Wall clock time and date at job start Wed Apr 1 2020 03:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47506 * 2 1 4 4 N 1.30304 * 126.34315 * 270.16009 * 3 2 1 5 5 N 1.28533 * 110.04658 * 180.30896 * 4 3 2 6 6 C 1.31214 * 109.86231 * 359.71180 * 5 4 3 7 7 N 1.38586 * 126.47372 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99669 * 307.29972 * 7 6 5 9 9 C 1.46905 * 110.99752 * 71.24696 * 7 6 5 10 10 H 1.09000 * 109.46763 * 55.00462 * 9 7 6 11 11 C 1.52995 * 109.47221 * 295.00563 * 9 7 6 12 12 C 1.50693 * 109.46937 * 175.00135 * 9 7 6 13 13 H 1.08001 * 120.00517 * 0.02562 * 12 9 7 14 14 C 1.37884 * 120.00051 * 180.02562 * 12 9 7 15 15 N 1.31515 * 119.99707 * 359.97438 * 14 12 9 16 16 Si 1.86794 * 120.00351 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47077 * 59.99785 * 16 14 12 18 18 H 1.48498 * 109.47177 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47119 * 300.00181 * 16 14 12 20 20 N 1.36451 * 107.05834 * 0.02562 * 6 5 4 21 21 C 1.46499 * 127.14126 * 179.97438 * 20 6 5 22 22 C 1.52998 * 109.47031 * 85.70863 * 21 20 6 23 23 S 1.81400 * 109.47193 * 180.02562 * 22 21 20 24 24 O 1.42108 * 110.54023 * 291.62732 * 23 22 21 25 25 O 1.42095 * 110.54441 * 68.37544 * 23 22 21 26 26 N 1.65598 * 104.45037 * 180.02562 * 23 22 21 27 27 C 1.46499 * 120.00146 * 65.00147 * 26 23 22 28 28 H 1.09005 * 109.46667 * 299.99863 * 1 2 3 29 29 H 1.08996 * 109.47008 * 59.99977 * 1 2 3 30 30 H 1.08998 * 109.46899 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47292 * 239.99716 * 2 1 3 32 32 H 1.09004 * 109.47798 * 120.00225 * 2 1 3 33 33 H 1.08998 * 109.47768 * 62.11526 * 8 7 6 34 34 H 1.09005 * 109.46794 * 182.11147 * 8 7 6 35 35 H 1.09000 * 109.46961 * 302.10530 * 8 7 6 36 36 H 1.09000 * 109.47170 * 299.99649 * 11 9 7 37 37 H 1.09000 * 109.47609 * 59.99518 * 11 9 7 38 38 H 1.09001 * 109.47351 * 180.02562 * 11 9 7 39 39 H 0.96999 * 119.99882 * 180.02562 * 15 14 12 40 40 H 1.08995 * 109.46935 * 325.71494 * 21 20 6 41 41 H 1.09003 * 109.46905 * 205.70996 * 21 20 6 42 42 H 1.09006 * 109.46997 * 60.00059 * 22 21 20 43 43 H 1.08999 * 109.47635 * 300.00280 * 22 21 20 44 44 H 0.96997 * 119.99880 * 244.99656 * 26 23 22 45 45 H 1.09003 * 109.47028 * 180.02562 * 27 26 23 46 46 H 1.09006 * 109.46797 * 299.99941 * 27 26 23 47 47 H 1.08994 * 109.47633 * 59.99450 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2871 2.1498 -1.0496 5 7 2.7054 3.3104 -0.6889 6 6 2.7345 3.3867 0.6207 7 7 3.1300 4.4809 1.3736 8 6 4.4590 4.9514 0.9605 9 6 2.1395 5.5625 1.2908 10 1 1.1610 5.1823 1.5843 11 6 2.0737 6.0851 -0.1456 12 6 2.5408 6.6829 2.2152 13 1 3.4418 6.6001 2.8049 14 6 1.7577 7.8140 2.3083 15 7 0.6608 7.9152 1.5898 16 14 2.2555 9.2031 3.4535 17 1 3.5882 9.7215 3.0529 18 1 1.2541 10.2965 3.3700 19 1 2.3204 8.6960 4.8478 20 7 2.3029 2.1847 1.1013 21 6 2.1641 1.7921 2.5059 22 6 0.7973 2.2398 3.0278 23 16 0.6256 1.7543 4.7672 24 8 0.5388 0.3407 4.8840 25 8 1.5145 2.5037 5.5841 26 7 -0.8796 2.2925 5.1998 27 6 -2.0716 1.7181 4.5710 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 4.4224 5.2766 -0.0791 34 1 4.7610 5.7869 1.5921 35 1 5.1795 4.1399 1.0624 36 1 3.0522 6.4654 -0.4390 37 1 1.7835 5.2747 -0.8142 38 1 1.3391 6.8880 -0.2069 39 1 0.1100 8.7110 1.6550 40 1 2.9503 2.2646 3.0946 41 1 2.2482 0.7086 2.5902 42 1 0.0110 1.7673 2.4390 43 1 0.7131 3.3232 2.9434 44 1 -0.9719 2.9879 5.8696 45 1 -2.9630 2.1943 4.9794 46 1 -2.0312 1.8859 3.4947 47 1 -2.1074 0.6472 4.7705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417487519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:41 Heat of formation + Delta-G solvation = 24.072419 kcal Electronic energy + Delta-G solvation = -30426.976532 eV Core-core repulsion = 26388.388696 eV Total energy + Delta-G solvation = -4038.587835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.63764 -37.34585 -37.26840 -36.15732 -35.79411 -35.20781 -33.85502 -32.76535 -30.92038 -29.20280 -28.31818 -26.22328 -25.57008 -25.27399 -24.53206 -23.96735 -21.57955 -20.34805 -19.70974 -19.41718 -18.06827 -17.25533 -16.57400 -16.36140 -16.23784 -15.90043 -15.43287 -15.27314 -14.81195 -14.68390 -14.35917 -14.05861 -13.95635 -13.70694 -13.30914 -13.11882 -13.06612 -12.49663 -12.29846 -12.27117 -12.17170 -12.01482 -11.88188 -11.80507 -11.59234 -11.41681 -11.29461 -11.24285 -11.02851 -10.94264 -10.82878 -10.63294 -10.26051 -10.18039 -10.02127 -9.93157 -9.72639 -8.98745 -8.56120 -8.49118 -7.77173 -6.13697 -4.20018 0.01661 2.04151 2.46443 2.57835 3.24085 3.26620 3.30929 3.34390 3.54058 3.99899 4.23278 4.28233 4.36189 4.39194 4.56717 4.73054 4.77958 4.79224 5.10423 5.13627 5.15318 5.18532 5.33812 5.41285 5.47927 5.52923 5.63228 5.67629 5.73896 5.95432 6.04088 6.14861 6.33572 6.36169 6.55868 6.70398 6.78120 6.92109 6.98474 7.08263 7.43888 7.56605 7.69698 7.83030 8.17808 8.38436 8.83572 9.16306 9.45374 10.92837 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008539 B = 0.005200 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.137208 B = 5383.579724 C = 7519.609209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.033 4.033 3 C 0.159 3.841 4 N -0.290 5.290 5 N -0.311 5.311 6 C 0.378 3.622 7 N -0.472 5.472 8 C 0.046 3.954 9 C 0.226 3.774 10 H 0.034 0.966 11 C -0.174 4.174 12 C -0.509 4.509 13 H 0.067 0.933 14 C 0.063 3.937 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.275 1.275 20 N -0.466 5.466 21 C 0.134 3.866 22 C -0.656 4.656 23 S 2.623 3.377 24 O -0.955 6.955 25 O -0.942 6.942 26 N -1.119 6.119 27 C 0.081 3.919 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.032 0.968 38 H 0.087 0.913 39 H 0.263 0.737 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.156 0.844 44 H 0.421 0.579 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 -15.418 4.119 16.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.073 4.073 3 C -0.108 4.108 4 N -0.129 5.129 5 N -0.154 5.154 6 C 0.023 3.977 7 N -0.198 5.198 8 C -0.102 4.102 9 C 0.121 3.879 10 H 0.051 0.949 11 C -0.233 4.233 12 C -0.548 4.548 13 H 0.085 0.915 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.200 1.200 20 N -0.160 5.160 21 C 0.009 3.991 22 C -0.785 4.785 23 S 2.711 3.289 24 O -0.945 6.945 25 O -0.932 6.932 26 N -0.879 5.879 27 C -0.066 4.066 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.134 0.866 41 H 0.120 0.880 42 H 0.153 0.847 43 H 0.174 0.826 44 H 0.256 0.744 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.540 -15.608 3.535 16.390 hybrid contribution -0.490 1.522 0.828 1.801 sum -4.031 -14.085 4.363 15.287 Atomic orbital electron populations 1.21794 0.93938 1.02341 1.02638 1.19936 0.96438 0.86662 1.04218 1.24670 1.05854 0.97471 0.82806 1.73969 1.15492 0.99351 1.24137 1.74786 1.20090 1.11854 1.08653 1.22981 0.98567 0.87758 0.88428 1.59460 1.05784 1.05688 1.48892 1.22241 0.87129 1.00038 1.00751 1.19393 0.88641 0.85769 0.94071 0.94855 1.22436 1.01660 1.01815 0.97380 1.20986 1.09742 1.00306 1.23720 0.91478 1.24904 0.94861 0.98290 0.95865 1.69896 1.14089 1.28860 1.39991 0.86521 0.78314 0.81228 0.81174 1.20106 1.21321 1.20018 1.46208 1.50729 1.12161 1.06944 1.21237 0.95556 1.01403 0.80941 1.31163 1.05471 1.15287 1.26530 1.04711 0.73107 0.74549 0.76503 1.93602 1.85719 1.29657 1.85522 1.93663 1.63009 1.72595 1.63964 1.55318 1.22665 1.55287 1.54653 1.21522 0.88172 0.99297 0.97571 0.92998 0.91600 0.91296 0.88336 0.90215 0.93812 0.89225 0.93705 0.94750 0.94922 0.89479 0.92723 0.86610 0.87986 0.84748 0.82606 0.74410 0.89756 0.92282 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 37.15 0.37 -1.01 16 2 C -0.03 -0.34 6.30 -27.89 -0.18 -0.52 16 3 C 0.16 2.50 7.32 -154.01 -1.13 1.37 16 4 N -0.29 -5.65 12.18 32.99 0.40 -5.25 16 5 N -0.31 -6.73 9.88 30.31 0.30 -6.43 16 6 C 0.38 7.64 6.20 -318.87 -1.98 5.67 16 7 N -0.47 -10.02 4.78 -176.08 -0.84 -10.86 16 8 C 0.05 0.90 8.70 60.07 0.52 1.43 16 9 C 0.23 5.50 2.31 -68.87 -0.16 5.34 16 10 H 0.03 0.89 7.91 -51.93 -0.41 0.48 16 11 C -0.17 -4.33 8.19 37.16 0.30 -4.03 16 12 C -0.51 -13.16 7.91 -34.44 -0.27 -13.43 16 13 H 0.07 1.71 6.75 -52.49 -0.35 1.35 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -24.34 11.32 55.43 0.63 -23.71 16 16 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 20 N -0.47 -7.63 2.81 -114.08 -0.32 -7.95 16 21 C 0.13 1.73 6.07 -4.04 -0.02 1.71 16 22 C -0.66 -7.74 6.35 37.16 0.24 -7.51 16 23 S 2.62 30.28 5.46 -107.50 -0.59 29.69 16 24 O -0.96 -12.35 17.73 -57.54 -1.02 -13.38 16 25 O -0.94 -14.52 18.08 -57.54 -1.04 -15.56 16 26 N -1.12 -10.41 6.08 -16.63 -0.10 -10.51 16 27 C 0.08 0.57 11.03 59.85 0.66 1.23 16 28 H 0.05 0.47 6.74 -51.93 -0.35 0.12 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.66 7.19 -51.93 -0.37 0.28 16 33 H 0.04 0.90 6.30 -51.93 -0.33 0.57 16 34 H 0.09 1.77 6.47 -51.93 -0.34 1.43 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.83 6.43 -51.93 -0.33 0.50 16 37 H 0.03 0.80 5.97 -51.93 -0.31 0.49 16 38 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.12 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.10 0.95 7.12 -51.93 -0.37 0.58 16 42 H 0.13 1.27 6.37 -51.92 -0.33 0.94 16 43 H 0.16 2.22 7.94 -51.92 -0.41 1.81 16 44 H 0.42 3.51 8.92 -34.47 -0.31 3.21 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.36 7.73 -51.93 -0.40 -0.04 16 47 H 0.07 0.45 8.04 -51.93 -0.42 0.04 16 LS Contribution 387.86 15.07 5.85 5.85 Total: -1.00 -35.38 387.86 -10.52 -45.90 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.02 Total: 4.89 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.74 Total: -8.18 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: 0.07 Total: -64.70 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -2.06 Total: -28.93 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 30.28 SS G_CDS: -0.59 Total: 29.69 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.38 -10.52 -45.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417487519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.969 kcal (2) G-P(sol) polarization free energy of solvation -35.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds