Wall clock time and date at job start Wed Apr 1 2020 03:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46985 * 2 1 4 4 C 1.50699 * 109.47006 * 120.00017 * 2 1 3 5 5 N 1.29944 * 126.29101 * 299.96990 * 4 2 1 6 6 O 1.21301 * 110.25179 * 180.02562 * 5 4 2 7 7 C 1.33635 * 109.81149 * 0.02562 * 6 5 4 8 8 C 1.50701 * 126.55162 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47341 * 270.02342 * 8 7 6 10 10 N 1.46497 * 109.47255 * 179.97438 * 9 8 7 11 11 C 1.34780 * 120.00244 * 180.02562 * 10 9 8 12 12 O 1.21582 * 119.99533 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00241 * 180.02562 * 11 10 9 14 14 C 1.39461 * 119.99942 * 174.98060 * 13 11 10 15 15 C 1.38636 * 119.64534 * 185.35978 * 14 13 11 16 16 C 1.40822 * 118.67176 * 179.97438 * 15 14 13 17 17 C 1.41549 * 120.99401 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99778 * 151.73057 * 17 16 15 19 19 C 1.40025 * 120.00344 * 331.72648 * 17 16 15 20 20 N 1.30738 * 120.00137 * 350.15817 * 19 17 16 21 21 Si 1.86802 * 119.99998 * 170.15704 * 19 17 16 22 22 H 1.48490 * 109.47227 * 59.99933 * 21 19 17 23 23 H 1.48504 * 109.46917 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47089 * 299.99779 * 21 19 17 25 25 C 1.41154 * 118.00596 * 0.02562 * 16 15 14 26 26 C 1.36590 * 119.13334 * 359.97438 * 25 16 15 27 27 N 1.32072 * 121.25172 * 359.72700 * 26 25 16 28 28 N 1.31139 * 106.90002 * 0.22294 * 7 6 5 29 29 H 1.09002 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47331 * 299.99933 * 1 2 3 31 31 H 1.08999 * 109.47346 * 59.99828 * 1 2 3 32 32 H 1.09004 * 109.46873 * 240.00285 * 2 1 3 33 33 H 1.09003 * 109.47422 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47219 * 300.00249 * 3 2 1 35 35 H 1.08996 * 109.47404 * 60.00250 * 3 2 1 36 36 H 1.09004 * 109.47003 * 30.02934 * 8 7 6 37 37 H 1.09001 * 109.47376 * 150.02226 * 8 7 6 38 38 H 1.09003 * 109.47259 * 299.99794 * 9 8 7 39 39 H 1.09001 * 109.46980 * 59.99642 * 9 8 7 40 40 H 0.97002 * 119.99929 * 0.02562 * 10 9 8 41 41 H 0.96997 * 119.99810 * 354.97569 * 13 11 10 42 42 H 1.07996 * 120.66925 * 0.02562 * 15 14 13 43 43 H 0.96997 * 120.00683 * 180.02562 * 20 19 17 44 44 H 1.08008 * 120.43819 * 179.97438 * 25 16 15 45 45 H 1.07991 * 119.37601 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7954 -0.3744 2.4631 6 8 2.3422 -1.1472 3.2215 7 6 3.0003 -2.0775 2.5234 8 6 3.8081 -3.2182 3.0869 9 6 5.2586 -2.7707 3.2775 10 7 6.0437 -3.8793 3.8258 11 6 7.3574 -3.7148 4.0783 12 8 7.8907 -2.6460 3.8514 13 7 8.0797 -4.7349 4.5823 14 6 9.4581 -4.5994 4.7455 15 6 10.2100 -5.6885 5.1587 16 6 11.6002 -5.5289 5.3164 17 6 12.4148 -6.6077 5.7364 18 1 13.4509 -6.6513 5.4348 19 6 11.8772 -7.6183 6.5429 20 7 10.6880 -7.4737 7.0664 21 14 12.8593 -9.1731 6.8708 22 1 14.1361 -8.8199 7.5417 23 1 12.0736 -10.0794 7.7465 24 1 13.1485 -9.8565 5.5844 25 6 12.1570 -4.2607 5.0441 26 6 11.3355 -3.2464 4.6416 27 7 10.0359 -3.4330 4.4985 28 7 2.8134 -1.8050 1.2544 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.3911 -3.5186 4.0482 37 1 3.7757 -4.0618 2.3974 38 1 5.6756 -2.4704 2.3162 39 1 5.2910 -1.9271 3.9670 40 1 5.6180 -4.7319 4.0072 41 1 7.6409 -5.5632 4.8315 42 1 9.7392 -6.6404 5.3550 43 1 10.3157 -8.1736 7.6253 44 1 13.2186 -4.0944 5.1525 45 1 11.7573 -2.2746 4.4318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413608008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:08 Heat of formation + Delta-G solvation = 44.989654 kcal Electronic energy + Delta-G solvation = -28200.736518 eV Core-core repulsion = 24027.611770 eV Total energy + Delta-G solvation = -4173.124747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.70044 -41.40206 -39.84184 -37.92902 -37.14519 -36.05631 -35.48053 -35.45402 -33.57164 -32.39650 -31.24324 -29.92806 -28.19765 -27.87809 -25.74232 -25.68543 -23.92462 -23.74498 -23.10228 -21.79968 -21.07431 -19.65649 -19.40149 -19.19478 -18.56184 -17.77116 -17.09250 -16.81758 -16.51027 -16.13998 -16.03917 -15.93851 -15.63399 -15.48662 -15.08578 -14.88978 -14.56156 -14.46572 -14.31832 -14.20509 -13.68344 -13.46626 -13.23949 -13.16892 -12.85016 -12.72255 -12.67594 -12.65088 -12.50190 -12.31118 -12.13481 -12.07099 -11.89658 -11.89377 -11.48088 -11.30957 -11.14619 -10.97665 -10.14279 -9.86365 -9.60046 -8.82864 -8.55720 -6.54407 0.02665 0.85696 1.04009 1.09500 1.44148 1.46374 1.54893 1.60428 1.90559 2.23353 2.28935 2.53484 2.87673 2.97543 3.25409 3.65380 3.77868 3.78216 3.93191 4.00890 4.02932 4.17813 4.20369 4.46862 4.65024 4.65882 4.66097 4.72754 4.79836 4.81022 4.87149 4.88248 4.92428 4.95700 5.02304 5.13222 5.18993 5.25157 5.26622 5.39162 5.52018 5.67427 5.87336 6.01556 6.30486 6.58816 6.82261 6.86535 7.02278 7.08254 7.62961 7.91794 8.33395 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.001642 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.303789 B =17050.469812 C =17720.370490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 C -0.142 4.142 4 C 0.169 3.831 5 N -0.400 5.400 6 O 0.073 5.927 7 C 0.194 3.806 8 C -0.025 4.025 9 C 0.150 3.850 10 N -0.724 5.724 11 C 0.690 3.310 12 O -0.582 6.582 13 N -0.658 5.658 14 C 0.351 3.649 15 C -0.254 4.254 16 C 0.115 3.885 17 C -0.487 4.487 18 H 0.082 0.918 19 C 0.039 3.961 20 N -0.818 5.818 21 Si 0.988 3.012 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.260 1.260 25 C -0.294 4.294 26 C 0.112 3.888 27 N -0.577 5.577 28 N -0.498 5.498 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.418 0.582 41 H 0.423 0.577 42 H 0.128 0.872 43 H 0.291 0.709 44 H 0.115 0.885 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.829 3.659 -8.730 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.104 4.104 5 N -0.109 5.109 6 O 0.016 5.984 7 C -0.027 4.027 8 C -0.063 4.063 9 C 0.024 3.976 10 N -0.384 5.384 11 C 0.390 3.610 12 O -0.456 6.456 13 N -0.307 5.307 14 C 0.123 3.877 15 C -0.280 4.280 16 C 0.107 3.893 17 C -0.518 4.518 18 H 0.100 0.900 19 C -0.177 4.177 20 N -0.444 5.444 21 Si 0.809 3.191 22 H -0.187 1.187 23 H -0.190 1.190 24 H -0.184 1.184 25 C -0.318 4.318 26 C -0.042 4.042 27 N -0.297 5.297 28 N -0.232 5.232 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.256 0.744 41 H 0.261 0.739 42 H 0.146 0.854 43 H 0.102 0.898 44 H 0.133 0.867 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.591 5.900 -9.311 24.242 hybrid contribution 0.879 -1.921 0.971 2.325 sum -20.712 3.979 -8.340 22.680 Atomic orbital electron populations 1.21817 0.91591 1.02546 1.03687 1.19798 0.97416 0.95628 0.90066 1.21840 1.00874 0.93565 1.03737 1.26428 0.95983 0.92699 0.95283 1.74581 1.18612 1.14316 1.03345 1.85288 1.47940 1.29834 1.35352 1.28882 0.94345 0.93830 0.85668 1.20441 0.89483 0.90568 1.05843 1.20908 0.88823 0.89048 0.98850 1.44653 1.06405 1.17281 1.70040 1.16202 0.82101 0.83810 0.78902 1.91000 1.70806 1.26455 1.57371 1.42367 1.04925 1.17812 1.65600 1.18175 0.83612 0.90700 0.95176 1.21524 0.95102 0.98051 1.13301 1.18005 0.92322 0.92278 0.86687 1.19820 0.98255 1.05306 1.28412 0.89960 1.26759 0.96055 1.01961 0.92964 1.69769 1.16942 1.34128 1.23567 0.85155 0.78666 0.76136 0.79167 1.18719 1.19020 1.18418 1.21890 1.00420 0.94596 1.14915 1.21909 0.88432 0.98478 0.95334 1.67338 1.12835 1.23463 1.26087 1.71959 1.17422 1.14903 1.18882 0.92611 0.92793 0.88688 0.87241 0.93342 0.88546 0.92780 0.83589 0.84058 0.92705 0.92084 0.74438 0.73945 0.85440 0.89779 0.86693 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.17 71.98 0.66 -0.93 16 2 C -0.01 -0.14 3.39 -11.54 -0.04 -0.17 16 3 C -0.14 -1.91 9.18 71.98 0.66 -1.25 16 4 C 0.17 3.58 6.72 138.46 0.93 4.51 16 5 N -0.40 -9.25 12.16 -60.33 -0.73 -9.98 16 6 O 0.07 1.53 11.31 74.90 0.85 2.38 16 7 C 0.19 3.50 7.77 88.38 0.69 4.19 16 8 C -0.02 -0.26 5.96 29.85 0.18 -0.09 16 9 C 0.15 2.96 5.66 86.38 0.49 3.45 16 10 N -0.72 -15.88 5.56 -478.55 -2.66 -18.54 16 11 C 0.69 24.99 8.52 179.05 1.53 26.52 16 12 O -0.58 -27.41 14.60 -3.97 -0.06 -27.46 16 13 N -0.66 -24.59 5.40 -322.37 -1.74 -26.32 16 14 C 0.35 16.99 7.42 132.76 0.98 17.98 16 15 C -0.25 -12.83 8.60 23.00 0.20 -12.64 16 16 C 0.12 6.12 5.58 -21.11 -0.12 6.00 16 17 C -0.49 -24.97 9.13 23.52 0.21 -24.75 16 18 H 0.08 4.04 7.87 -2.91 -0.02 4.02 16 19 C 0.04 1.83 5.30 85.29 0.45 2.28 16 20 N -0.82 -39.28 10.83 21.84 0.24 -39.05 16 21 Si 0.99 35.44 29.57 68.60 2.03 37.46 16 22 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 23 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 24 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 25 C -0.29 -14.64 9.85 22.60 0.22 -14.42 16 26 C 0.11 5.45 11.10 84.27 0.94 6.39 16 27 N -0.58 -29.98 7.86 -194.28 -1.53 -31.51 16 28 N -0.50 -10.84 11.55 -303.20 -3.50 -14.34 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.42 5.36 8.49 -92.71 -0.79 4.57 16 41 H 0.42 12.19 8.71 -92.71 -0.81 11.38 16 42 H 0.13 6.33 6.28 -2.91 -0.02 6.32 16 43 H 0.29 12.51 8.29 -92.71 -0.77 11.74 16 44 H 0.12 5.22 8.06 -2.91 -0.02 5.20 16 45 H 0.15 6.17 8.06 -2.92 -0.02 6.15 16 Total: -1.00 -76.49 388.81 0.33 -76.16 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.55 Total: 34.13 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 7.98 Total: 17.07 kcal Atomic # 7 Polarization: -129.81 SS G_CDS: -9.93 Total: -139.74 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: 0.79 Total: -25.08 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.46 kcal Total: -76.49 0.33 -76.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413608008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.149 kcal (2) G-P(sol) polarization free energy of solvation -76.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds