Wall clock time and date at job start Wed Apr 1 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30293 * 126.34641 * 2 1 4 4 N 1.28529 * 110.05131 * 180.02562 * 3 2 1 5 5 C 1.31219 * 109.85882 * 359.74911 * 4 3 2 6 6 N 1.38580 * 126.46999 * 180.25375 * 5 4 3 7 7 C 1.46895 * 111.00419 * 258.82706 * 6 5 4 8 8 C 1.46904 * 110.99970 * 22.78452 * 6 5 4 9 9 H 1.09001 * 109.47095 * 299.99283 * 8 6 5 10 10 C 1.52998 * 109.47516 * 59.99437 * 8 6 5 11 11 C 1.50705 * 109.47051 * 179.97438 * 8 6 5 12 12 H 1.07996 * 119.99731 * 359.97438 * 11 8 6 13 13 C 1.37871 * 120.00013 * 179.97438 * 11 8 6 14 14 N 1.31516 * 120.00122 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00092 * 179.97438 * 13 11 8 16 16 H 1.48497 * 109.46779 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47175 * 119.99847 * 15 13 11 18 18 H 1.48497 * 109.47109 * 239.99865 * 15 13 11 19 19 N 1.36446 * 107.05336 * 0.40036 * 5 4 3 20 20 C 1.46503 * 127.13508 * 179.87431 * 19 5 4 21 21 C 1.52997 * 109.47208 * 263.52318 * 20 19 5 22 22 S 1.81406 * 109.47073 * 173.83393 * 21 20 19 23 23 O 1.42097 * 110.54124 * 291.62393 * 22 21 20 24 24 O 1.42099 * 110.54120 * 68.37157 * 22 21 20 25 25 N 1.65599 * 104.44858 * 179.97438 * 22 21 20 26 26 C 1.46495 * 119.99943 * 89.99906 * 25 22 21 27 27 C 1.46494 * 119.99852 * 269.99731 * 25 22 21 28 28 H 1.08997 * 109.46872 * 269.95169 * 1 2 3 29 29 H 1.09001 * 109.46989 * 29.95593 * 1 2 3 30 30 H 1.08997 * 109.46769 * 149.95319 * 1 2 3 31 31 H 1.09003 * 109.47195 * 53.29650 * 7 6 5 32 32 H 1.08997 * 109.47453 * 173.30294 * 7 6 5 33 33 H 1.09004 * 109.47000 * 293.30318 * 7 6 5 34 34 H 1.08999 * 109.47363 * 179.97438 * 10 8 6 35 35 H 1.08996 * 109.46979 * 300.00466 * 10 8 6 36 36 H 1.09010 * 109.46539 * 59.99999 * 10 8 6 37 37 H 0.96997 * 120.00399 * 180.02562 * 14 13 11 38 38 H 1.09004 * 109.47402 * 143.52042 * 20 19 5 39 39 H 1.09008 * 109.47055 * 23.52295 * 20 19 5 40 40 H 1.08997 * 109.47295 * 53.83414 * 21 20 19 41 41 H 1.08996 * 109.47132 * 293.82784 * 21 20 19 42 42 H 1.09005 * 109.47551 * 89.99962 * 26 25 22 43 43 H 1.08997 * 109.47468 * 209.99813 * 26 25 22 44 44 H 1.09000 * 109.47356 * 329.99938 * 26 25 22 45 45 H 1.08999 * 109.47407 * 0.02562 * 27 25 22 46 46 H 1.09006 * 109.47114 * 120.00188 * 27 25 22 47 47 H 1.09001 * 109.47081 * 240.00087 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5130 0.6888 -0.0005 5 6 3.5945 -0.6208 0.0045 6 7 4.7580 -1.3737 0.0105 7 6 5.0595 -1.8877 -1.3321 8 6 5.8854 -0.5961 0.5420 9 1 6.0432 0.2859 -0.0787 10 6 5.5746 -0.1618 1.9757 11 6 7.1300 -1.4459 0.5337 12 1 7.0875 -2.4621 0.1703 13 6 8.3227 -0.9262 0.9899 14 7 8.3745 0.3114 1.4319 15 14 9.8652 -1.9797 0.9802 16 1 9.5429 -3.3241 0.4379 17 1 10.8980 -1.3374 0.1282 18 1 10.3809 -2.1150 2.3661 19 7 2.3175 -1.1013 -0.0007 20 6 1.9010 -2.5059 -0.0006 21 6 1.6066 -2.9507 -1.4346 22 16 1.2683 -4.7328 -1.4575 23 8 2.4462 -5.4678 -1.1554 24 8 0.0398 -5.0155 -0.8016 25 7 0.9690 -5.0761 -3.0496 26 6 2.0706 -5.4598 -3.9358 27 6 -0.3974 -4.9960 -3.5719 28 1 -0.3633 -0.0009 1.0277 29 1 -0.3633 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5146 31 1 5.0697 -1.0619 -2.0435 32 1 6.0354 -2.3730 -1.3247 33 1 4.2969 -2.6097 -1.6244 34 1 6.4113 0.4148 2.3702 35 1 4.6744 0.4527 1.9821 36 1 5.4169 -1.0439 2.5965 37 1 9.2136 0.6773 1.7525 38 1 1.0026 -2.6185 0.6064 39 1 2.6992 -3.1216 0.4142 40 1 2.4690 -2.7365 -2.0657 41 1 0.7377 -2.4111 -1.8112 42 1 2.1938 -6.5427 -3.9145 43 1 1.8468 -5.1397 -4.9534 44 1 2.9909 -4.9827 -3.5990 45 1 -1.0751 -4.6973 -2.7722 46 1 -0.4369 -4.2600 -4.3750 47 1 -0.6967 -5.9707 -3.9572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417467311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:36 Heat of formation + Delta-G solvation = 12.220323 kcal Electronic energy + Delta-G solvation = -29986.688543 eV Core-core repulsion = 25947.586762 eV Total energy + Delta-G solvation = -4039.101781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.01043 -38.90330 -38.38544 -37.31169 -37.05941 -36.88269 -34.94874 -32.78477 -32.07848 -31.23083 -28.96166 -28.81053 -27.19523 -26.12442 -26.01082 -25.21050 -23.64602 -21.70885 -21.20618 -20.02189 -19.02260 -18.42672 -18.09169 -17.59373 -17.45686 -17.33313 -16.88453 -16.41326 -16.09732 -15.61721 -15.42441 -15.36511 -15.04607 -14.75071 -14.39321 -14.31573 -14.01561 -13.91212 -13.55692 -13.52254 -13.42736 -13.39989 -13.25346 -13.05329 -12.87027 -12.82001 -12.76160 -12.62438 -12.61749 -12.53005 -12.25242 -12.12614 -12.06778 -12.03802 -11.49961 -11.22132 -11.09703 -10.59991 -10.30202 -10.05354 -9.22550 -8.14419 -6.29530 -1.00140 0.74356 1.23618 1.44222 1.45853 1.53912 1.58189 1.84348 2.40700 2.64396 2.95154 2.98822 3.16441 3.16792 3.35675 3.50014 3.79838 3.83009 3.94938 4.05817 4.18685 4.34474 4.48676 4.48889 4.59327 4.64097 4.70285 4.75000 4.77115 4.78637 4.87665 4.94585 4.97019 4.99890 5.00733 5.05530 5.05831 5.12505 5.40020 5.51576 5.55525 5.63318 5.87872 5.95719 6.13620 6.55744 6.80892 7.39535 7.80058 8.92825 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.003742 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.170263 B = 7481.791309 C = 9242.390625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.178 3.822 3 N -0.334 5.334 4 N -0.361 5.361 5 C 0.363 3.637 6 N -0.464 5.464 7 C 0.037 3.963 8 C 0.240 3.760 9 H -0.019 1.019 10 C -0.117 4.117 11 C -0.527 4.527 12 H 0.075 0.925 13 C 0.014 3.986 14 N -0.919 5.919 15 Si 0.969 3.031 16 H -0.259 1.259 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.469 5.469 20 C 0.111 3.889 21 C -0.649 4.649 22 S 2.633 3.367 23 O -0.977 6.977 24 O -0.966 6.966 25 N -1.003 6.003 26 C 0.081 3.919 27 C 0.074 3.926 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.020 0.980 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.015 0.985 36 H 0.028 0.972 37 H 0.263 0.737 38 H 0.142 0.858 39 H 0.103 0.897 40 H 0.140 0.860 41 H 0.174 0.826 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.604 -11.970 -12.237 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.091 4.091 3 N -0.173 5.173 4 N -0.204 5.204 5 C 0.006 3.994 6 N -0.189 5.189 7 C -0.110 4.110 8 C 0.134 3.866 9 H -0.001 1.001 10 C -0.175 4.175 11 C -0.565 4.565 12 H 0.093 0.907 13 C -0.186 4.186 14 N -0.558 5.558 15 Si 0.794 3.206 16 H -0.183 1.183 17 H -0.207 1.207 18 H -0.208 1.208 19 N -0.165 5.165 20 C -0.013 4.013 21 C -0.778 4.778 22 S 2.724 3.276 23 O -0.967 6.967 24 O -0.956 6.956 25 N -0.843 5.843 26 C -0.064 4.064 27 C -0.071 4.071 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.038 0.962 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.160 0.840 39 H 0.122 0.878 40 H 0.158 0.842 41 H 0.192 0.808 42 H 0.078 0.922 43 H 0.118 0.882 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.125 -11.424 -11.198 26.498 hybrid contribution 1.240 -0.031 -0.456 1.321 sum -19.885 -11.455 -11.654 25.738 Atomic orbital electron populations 1.20536 0.79536 1.06353 1.05774 1.25806 0.98335 0.81423 1.03487 1.73889 0.96649 1.26218 1.20590 1.74691 1.12681 1.09458 1.23566 1.22942 0.86282 0.88936 1.01275 1.59056 1.00648 1.35297 1.23900 1.22487 1.04073 0.98859 0.85549 1.18957 0.85404 0.90544 0.91658 1.00095 1.21605 0.99028 0.98586 0.98326 1.21397 0.92482 0.99522 1.43117 0.90726 1.25783 1.02184 0.96163 0.94457 1.70078 1.27217 1.15700 1.42796 0.85341 0.78557 0.79064 0.77679 1.18319 1.20661 1.20810 1.46274 1.04795 1.08501 1.56949 1.21733 1.04862 0.79037 0.95711 1.31231 1.14534 1.28068 1.03924 1.04345 0.73262 0.76653 0.73359 1.93612 1.51391 1.68519 1.83213 1.93577 1.45060 1.83376 1.73612 1.57166 1.15434 1.82964 1.28786 1.21718 0.87741 1.01296 0.95660 1.21869 0.79773 1.04066 1.01364 0.87938 0.87683 0.87270 0.96161 0.88746 0.89882 0.91591 0.96636 0.95322 0.92747 0.83979 0.87819 0.84183 0.80849 0.92210 0.88209 0.90997 0.89356 0.89627 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.21 71.24 0.73 -0.21 16 2 C 0.18 5.22 8.07 137.64 1.11 6.33 16 3 N -0.33 -13.56 12.18 -49.53 -0.60 -14.17 16 4 N -0.36 -17.11 10.15 -58.01 -0.59 -17.70 16 5 C 0.36 15.17 5.96 260.11 1.55 16.72 16 6 N -0.46 -20.54 4.61 -711.00 -3.28 -23.81 16 7 C 0.04 1.39 9.39 127.69 1.20 2.59 16 8 C 0.24 12.89 1.73 44.17 0.08 12.97 16 9 H -0.02 -1.15 7.90 -2.39 -0.02 -1.17 16 10 C -0.12 -6.40 8.80 71.98 0.63 -5.76 16 11 C -0.53 -28.74 7.79 25.60 0.20 -28.55 16 12 H 0.07 3.88 6.46 -2.91 -0.02 3.86 16 13 C 0.01 0.75 5.30 84.65 0.45 1.20 16 14 N -0.92 -54.21 11.32 21.45 0.24 -53.96 16 15 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 16 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 N -0.47 -14.32 2.81 -514.83 -1.45 -15.77 16 20 C 0.11 2.33 5.84 86.38 0.50 2.84 16 21 C -0.65 -9.28 6.43 71.98 0.46 -8.82 16 22 S 2.63 44.12 5.37 -56.49 -0.30 43.82 16 23 O -0.98 -24.80 17.09 -127.65 -2.18 -26.98 16 24 O -0.97 -19.47 16.57 -127.65 -2.11 -21.59 16 25 N -1.00 -11.71 3.52 -562.70 -1.98 -13.69 16 26 C 0.08 0.82 10.24 127.77 1.31 2.13 16 27 C 0.07 0.50 10.62 127.77 1.36 1.86 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.11 0.82 7.53 -2.39 -0.02 0.80 16 31 H 0.02 0.77 8.10 -2.39 -0.02 0.75 16 32 H 0.09 3.67 5.92 -2.39 -0.01 3.66 16 33 H 0.08 2.37 6.14 -2.39 -0.01 2.35 16 34 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 35 H 0.01 0.81 6.32 -2.39 -0.02 0.79 16 36 H 0.03 1.48 8.14 -2.38 -0.02 1.47 16 37 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 38 H 0.14 1.95 8.09 -2.38 -0.02 1.93 16 39 H 0.10 2.51 8.09 -2.38 -0.02 2.49 16 40 H 0.14 2.14 6.24 -2.39 -0.01 2.12 16 41 H 0.17 1.22 7.70 -2.39 -0.02 1.21 16 42 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.10 0.49 8.07 -2.39 -0.02 0.47 16 44 H 0.07 0.79 7.79 -2.39 -0.02 0.77 16 45 H 0.09 0.59 6.87 -2.39 -0.02 0.57 16 46 H 0.09 0.19 8.14 -2.38 -0.02 0.18 16 47 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -85.59 389.29 0.33 -85.26 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.97 Total: 10.04 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 9.58 Total: 3.29 kcal Atomic # 7 Polarization: -131.45 SS G_CDS: -7.65 Total: -139.10 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -4.30 Total: -48.57 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 44.12 SS G_CDS: -0.30 Total: 43.82 kcal Total: -85.59 0.33 -85.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417467311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.482 kcal (2) G-P(sol) polarization free energy of solvation -85.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds