Wall clock time and date at job start Wed Apr 1 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47228 * 2 1 4 4 C 1.52997 * 109.47087 * 120.00669 * 2 1 3 5 5 H 1.09001 * 109.47209 * 299.99399 * 4 2 1 6 6 C 1.53000 * 109.47087 * 179.97438 * 4 2 1 7 7 N 1.46496 * 109.47154 * 185.00061 * 6 4 2 8 8 C 1.34781 * 119.99739 * 180.02562 * 7 6 4 9 9 O 1.21579 * 120.00361 * 359.97438 * 8 7 6 10 10 C 1.47591 * 119.99706 * 179.97438 * 8 7 6 11 11 C 1.38648 * 120.41813 * 354.11413 * 10 8 7 12 12 C 1.39256 * 120.72186 * 179.71838 * 11 10 8 13 13 F 1.35102 * 119.43553 * 180.28423 * 12 11 10 14 14 C 1.36550 * 121.12495 * 0.56791 * 12 11 10 15 15 C 1.40278 * 119.92407 * 359.71477 * 14 12 11 16 16 C 1.40713 * 122.08005 * 179.97438 * 15 14 12 17 17 C 1.36245 * 118.67035 * 180.02562 * 16 15 14 18 18 N 1.32519 * 121.83265 * 0.03003 * 17 16 15 19 19 C 1.31327 * 122.72737 * 359.94791 * 18 17 16 20 20 C 1.40105 * 119.92744 * 0.04765 * 19 18 17 21 21 N 1.46498 * 109.47341 * 59.99526 * 4 2 1 22 22 C 1.36933 * 120.00331 * 274.72206 * 21 4 2 23 23 H 1.08005 * 119.99804 * 0.28227 * 22 21 4 24 24 C 1.38810 * 120.00260 * 180.27565 * 22 21 4 25 25 N 1.31616 * 119.99975 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 120.00101 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.46879 * 59.99769 * 26 24 22 28 28 H 1.48494 * 109.47067 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46927 * 300.00054 * 26 24 22 30 30 H 1.09010 * 109.46766 * 299.99811 * 1 2 3 31 31 H 1.09001 * 109.47728 * 59.99646 * 1 2 3 32 32 H 1.09007 * 109.47328 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46605 * 240.00438 * 2 1 3 34 34 H 1.09000 * 109.47474 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47664 * 300.00532 * 3 2 1 36 36 H 1.09010 * 109.47092 * 60.00389 * 3 2 1 37 37 H 1.09007 * 109.47126 * 304.99585 * 6 4 2 38 38 H 1.09001 * 109.47390 * 64.99615 * 6 4 2 39 39 H 0.97002 * 120.00489 * 359.97438 * 7 6 4 40 40 H 1.08002 * 119.63539 * 359.97438 * 11 10 8 41 41 H 1.08005 * 120.03677 * 179.74381 * 14 12 11 42 42 H 1.08004 * 120.66175 * 0.05432 * 16 15 14 43 43 H 1.07999 * 119.07854 * 179.97438 * 17 16 15 44 44 H 1.08001 * 120.03527 * 180.02562 * 19 18 17 45 45 H 0.97005 * 119.99503 * 95.00363 * 21 4 2 46 46 H 0.96998 * 119.99941 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6767 -0.2076 2.1392 6 6 3.5700 -0.7219 1.2488 7 7 4.0583 -1.5143 2.3801 8 6 5.3834 -1.6556 2.5818 9 8 6.1735 -1.1259 1.8247 10 6 5.8753 -2.4534 3.7219 11 6 4.9880 -2.9596 4.6593 12 6 5.4446 -3.7180 5.7342 13 9 4.5565 -4.2034 6.6292 14 6 6.7752 -3.9747 5.9023 15 6 7.7062 -3.4758 4.9792 16 6 9.0872 -3.7122 5.1086 17 6 9.9297 -3.1939 4.1717 18 7 9.4833 -2.4777 3.1500 19 6 8.2088 -2.2188 2.9675 20 6 7.2595 -2.7065 3.8752 21 7 1.5516 -2.1026 1.2491 22 6 0.3124 -2.3907 1.7555 23 1 -0.3068 -1.5990 2.1508 24 6 -0.1480 -3.7002 1.7606 25 7 0.6067 -4.6650 1.2793 26 14 -1.8389 -4.0931 2.4508 27 1 -2.8715 -3.3526 1.6822 28 1 -2.0917 -5.5522 2.3405 29 1 -1.8977 -3.6864 3.8779 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 3.9330 -1.1565 0.3173 38 1 3.9338 0.3017 1.3382 39 1 3.4279 -1.9367 2.9845 40 1 3.9306 -2.7670 4.5523 41 1 7.1104 -4.5616 6.7448 42 1 9.4716 -4.2933 5.9339 43 1 10.9910 -3.3710 4.2648 44 1 7.8928 -1.6304 2.1188 45 1 2.1078 -2.8136 0.8940 46 1 0.2848 -5.5800 1.2825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319914472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:32 Heat of formation + Delta-G solvation = -17.593399 kcal Electronic energy + Delta-G solvation = -29987.460517 eV Core-core repulsion = 25791.702004 eV Total energy + Delta-G solvation = -4195.758514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.15982 -41.20222 -39.44667 -37.42595 -37.06920 -34.19687 -33.20635 -33.16413 -31.00048 -30.63917 -29.98348 -28.04602 -26.19583 -25.03936 -24.08905 -23.66711 -23.13853 -21.76940 -20.69643 -19.45905 -18.53071 -18.09923 -17.47929 -17.24215 -16.35460 -16.24290 -15.92775 -15.51904 -15.40131 -15.13015 -14.84221 -14.75870 -14.14815 -14.00772 -13.71604 -13.53726 -13.41555 -13.23930 -13.18421 -12.84785 -12.54898 -12.32465 -12.08664 -11.88671 -11.86888 -11.67557 -11.14537 -11.00944 -10.87389 -10.70170 -10.41478 -10.35595 -10.17524 -10.04838 -9.82949 -9.61317 -9.50871 -9.17793 -8.99824 -8.88151 -8.33559 -7.11132 -5.88440 -3.18507 -0.18591 0.55798 1.41754 2.41085 3.11462 3.21262 3.35684 3.41346 3.42700 3.83183 3.88237 4.20436 4.34803 4.48055 4.50983 4.56336 4.64368 4.78493 4.96056 5.18734 5.26827 5.29882 5.35088 5.45495 5.49531 5.57062 5.63517 5.67571 5.68882 5.80662 5.84098 5.91809 5.94020 6.10899 6.17675 6.31140 6.35025 6.39636 6.45183 6.52127 6.55847 6.62804 6.79427 7.00370 7.24647 7.60075 7.63435 7.87365 8.24888 8.28715 9.40719 9.94118 10.29947 11.32933 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010571 B = 0.003401 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.069395 B = 8231.402936 C =10246.390585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.150 4.150 4 C 0.169 3.831 5 H 0.055 0.945 6 C 0.111 3.889 7 N -0.697 5.697 8 C 0.557 3.443 9 O -0.539 6.539 10 C -0.061 4.061 11 C -0.111 4.111 12 C 0.124 3.876 13 F -0.129 7.129 14 C -0.134 4.134 15 C -0.005 4.005 16 C -0.167 4.167 17 C 0.085 3.915 18 N -0.493 5.493 19 C 0.155 3.845 20 C -0.093 4.093 21 N -0.722 5.722 22 C -0.241 4.241 23 H 0.073 0.927 24 C -0.008 4.008 25 N -0.928 5.928 26 Si 0.902 3.098 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.411 0.589 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.154 0.846 44 H 0.203 0.797 45 H 0.385 0.615 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.893 4.880 7.578 15.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 C -0.208 4.208 4 C 0.058 3.942 5 H 0.073 0.927 6 C -0.013 4.013 7 N -0.347 5.347 8 C 0.343 3.657 9 O -0.419 6.419 10 C -0.066 4.066 11 C -0.131 4.131 12 C 0.104 3.896 13 F -0.107 7.107 14 C -0.154 4.154 15 C -0.011 4.011 16 C -0.186 4.186 17 C -0.058 4.058 18 N -0.201 5.201 19 C -0.014 4.014 20 C -0.096 4.096 21 N -0.364 5.364 22 C -0.372 4.372 23 H 0.091 0.909 24 C -0.204 4.204 25 N -0.575 5.575 26 Si 0.733 3.267 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.212 1.212 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.249 0.751 40 H 0.170 0.830 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.171 0.829 44 H 0.219 0.781 45 H 0.219 0.781 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.916 5.470 6.628 16.355 hybrid contribution -2.031 -1.340 1.416 2.815 sum 11.885 4.130 8.044 14.934 Atomic orbital electron populations 1.21820 0.94879 1.03934 0.99043 1.21720 0.96972 0.94412 0.99946 1.21948 1.00497 0.97304 1.01010 1.20566 0.89055 0.88315 0.96236 0.92744 1.21881 0.95998 0.94929 0.88514 1.45955 1.06080 1.51860 1.30849 1.17891 0.83048 0.80575 0.84162 1.90545 1.54531 1.49405 1.47432 1.19810 0.92457 0.98800 0.95536 1.21555 1.01614 0.96792 0.93144 1.17241 0.86873 0.96699 0.88813 1.91574 1.67747 1.85715 1.65705 1.21025 0.91104 1.02325 1.00905 1.17811 0.94053 0.95753 0.93476 1.21815 0.92018 1.03019 1.01785 1.22351 1.00473 0.93126 0.89888 1.67714 1.17603 1.13691 1.21100 1.24661 0.86578 0.92723 0.97453 1.18887 0.93597 1.00142 0.96938 1.42468 1.18336 1.01805 1.73760 1.19137 0.93037 0.92308 1.32745 0.90930 1.24724 0.98254 0.95868 1.01587 1.69641 1.36947 0.99921 1.51014 0.86360 0.84395 0.77126 0.78840 1.21224 1.21765 1.21248 0.94059 0.94946 0.89484 0.91808 0.92994 0.93509 0.93172 0.91261 0.90972 0.75053 0.83021 0.83499 0.84230 0.82912 0.78062 0.78074 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.27 37.16 0.31 -2.08 16 2 C -0.11 -1.73 2.69 -90.63 -0.24 -1.98 16 3 C -0.15 -1.96 8.84 37.15 0.33 -1.63 16 4 C 0.17 2.87 2.18 -67.93 -0.15 2.72 16 5 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 6 C 0.11 1.70 4.73 -4.04 -0.02 1.68 16 7 N -0.70 -10.55 5.34 -61.33 -0.33 -10.87 16 8 C 0.56 8.51 7.73 -12.44 -0.10 8.41 16 9 O -0.54 -9.07 13.47 5.30 0.07 -9.00 16 10 C -0.06 -0.84 5.90 -104.67 -0.62 -1.46 16 11 C -0.11 -1.43 9.48 -39.05 -0.37 -1.80 16 12 C 0.12 1.51 7.22 -39.81 -0.29 1.22 16 13 F -0.13 -1.65 17.24 2.25 0.04 -1.61 16 14 C -0.13 -1.43 9.75 -39.42 -0.38 -1.81 16 15 C -0.01 -0.06 5.74 -106.84 -0.61 -0.68 16 16 C -0.17 -1.62 9.88 -39.36 -0.39 -2.01 16 17 C 0.09 0.91 11.07 -17.97 -0.20 0.71 16 18 N -0.49 -6.70 10.30 -13.22 -0.14 -6.84 16 19 C 0.16 2.21 10.49 -17.07 -0.18 2.03 16 20 C -0.09 -1.27 5.76 -106.58 -0.61 -1.88 16 21 N -0.72 -15.41 4.43 -53.43 -0.24 -15.65 16 22 C -0.24 -5.82 7.58 -15.06 -0.11 -5.93 16 23 H 0.07 1.72 7.41 -52.48 -0.39 1.33 16 24 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 25 N -0.93 -25.81 13.06 55.49 0.72 -25.08 16 26 Si 0.90 20.91 29.55 -169.99 -5.02 15.88 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 30 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.79 6.02 -51.93 -0.31 1.47 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.63 6.55 -51.93 -0.34 0.29 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.02 6.71 -51.93 -0.35 0.67 16 39 H 0.41 6.29 6.21 -40.82 -0.25 6.04 16 40 H 0.15 1.88 6.42 -52.49 -0.34 1.54 16 41 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.20 3.05 4.97 -52.49 -0.26 2.79 16 45 H 0.39 9.08 7.80 -40.82 -0.32 8.76 16 46 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -28.17 379.02 -8.83 -37.00 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -5.92 Total: 15.24 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -3.74 Total: -4.79 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.02 Total: -58.44 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -9.00 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.17 -8.83 -37.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319914472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.404 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds