Wall clock time and date at job start Wed Apr 1 2020 03:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47228 * 2 1 4 4 C 1.52997 * 109.47087 * 120.00669 * 2 1 3 5 5 H 1.09001 * 109.47209 * 299.99399 * 4 2 1 6 6 C 1.53000 * 109.47087 * 179.97438 * 4 2 1 7 7 N 1.46496 * 109.47154 * 185.00061 * 6 4 2 8 8 C 1.34781 * 119.99739 * 180.02562 * 7 6 4 9 9 O 1.21579 * 120.00361 * 359.97438 * 8 7 6 10 10 C 1.47591 * 119.99706 * 179.97438 * 8 7 6 11 11 C 1.38648 * 120.41813 * 354.11413 * 10 8 7 12 12 C 1.39256 * 120.72186 * 179.71838 * 11 10 8 13 13 F 1.35102 * 119.43553 * 180.28423 * 12 11 10 14 14 C 1.36550 * 121.12495 * 0.56791 * 12 11 10 15 15 C 1.40278 * 119.92407 * 359.71477 * 14 12 11 16 16 C 1.40713 * 122.08005 * 179.97438 * 15 14 12 17 17 C 1.36245 * 118.67035 * 180.02562 * 16 15 14 18 18 N 1.32519 * 121.83265 * 0.03003 * 17 16 15 19 19 C 1.31327 * 122.72737 * 359.94791 * 18 17 16 20 20 C 1.40105 * 119.92744 * 0.04765 * 19 18 17 21 21 N 1.46498 * 109.47341 * 59.99526 * 4 2 1 22 22 C 1.36933 * 120.00331 * 274.72206 * 21 4 2 23 23 H 1.08005 * 119.99804 * 0.28227 * 22 21 4 24 24 C 1.38810 * 120.00260 * 180.27565 * 22 21 4 25 25 N 1.31616 * 119.99975 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 120.00101 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.46879 * 59.99769 * 26 24 22 28 28 H 1.48494 * 109.47067 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46927 * 300.00054 * 26 24 22 30 30 H 1.09010 * 109.46766 * 299.99811 * 1 2 3 31 31 H 1.09001 * 109.47728 * 59.99646 * 1 2 3 32 32 H 1.09007 * 109.47328 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46605 * 240.00438 * 2 1 3 34 34 H 1.09000 * 109.47474 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47664 * 300.00532 * 3 2 1 36 36 H 1.09010 * 109.47092 * 60.00389 * 3 2 1 37 37 H 1.09007 * 109.47126 * 304.99585 * 6 4 2 38 38 H 1.09001 * 109.47390 * 64.99615 * 6 4 2 39 39 H 0.97002 * 120.00489 * 359.97438 * 7 6 4 40 40 H 1.08002 * 119.63539 * 359.97438 * 11 10 8 41 41 H 1.08005 * 120.03677 * 179.74381 * 14 12 11 42 42 H 1.08004 * 120.66175 * 0.05432 * 16 15 14 43 43 H 1.07999 * 119.07854 * 179.97438 * 17 16 15 44 44 H 1.08001 * 120.03527 * 180.02562 * 19 18 17 45 45 H 0.97005 * 119.99503 * 95.00363 * 21 4 2 46 46 H 0.96998 * 119.99941 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6767 -0.2076 2.1392 6 6 3.5700 -0.7219 1.2488 7 7 4.0583 -1.5143 2.3801 8 6 5.3834 -1.6556 2.5818 9 8 6.1735 -1.1259 1.8247 10 6 5.8753 -2.4534 3.7219 11 6 4.9880 -2.9596 4.6593 12 6 5.4446 -3.7180 5.7342 13 9 4.5565 -4.2034 6.6292 14 6 6.7752 -3.9747 5.9023 15 6 7.7062 -3.4758 4.9792 16 6 9.0872 -3.7122 5.1086 17 6 9.9297 -3.1939 4.1717 18 7 9.4833 -2.4777 3.1500 19 6 8.2088 -2.2188 2.9675 20 6 7.2595 -2.7065 3.8752 21 7 1.5516 -2.1026 1.2491 22 6 0.3124 -2.3907 1.7555 23 1 -0.3068 -1.5990 2.1508 24 6 -0.1480 -3.7002 1.7606 25 7 0.6067 -4.6650 1.2793 26 14 -1.8389 -4.0931 2.4508 27 1 -2.8715 -3.3526 1.6822 28 1 -2.0917 -5.5522 2.3405 29 1 -1.8977 -3.6864 3.8779 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 3.9330 -1.1565 0.3173 38 1 3.9338 0.3017 1.3382 39 1 3.4279 -1.9367 2.9845 40 1 3.9306 -2.7670 4.5523 41 1 7.1104 -4.5616 6.7448 42 1 9.4716 -4.2933 5.9339 43 1 10.9910 -3.3710 4.2648 44 1 7.8928 -1.6304 2.1188 45 1 2.1078 -2.8136 0.8940 46 1 0.2848 -5.5800 1.2825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319914472.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:31 Heat of formation + Delta-G solvation = -33.889046 kcal Electronic energy + Delta-G solvation = -29988.167150 eV Core-core repulsion = 25791.702004 eV Total energy + Delta-G solvation = -4196.465146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.10949 -42.18651 -40.60388 -38.79517 -38.08095 -35.48094 -34.92011 -34.13106 -32.24580 -31.91536 -31.09767 -29.41590 -27.46885 -26.22459 -25.46810 -24.62920 -24.38845 -23.08462 -21.86697 -20.78905 -19.66341 -19.18312 -18.88275 -18.43116 -17.41786 -17.30520 -16.99063 -16.83505 -16.56256 -16.24200 -16.17519 -15.70028 -15.65582 -15.16590 -15.07029 -14.91373 -14.73021 -14.28153 -14.14956 -14.06919 -13.78831 -13.46985 -13.41755 -12.91995 -12.85672 -12.82522 -12.79597 -12.70706 -12.46930 -12.26736 -12.02711 -11.75272 -11.43144 -11.34293 -11.27555 -11.00176 -10.79382 -10.49864 -10.14962 -10.14171 -9.23222 -8.95503 -7.87077 -5.14036 -1.13962 -0.38144 0.47422 1.42322 1.50808 1.51942 1.56904 1.97734 2.10361 2.59993 2.88267 2.93746 3.28397 3.40835 3.47299 3.57129 3.63960 3.74101 3.83845 3.87777 3.93071 4.18838 4.29807 4.31095 4.33304 4.44558 4.47266 4.55712 4.66276 4.73914 4.77459 4.77631 4.91730 4.95571 5.00690 5.05674 5.08543 5.17844 5.28002 5.32532 5.45863 5.48858 5.61275 5.66955 5.68150 5.78589 6.32794 6.40257 6.93731 7.05602 7.41392 8.12563 8.37370 9.35265 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010571 B = 0.003401 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.069395 B = 8231.402936 C =10246.390585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.171 3.829 5 H 0.059 0.941 6 C 0.119 3.881 7 N -0.698 5.698 8 C 0.556 3.444 9 O -0.558 6.558 10 C -0.081 4.081 11 C -0.106 4.106 12 C 0.104 3.896 13 F -0.134 7.134 14 C -0.105 4.105 15 C -0.021 4.021 16 C -0.142 4.142 17 C 0.070 3.930 18 N -0.508 5.508 19 C 0.129 3.871 20 C -0.102 4.102 21 N -0.728 5.728 22 C -0.216 4.216 23 H 0.079 0.921 24 C -0.068 4.068 25 N -0.966 5.966 26 Si 0.954 3.046 27 H -0.283 1.283 28 H -0.305 1.305 29 H -0.279 1.279 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.410 0.590 40 H 0.149 0.851 41 H 0.185 0.815 42 H 0.185 0.815 43 H 0.188 0.812 44 H 0.184 0.816 45 H 0.373 0.627 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.197 5.498 9.538 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.199 4.199 4 C 0.062 3.938 5 H 0.077 0.923 6 C -0.005 4.005 7 N -0.349 5.349 8 C 0.344 3.656 9 O -0.440 6.440 10 C -0.086 4.086 11 C -0.126 4.126 12 C 0.084 3.916 13 F -0.112 7.112 14 C -0.124 4.124 15 C -0.027 4.027 16 C -0.161 4.161 17 C -0.074 4.074 18 N -0.216 5.216 19 C -0.040 4.040 20 C -0.105 4.105 21 N -0.368 5.368 22 C -0.348 4.348 23 H 0.097 0.903 24 C -0.260 4.260 25 N -0.617 5.617 26 Si 0.785 3.215 27 H -0.210 1.210 28 H -0.232 1.232 29 H -0.205 1.205 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.248 0.752 40 H 0.167 0.833 41 H 0.203 0.797 42 H 0.202 0.798 43 H 0.204 0.796 44 H 0.201 0.799 45 H 0.205 0.795 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.210 6.154 8.592 18.521 hybrid contribution -2.313 -1.472 0.838 2.867 sum 12.896 4.682 9.430 16.648 Atomic orbital electron populations 1.21737 0.95554 1.01707 1.00264 1.21613 0.96282 0.96341 0.98460 1.21859 1.01062 0.94858 1.02143 1.20711 0.90053 0.86085 0.96934 0.92339 1.21771 0.94628 0.95838 0.88220 1.45935 1.06195 1.52002 1.30721 1.18144 0.82707 0.80337 0.84397 1.90542 1.54896 1.50277 1.48303 1.19624 0.92996 1.00277 0.95724 1.21586 1.01381 0.96416 0.93220 1.17302 0.87638 0.97745 0.88946 1.91563 1.68056 1.85872 1.65754 1.21379 0.89935 1.00282 1.00766 1.18106 0.95514 0.95893 0.93159 1.22287 0.90589 1.01229 1.01992 1.22947 1.02364 0.92738 0.89320 1.67656 1.17247 1.14192 1.22549 1.24339 0.87326 0.94383 0.97942 1.18981 0.93207 1.00615 0.97709 1.42578 1.17432 1.03394 1.73370 1.19418 0.93467 0.91983 1.29887 0.90286 1.25305 1.01008 0.96229 1.03498 1.69787 1.38369 0.99653 1.53862 0.85496 0.81494 0.75917 0.78561 1.20993 1.23190 1.20503 0.93443 0.93156 0.93274 0.93042 0.92068 0.92213 0.92216 0.92483 0.89174 0.75207 0.83309 0.79737 0.79802 0.79557 0.79948 0.79545 0.94492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 8.27 71.98 0.60 -3.90 16 2 C -0.11 -3.27 2.69 -10.80 -0.03 -3.29 16 3 C -0.14 -3.36 8.84 71.98 0.64 -2.73 16 4 C 0.17 5.76 2.18 44.99 0.10 5.85 16 5 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 6 C 0.12 3.67 4.73 86.38 0.41 4.08 16 7 N -0.70 -21.71 5.34 -466.21 -2.49 -24.20 16 8 C 0.56 17.67 7.73 86.71 0.67 18.34 16 9 O -0.56 -19.65 13.47 -3.96 -0.05 -19.71 16 10 C -0.08 -2.31 5.90 -19.90 -0.12 -2.42 16 11 C -0.11 -2.76 9.48 22.61 0.21 -2.54 16 12 C 0.10 2.39 7.22 22.12 0.16 2.55 16 13 F -0.13 -3.25 17.24 44.97 0.78 -2.48 16 14 C -0.10 -1.91 9.75 22.37 0.22 -1.69 16 15 C -0.02 -0.45 5.74 -21.30 -0.12 -0.57 16 16 C -0.14 -2.21 9.88 22.41 0.22 -1.98 16 17 C 0.07 1.30 11.07 84.12 0.93 2.23 16 18 N -0.51 -13.50 10.30 -195.75 -2.02 -15.52 16 19 C 0.13 3.77 10.49 85.22 0.89 4.67 16 20 C -0.10 -2.78 5.76 -21.14 -0.12 -2.90 16 21 N -0.73 -31.60 4.43 -322.95 -1.43 -33.03 16 22 C -0.22 -10.48 7.58 84.03 0.64 -9.84 16 23 H 0.08 3.70 7.41 -2.91 -0.02 3.68 16 24 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 25 N -0.97 -55.45 13.06 21.65 0.28 -55.17 16 26 Si 0.95 43.66 29.55 68.60 2.03 45.68 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 29 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 30 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 2.01 6.02 -2.38 -0.01 1.99 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.36 6.55 -2.39 -0.02 1.34 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.09 2.46 6.71 -2.39 -0.02 2.45 16 39 H 0.41 12.94 6.21 -92.71 -0.58 12.36 16 40 H 0.15 3.82 6.42 -2.91 -0.02 3.80 16 41 H 0.19 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 43 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.18 5.93 4.97 -2.95 -0.01 5.91 16 45 H 0.37 18.17 7.80 -92.70 -0.72 17.44 16 46 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -63.13 379.02 2.60 -60.53 By element: Atomic # 1 Polarization: 41.41 SS G_CDS: -0.26 Total: 41.15 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 5.76 Total: 2.72 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -5.65 Total: -127.91 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.05 Total: -19.71 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -63.13 2.60 -60.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319914472.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.639 kcal (2) G-P(sol) polarization free energy of solvation -63.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds