.14561 5.18616 5.28171 5.36270 5.40553 5.44666 5.52526 5.66088 5.75436 6.32294 6.34564 6.40430 6.61988 6.66719 7.35152 7.39953 8.16039 8.44385 9.31680 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008837 B = 0.003697 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.718742 B = 7572.197287 C = 9733.610266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.210 3.790 3 C 0.138 3.862 4 N -0.728 5.728 5 C -0.236 4.236 6 H 0.061 0.939 7 C -0.069 4.069 8 N -0.962 5.962 9 Si 0.963 3.037 10 H -0.274 1.274 11 H -0.296 1.296 12 H -0.289 1.289 13 N -0.700 5.700 14 C 0.575 3.425 15 O -0.553 6.553 16 C -0.193 4.193 17 C 0.182 3.818 18 N -0.482 5.482 19 C 0.261 3.739 20 N -0.570 5.570 21 H 0.446 0.554 22 C 0.487 3.513 23 O -0.431 6.431 24 N -0.508 5.508 25 C -0.010 4.010 26 C 0.032 3.968 27 C -0.161 4.161 28 C -0.174 4.174 29 C -0.148 4.148 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.017 0.983 34 H 0.031 0.969 35 H 0.378 0.622 36 H 0.249 0.751 37 H 0.408 0.592 38 H 0.201 0.799 39 H 0.440 0.560 40 H 0.145 0.855 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 -20.817 -2.268 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.124 3.876 3 C 0.011 3.989 4 N -0.371 5.371 5 C -0.369 4.369 6 H 0.079 0.921 7 C -0.262 4.262 8 N -0.613 5.613 9 Si 0.793 3.207 10 H -0.199 1.199 11 H -0.224 1.224 12 H -0.216 1.216 13 N -0.352 5.352 14 C 0.363 3.637 15 O -0.431 6.431 16 C -0.202 4.202 17 C 0.013 3.987 18 N -0.195 5.195 19 C 0.023 3.977 20 N -0.199 5.199 21 H 0.290 0.710 22 C 0.181 3.819 23 O -0.237 6.237 24 N -0.241 5.241 25 C -0.129 4.129 26 C 0.004 3.996 27 C -0.181 4.181 28 C -0.212 4.212 29 C -0.185 4.185 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.049 0.951 35 H 0.212 0.788 36 H 0.058 0.942 37 H 0.246 0.754 38 H 0.217 0.783 39 H 0.305 0.695 40 H 0.163 0.837 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.333 -20.870 -1.636 21.603 hybrid contribution -0.103 1.364 -1.382 1.944 sum 5.230 -19.506 -3.018 20.420 Atomic orbital electron populations 1.21944 0.91322 1.03508 1.03060 1.19899 0.94777 0.89685 0.83206 1.21233 0.97772 0.90921 0.88999 1.42299 1.60942 1.09654 1.24244 1.19551 1.24068 0.89200 1.04040 0.92054 1.25337 1.01470 1.01764 0.97583 1.69774 1.40944 1.37125 1.13503 0.85222 0.77164 0.81125 0.77195 1.19903 1.22370 1.21602 1.45775 1.06375 1.56426 1.26658 1.17729 0.82967 0.79695 0.83355 1.90749 1.56857 1.44890 1.50635 1.20719 0.94370 1.04754 1.00310 1.23151 1.00704 0.88404 0.86394 1.66481 1.12812 1.21292 1.18884 1.18882 0.90529 0.96263 0.91984 1.42909 1.06059 1.44520 1.26421 0.71024 1.20194 0.79012 0.91471 0.91246 1.84832 1.45285 1.49420 1.44144 1.70705 1.24459 1.18129 1.10774 1.19380 0.90107 1.03961 0.99472 1.20835 0.95149 0.91533 0.92075 1.22430 1.06037 0.91260 0.98373 1.22916 0.94320 1.02090 1.01828 1.23072 0.95895 0.96451 1.03048 0.89017 0.90765 0.93028 0.96549 0.95096 0.78842 0.94163 0.75439 0.78271 0.69539 0.83750 0.87994 0.89813 0.89667 0.87429 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.18 71.98 0.59 -3.11 16 2 C 0.21 6.45 0.55 3.61 0.00 6.45 16 3 C 0.14 5.89 4.83 86.38 0.42 6.31 16 4 N -0.73 -37.05 5.18 -343.45 -1.78 -38.83 16 5 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 6 H 0.06 3.57 7.83 -2.91 -0.02 3.54 16 7 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 8 N -0.96 -58.15 13.06 21.65 0.28 -57.87 16 9 Si 0.96 47.60 29.55 68.60 2.03 49.63 16 10 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 13 N -0.70 -20.03 4.15 -425.90 -1.77 -21.80 16 14 C 0.58 19.18 4.78 86.74 0.41 19.60 16 15 O -0.55 -22.65 12.68 -3.96 -0.05 -22.70 16 16 C -0.19 -5.67 5.89 -20.01 -0.12 -5.79 16 17 C 0.18 4.37 10.69 85.16 0.91 5.28 16 18 N -0.48 -11.90 10.36 -191.60 -1.99 -13.89 16 19 C 0.26 6.46 8.45 133.83 1.13 7.59 16 20 N -0.57 -9.67 6.23 -306.99 -1.91 -11.58 16 21 H 0.45 4.26 8.96 -92.71 -0.83 3.43 16 22 C 0.49 9.09 9.39 179.72 1.69 10.78 16 23 O -0.43 -4.61 13.63 -85.44 -1.16 -5.78 16 24 N -0.51 -13.73 11.32 -306.41 -3.47 -17.20 16 25 C -0.01 -0.28 7.22 39.42 0.28 0.00 16 26 C 0.03 0.99 9.75 22.92 0.22 1.21 16 27 C -0.16 -4.30 4.86 -10.79 -0.05 -4.35 16 28 C -0.17 -4.40 8.53 30.59 0.26 -4.14 16 29 C -0.15 -2.85 9.68 30.59 0.30 -2.55 16 30 H 0.09 1.70 6.89 -2.38 -0.02 1.69 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.62 6.86 -2.39 -0.02 1.60 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.03 1.52 5.72 -2.38 -0.01 1.50 16 35 H 0.38 19.50 6.35 -92.71 -0.59 18.91 16 36 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.41 9.12 6.53 -92.71 -0.61 8.51 16 38 H 0.20 3.38 6.40 -2.91 -0.02 3.36 16 39 H 0.44 -0.26 9.06 -74.06 -0.67 -0.93 16 40 H 0.14 4.71 7.72 -2.91 -0.02 4.69 16 41 H 0.10 2.85 8.06 -2.39 -0.02 2.83 16 42 H 0.08 2.25 5.17 -2.39 -0.01 2.24 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.11 1.75 7.17 -2.39 -0.02 1.73 16 Total: -1.00 -81.36 369.36 -4.05 -85.41 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -1.58 Total: 33.73 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 7.35 Total: 20.87 kcal Atomic # 7 Polarization: -150.54 SS G_CDS: -10.63 Total: -161.16 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -1.21 Total: -28.47 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -81.36 -4.05 -85.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269623526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.868 kcal (2) G-P(sol) polarization free energy of solvation -81.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds