Wall clock time and date at job start Wed Apr 1 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46985 * 2 1 4 4 C 1.50699 * 109.47006 * 120.00017 * 2 1 3 5 5 N 1.29944 * 126.29101 * 299.96990 * 4 2 1 6 6 O 1.21301 * 110.25179 * 180.02562 * 5 4 2 7 7 C 1.33635 * 109.81149 * 0.02562 * 6 5 4 8 8 C 1.50701 * 126.55162 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47341 * 270.02342 * 8 7 6 10 10 N 1.46497 * 109.47255 * 179.97438 * 9 8 7 11 11 C 1.34780 * 120.00244 * 180.02562 * 10 9 8 12 12 O 1.21582 * 119.99533 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00241 * 180.02562 * 11 10 9 14 14 C 1.39461 * 119.99942 * 174.98060 * 13 11 10 15 15 C 1.38636 * 119.64534 * 185.35978 * 14 13 11 16 16 C 1.40822 * 118.67176 * 179.97438 * 15 14 13 17 17 C 1.41549 * 120.99401 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99778 * 151.73057 * 17 16 15 19 19 C 1.40025 * 120.00344 * 331.72648 * 17 16 15 20 20 N 1.30738 * 120.00137 * 350.15817 * 19 17 16 21 21 Si 1.86802 * 119.99998 * 170.15704 * 19 17 16 22 22 H 1.48490 * 109.47227 * 59.99933 * 21 19 17 23 23 H 1.48504 * 109.46917 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47089 * 299.99779 * 21 19 17 25 25 C 1.41154 * 118.00596 * 0.02562 * 16 15 14 26 26 C 1.36590 * 119.13334 * 359.97438 * 25 16 15 27 27 N 1.32072 * 121.25172 * 359.72700 * 26 25 16 28 28 N 1.31139 * 106.90002 * 0.22294 * 7 6 5 29 29 H 1.09002 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47331 * 299.99933 * 1 2 3 31 31 H 1.08999 * 109.47346 * 59.99828 * 1 2 3 32 32 H 1.09004 * 109.46873 * 240.00285 * 2 1 3 33 33 H 1.09003 * 109.47422 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47219 * 300.00249 * 3 2 1 35 35 H 1.08996 * 109.47404 * 60.00250 * 3 2 1 36 36 H 1.09004 * 109.47003 * 30.02934 * 8 7 6 37 37 H 1.09001 * 109.47376 * 150.02226 * 8 7 6 38 38 H 1.09003 * 109.47259 * 299.99794 * 9 8 7 39 39 H 1.09001 * 109.46980 * 59.99642 * 9 8 7 40 40 H 0.97002 * 119.99929 * 0.02562 * 10 9 8 41 41 H 0.96997 * 119.99810 * 354.97569 * 13 11 10 42 42 H 1.07996 * 120.66925 * 0.02562 * 15 14 13 43 43 H 0.96997 * 120.00683 * 180.02562 * 20 19 17 44 44 H 1.08008 * 120.43819 * 179.97438 * 25 16 15 45 45 H 1.07991 * 119.37601 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7954 -0.3744 2.4631 6 8 2.3422 -1.1472 3.2215 7 6 3.0003 -2.0775 2.5234 8 6 3.8081 -3.2182 3.0869 9 6 5.2586 -2.7707 3.2775 10 7 6.0437 -3.8793 3.8258 11 6 7.3574 -3.7148 4.0783 12 8 7.8907 -2.6460 3.8514 13 7 8.0797 -4.7349 4.5823 14 6 9.4581 -4.5994 4.7455 15 6 10.2100 -5.6885 5.1587 16 6 11.6002 -5.5289 5.3164 17 6 12.4148 -6.6077 5.7364 18 1 13.4509 -6.6513 5.4348 19 6 11.8772 -7.6183 6.5429 20 7 10.6880 -7.4737 7.0664 21 14 12.8593 -9.1731 6.8708 22 1 14.1361 -8.8199 7.5417 23 1 12.0736 -10.0794 7.7465 24 1 13.1485 -9.8565 5.5844 25 6 12.1570 -4.2607 5.0441 26 6 11.3355 -3.2464 4.6416 27 7 10.0359 -3.4330 4.4985 28 7 2.8134 -1.8050 1.2544 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.3911 -3.5186 4.0482 37 1 3.7757 -4.0618 2.3974 38 1 5.6756 -2.4704 2.3162 39 1 5.2910 -1.9271 3.9670 40 1 5.6180 -4.7319 4.0072 41 1 7.6409 -5.5632 4.8315 42 1 9.7392 -6.6404 5.3550 43 1 10.3157 -8.1736 7.6253 44 1 13.2186 -4.0944 5.1525 45 1 11.7573 -2.2746 4.4318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413608008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:09 Heat of formation + Delta-G solvation = 68.976842 kcal Electronic energy + Delta-G solvation = -28199.696355 eV Core-core repulsion = 24027.611770 eV Total energy + Delta-G solvation = -4172.084585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.89514 -39.86069 -38.14366 -37.22868 -36.14179 -34.68989 -34.21101 -33.73815 -32.67527 -30.55290 -30.13421 -28.36081 -27.67312 -25.99705 -24.94170 -24.75390 -22.99366 -21.97956 -21.60356 -20.55698 -20.04033 -18.42255 -18.21276 -17.71823 -17.66297 -16.21509 -15.80245 -15.57475 -15.43615 -15.19919 -14.73694 -14.39432 -14.26865 -14.19495 -14.00321 -13.88958 -13.54613 -12.95616 -12.82374 -12.71816 -12.64228 -12.58770 -12.43038 -12.12311 -12.02165 -11.76189 -11.58562 -11.47318 -11.41919 -11.21703 -11.21236 -10.91522 -10.30159 -10.19300 -10.15970 -9.77703 -9.63323 -9.38369 -8.94789 -7.94967 -7.73477 -7.04195 -6.75836 -4.62592 0.81308 1.90048 2.36151 2.68896 2.81383 2.97842 3.00845 3.04037 3.24158 3.26987 3.70294 3.81374 3.86065 4.33775 4.42385 4.50784 4.57142 4.57235 4.65935 4.72385 4.84000 5.07196 5.14383 5.29117 5.32782 5.37124 5.52174 5.53210 5.63631 5.68062 5.68550 5.72345 5.83165 5.94178 6.49666 6.53478 6.60763 6.79190 6.94646 7.11398 7.22482 7.40771 7.47550 7.86040 7.86794 8.09463 8.34199 8.45142 8.71902 8.76084 9.11967 9.70962 10.10869 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.001642 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.303789 B =17050.469812 C =17720.370490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.005 4.005 3 C -0.146 4.146 4 C 0.175 3.825 5 N -0.380 5.380 6 O 0.081 5.919 7 C 0.189 3.811 8 C -0.039 4.039 9 C 0.147 3.853 10 N -0.754 5.754 11 C 0.693 3.307 12 O -0.530 6.530 13 N -0.666 5.666 14 C 0.353 3.647 15 C -0.239 4.239 16 C 0.145 3.855 17 C -0.457 4.457 18 H 0.081 0.919 19 C 0.076 3.924 20 N -0.797 5.797 21 Si 0.914 3.086 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.281 4.281 26 C 0.118 3.882 27 N -0.551 5.551 28 N -0.475 5.475 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.394 0.606 41 H 0.405 0.595 42 H 0.129 0.871 43 H 0.281 0.719 44 H 0.102 0.898 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.603 5.219 -8.624 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 C -0.204 4.204 4 C -0.098 4.098 5 N -0.086 5.086 6 O 0.022 5.978 7 C -0.032 4.032 8 C -0.078 4.078 9 C 0.021 3.979 10 N -0.413 5.413 11 C 0.392 3.608 12 O -0.400 6.400 13 N -0.314 5.314 14 C 0.127 3.873 15 C -0.265 4.265 16 C 0.136 3.864 17 C -0.489 4.489 18 H 0.099 0.901 19 C -0.141 4.141 20 N -0.423 5.423 21 Si 0.739 3.261 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.304 4.304 26 C -0.035 4.035 27 N -0.270 5.270 28 N -0.209 5.209 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.227 0.773 41 H 0.240 0.760 42 H 0.147 0.853 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.286 7.500 -9.213 23.508 hybrid contribution 0.549 -2.444 0.944 2.677 sum -19.736 5.057 -8.269 21.988 Atomic orbital electron populations 1.21850 0.92848 1.02544 1.03035 1.19582 0.96397 0.95522 0.90983 1.21860 1.01735 0.93832 1.03015 1.25856 0.96479 0.92802 0.94639 1.74591 1.17564 1.13584 1.02879 1.85319 1.47644 1.29598 1.35258 1.28392 0.94923 0.93930 0.85957 1.20378 0.92723 0.91324 1.03418 1.20922 0.86856 0.89729 1.00378 1.45013 1.08695 1.15766 1.71868 1.16013 0.80550 0.84848 0.79363 1.91033 1.69161 1.24519 1.55323 1.42517 1.06446 1.16692 1.65738 1.17961 0.81704 0.91377 0.96298 1.21545 0.95104 0.97783 1.12089 1.17569 0.91350 0.91354 0.86081 1.19531 0.97919 1.04194 1.27233 0.90102 1.25919 0.95011 0.99343 0.93875 1.69735 1.15828 1.32957 1.23792 0.86270 0.80275 0.80423 0.79175 1.18932 1.20308 1.18816 1.21714 0.99628 0.94751 1.14347 1.21488 0.88550 0.97478 0.96019 1.67206 1.12165 1.22636 1.25006 1.71941 1.16710 1.14260 1.17974 0.92308 0.91855 0.90979 0.87947 0.92073 0.90974 0.91829 0.87081 0.86385 0.90702 0.90882 0.77264 0.76039 0.85302 0.90798 0.87975 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.17 37.16 0.34 -0.58 16 2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 3 C -0.15 -1.03 9.18 37.16 0.34 -0.69 16 4 C 0.18 1.89 6.72 -156.37 -1.05 0.84 16 5 N -0.38 -4.41 12.16 30.90 0.38 -4.03 16 6 O 0.08 0.87 11.31 18.12 0.20 1.08 16 7 C 0.19 1.83 7.77 -13.05 -0.10 1.73 16 8 C -0.04 -0.26 5.96 -27.89 -0.17 -0.43 16 9 C 0.15 1.55 5.66 -4.05 -0.02 1.53 16 10 N -0.75 -8.96 5.56 -65.23 -0.36 -9.32 16 11 C 0.69 12.73 8.52 -86.92 -0.74 11.99 16 12 O -0.53 -12.32 14.60 5.29 0.08 -12.25 16 13 N -0.67 -12.61 5.40 -15.86 -0.09 -12.69 16 14 C 0.35 8.45 7.42 -154.68 -1.15 7.30 16 15 C -0.24 -5.96 8.60 -38.46 -0.33 -6.29 16 16 C 0.14 3.77 5.58 -106.55 -0.59 3.18 16 17 C -0.46 -11.63 9.13 -37.65 -0.34 -11.97 16 18 H 0.08 1.97 7.87 -52.48 -0.41 1.55 16 19 C 0.08 1.82 5.30 -17.35 -0.09 1.73 16 20 N -0.80 -19.33 10.83 55.55 0.60 -18.73 16 21 Si 0.91 17.75 29.57 -169.99 -5.03 12.72 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 23 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 25 C -0.28 -6.86 9.85 -39.07 -0.38 -7.24 16 26 C 0.12 2.85 11.10 -18.04 -0.20 2.65 16 27 N -0.55 -14.10 7.86 -12.76 -0.10 -14.20 16 28 N -0.48 -5.35 11.55 -9.87 -0.11 -5.46 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.39 3.16 8.49 -40.82 -0.35 2.81 16 41 H 0.41 6.08 8.71 -40.82 -0.36 5.73 16 42 H 0.13 3.17 6.28 -52.49 -0.33 2.84 16 43 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 44 H 0.10 2.29 8.06 -52.48 -0.42 1.86 16 45 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -34.20 388.81 -9.45 -43.66 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.07 Total: 9.98 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -4.81 Total: 3.39 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: 0.31 Total: -64.44 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.28 Total: -11.17 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.20 -9.45 -43.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413608008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.632 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds