Wall clock time and date at job start Wed Apr 1 2020 02:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30293 * 126.34641 * 2 1 4 4 N 1.28529 * 110.05131 * 180.02562 * 3 2 1 5 5 C 1.31219 * 109.85882 * 359.74911 * 4 3 2 6 6 N 1.38580 * 126.46999 * 180.25375 * 5 4 3 7 7 C 1.46895 * 111.00419 * 258.82706 * 6 5 4 8 8 C 1.46904 * 110.99970 * 22.78452 * 6 5 4 9 9 H 1.09001 * 109.47095 * 299.99283 * 8 6 5 10 10 C 1.52998 * 109.47516 * 59.99437 * 8 6 5 11 11 C 1.50705 * 109.47051 * 179.97438 * 8 6 5 12 12 H 1.07996 * 119.99731 * 359.97438 * 11 8 6 13 13 C 1.37871 * 120.00013 * 179.97438 * 11 8 6 14 14 N 1.31516 * 120.00122 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00092 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.46779 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47175 * 119.99847 * 15 13 11 18 18 H 1.48497 * 109.47109 * 239.99865 * 15 13 11 19 19 N 1.36446 * 107.05336 * 0.40036 * 5 4 3 20 20 C 1.46503 * 127.13508 * 179.87431 * 19 5 4 21 21 C 1.52997 * 109.47208 * 263.52318 * 20 19 5 22 22 S 1.81406 * 109.47073 * 173.83393 * 21 20 19 23 23 O 1.42097 * 110.54124 * 291.62393 * 22 21 20 24 24 O 1.42099 * 110.54120 * 68.37157 * 22 21 20 25 25 N 1.65599 * 104.44858 * 179.97438 * 22 21 20 26 26 C 1.46495 * 119.99943 * 89.99906 * 25 22 21 27 27 C 1.46494 * 119.99852 * 269.99731 * 25 22 21 28 28 H 1.08997 * 109.46872 * 269.95169 * 1 2 3 29 29 H 1.09001 * 109.46989 * 29.95593 * 1 2 3 30 30 H 1.08997 * 109.46769 * 149.95319 * 1 2 3 31 31 H 1.09003 * 109.47195 * 53.29650 * 7 6 5 32 32 H 1.08997 * 109.47453 * 173.30294 * 7 6 5 33 33 H 1.09004 * 109.47000 * 293.30318 * 7 6 5 34 34 H 1.08999 * 109.47363 * 179.97438 * 10 8 6 35 35 H 1.08996 * 109.46979 * 300.00466 * 10 8 6 36 36 H 1.09010 * 109.46539 * 59.99999 * 10 8 6 37 37 H 0.96997 * 120.00399 * 180.02562 * 14 13 11 38 38 H 1.09004 * 109.47402 * 143.52042 * 20 19 5 39 39 H 1.09008 * 109.47055 * 23.52295 * 20 19 5 40 40 H 1.08997 * 109.47295 * 53.83414 * 21 20 19 41 41 H 1.08996 * 109.47132 * 293.82784 * 21 20 19 42 42 H 1.09005 * 109.47551 * 89.99962 * 26 25 22 43 43 H 1.08997 * 109.47468 * 209.99813 * 26 25 22 44 44 H 1.09000 * 109.47356 * 329.99938 * 26 25 22 45 45 H 1.08999 * 109.47407 * 0.02562 * 27 25 22 46 46 H 1.09006 * 109.47114 * 120.00188 * 27 25 22 47 47 H 1.09001 * 109.47081 * 240.00087 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5130 0.6888 -0.0005 5 6 3.5945 -0.6208 0.0045 6 7 4.7580 -1.3737 0.0105 7 6 5.0595 -1.8877 -1.3321 8 6 5.8854 -0.5961 0.5420 9 1 6.0432 0.2859 -0.0787 10 6 5.5746 -0.1618 1.9757 11 6 7.1300 -1.4459 0.5337 12 1 7.0875 -2.4621 0.1703 13 6 8.3227 -0.9262 0.9899 14 7 8.3745 0.3114 1.4319 15 14 9.8652 -1.9797 0.9802 16 1 9.5429 -3.3241 0.4379 17 1 10.8980 -1.3374 0.1282 18 1 10.3809 -2.1150 2.3661 19 7 2.3175 -1.1013 -0.0007 20 6 1.9010 -2.5059 -0.0006 21 6 1.6066 -2.9507 -1.4346 22 16 1.2683 -4.7328 -1.4575 23 8 2.4462 -5.4678 -1.1554 24 8 0.0398 -5.0155 -0.8016 25 7 0.9690 -5.0761 -3.0496 26 6 2.0706 -5.4598 -3.9358 27 6 -0.3974 -4.9960 -3.5719 28 1 -0.3633 -0.0009 1.0277 29 1 -0.3633 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5146 31 1 5.0697 -1.0619 -2.0435 32 1 6.0354 -2.3730 -1.3247 33 1 4.2969 -2.6097 -1.6244 34 1 6.4113 0.4148 2.3702 35 1 4.6744 0.4527 1.9821 36 1 5.4169 -1.0439 2.5965 37 1 9.2136 0.6773 1.7525 38 1 1.0026 -2.6185 0.6064 39 1 2.6992 -3.1216 0.4142 40 1 2.4690 -2.7365 -2.0657 41 1 0.7377 -2.4111 -1.8112 42 1 2.1938 -6.5427 -3.9145 43 1 1.8468 -5.1397 -4.9534 44 1 2.9909 -4.9827 -3.5990 45 1 -1.0751 -4.6973 -2.7722 46 1 -0.4369 -4.2600 -4.3750 47 1 -0.6967 -5.9707 -3.9572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417467311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:37 Heat of formation + Delta-G solvation = 38.925490 kcal Electronic energy + Delta-G solvation = -29985.530520 eV Core-core repulsion = 25947.586762 eV Total energy + Delta-G solvation = -4037.943758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.60992 -37.55837 -37.16721 -36.67365 -36.25654 -35.83425 -32.99389 -31.63443 -30.93187 -29.29538 -28.54896 -27.46658 -25.38899 -25.30045 -24.46359 -24.32718 -21.93034 -20.46968 -19.54638 -19.31557 -18.17215 -17.27475 -16.80694 -16.63840 -16.08872 -15.94958 -15.45079 -15.30852 -14.85953 -14.69129 -14.54363 -13.91690 -13.82718 -13.60045 -13.38548 -13.17439 -12.97305 -12.85939 -12.82472 -12.72863 -12.45444 -12.38649 -12.05418 -12.04150 -11.97087 -11.92023 -11.53388 -11.12797 -10.99610 -10.94599 -10.69056 -10.34698 -10.25034 -10.10021 -10.05024 -9.89144 -9.53284 -9.22785 -8.65232 -8.47841 -7.55556 -6.06316 -4.13926 -0.26105 2.03728 2.17522 2.51623 3.27537 3.29751 3.35597 3.38544 3.39683 3.68707 3.95665 4.16989 4.27336 4.30427 4.52309 4.55242 4.68004 4.77935 4.88303 4.94177 5.04999 5.13057 5.20795 5.26500 5.31998 5.38253 5.41353 5.46090 5.58645 5.67812 5.83664 5.98966 6.01324 6.07156 6.27865 6.47249 6.82084 6.92753 7.07910 7.15387 7.40223 7.63685 7.71924 7.93145 8.21530 8.40979 8.88426 9.24000 9.50986 11.00180 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.003742 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.170263 B = 7481.791309 C = 9242.390625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.149 3.851 3 N -0.285 5.285 4 N -0.311 5.311 5 C 0.385 3.615 6 N -0.464 5.464 7 C 0.037 3.963 8 C 0.228 3.772 9 H 0.026 0.974 10 C -0.134 4.134 11 C -0.517 4.517 12 H 0.067 0.933 13 C 0.064 3.936 14 N -0.884 5.884 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.283 1.283 19 N -0.478 5.478 20 C 0.129 3.871 21 C -0.660 4.660 22 S 2.616 3.384 23 O -0.935 6.935 24 O -0.948 6.948 25 N -1.006 6.006 26 C 0.091 3.909 27 C 0.084 3.916 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.104 0.896 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.018 0.982 36 H 0.027 0.973 37 H 0.262 0.738 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.194 -10.089 -10.893 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 N -0.125 5.125 4 N -0.154 5.154 5 C 0.029 3.971 6 N -0.189 5.189 7 C -0.110 4.110 8 C 0.124 3.876 9 H 0.044 0.956 10 C -0.192 4.192 11 C -0.556 4.556 12 H 0.085 0.915 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.209 1.209 19 N -0.175 5.175 20 C 0.003 3.997 21 C -0.788 4.788 22 S 2.706 3.294 23 O -0.925 6.925 24 O -0.938 6.938 25 N -0.845 5.845 26 C -0.055 4.055 27 C -0.062 4.062 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.122 0.878 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.037 0.963 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.135 0.865 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.673 -9.507 -9.840 23.149 hybrid contribution 0.686 -0.625 -0.813 1.234 sum -17.987 -10.132 -10.653 23.231 Atomic orbital electron populations 1.20120 0.84318 1.03758 1.03698 1.24622 0.96257 0.82750 1.08232 1.73982 0.97042 1.24081 1.17374 1.74833 1.10642 1.07734 1.22238 1.23128 0.85222 0.89141 0.99569 1.59155 1.01290 1.36102 1.22396 1.22418 1.03136 0.98533 0.86922 1.19375 0.83707 0.91719 0.92785 0.95578 1.21828 1.00376 0.99198 0.97827 1.21107 0.91894 0.99204 1.43370 0.91470 1.24903 0.98945 0.95072 0.94939 1.69928 1.26424 1.13912 1.41900 0.86414 0.82695 0.80370 0.77773 1.19618 1.21017 1.20926 1.46135 1.06579 1.06736 1.58039 1.21279 1.03703 0.81664 0.93017 1.31309 1.13047 1.28542 1.05886 1.05071 0.74576 0.76782 0.73013 1.93663 1.49747 1.67011 1.82065 1.93606 1.44680 1.82928 1.72562 1.57349 1.14255 1.83238 1.29649 1.21531 0.88036 1.01338 0.94551 1.21607 0.81157 1.02787 1.00604 0.89930 0.88971 0.91156 0.95301 0.87780 0.93873 0.89094 0.96270 0.95384 0.92758 0.87605 0.86518 0.84013 0.84345 0.91885 0.90781 0.90625 0.89531 0.92004 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.21 36.01 0.37 -0.21 16 2 C 0.15 2.34 8.07 -154.02 -1.24 1.10 16 3 N -0.28 -5.76 12.18 32.99 0.40 -5.36 16 4 N -0.31 -7.14 10.15 30.31 0.31 -6.83 16 5 C 0.38 7.96 5.96 -318.88 -1.90 6.06 16 6 N -0.46 -10.07 4.61 -176.08 -0.81 -10.88 16 7 C 0.04 0.69 9.39 60.06 0.56 1.26 16 8 C 0.23 5.87 1.73 -68.86 -0.12 5.75 16 9 H 0.03 0.76 7.90 -51.93 -0.41 0.35 16 10 C -0.13 -3.50 8.80 37.16 0.33 -3.17 16 11 C -0.52 -13.80 7.79 -34.44 -0.27 -14.07 16 12 H 0.07 1.74 6.46 -52.49 -0.34 1.40 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 14 N -0.88 -25.19 11.32 55.43 0.63 -24.56 16 15 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 N -0.48 -7.70 2.81 -114.08 -0.32 -8.02 16 20 C 0.13 1.54 5.84 -4.04 -0.02 1.52 16 21 C -0.66 -5.84 6.43 37.16 0.24 -5.60 16 22 S 2.62 25.05 5.37 -107.50 -0.58 24.48 16 23 O -0.93 -12.37 17.09 -57.54 -0.98 -13.35 16 24 O -0.95 -10.81 16.57 -57.54 -0.95 -11.76 16 25 N -1.01 -7.30 3.52 -129.21 -0.45 -7.75 16 26 C 0.09 0.57 10.24 59.84 0.61 1.18 16 27 C 0.08 0.43 10.62 59.84 0.64 1.07 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.48 7.53 -51.93 -0.39 0.09 16 31 H 0.03 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.10 2.01 5.92 -51.93 -0.31 1.70 16 33 H 0.04 0.64 6.14 -51.93 -0.32 0.32 16 34 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 35 H 0.02 0.48 6.32 -51.93 -0.33 0.15 16 36 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.11 0.95 8.09 -51.93 -0.42 0.53 16 39 H 0.12 1.50 8.09 -51.92 -0.42 1.08 16 40 H 0.14 1.30 6.24 -51.93 -0.32 0.97 16 41 H 0.14 0.86 7.70 -51.93 -0.40 0.46 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 44 H 0.08 0.48 7.79 -51.93 -0.40 0.08 16 45 H 0.09 0.44 6.87 -51.93 -0.36 0.08 16 46 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -37.08 389.29 -10.07 -47.15 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.25 Total: -1.34 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.90 Total: -3.48 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -0.25 Total: -63.42 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -1.94 Total: -25.11 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 25.05 SS G_CDS: -0.58 Total: 24.48 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.08 -10.07 -47.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417467311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.074 kcal (2) G-P(sol) polarization free energy of solvation -37.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds