Wall clock time and date at job start Wed Apr 1 2020 03:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47506 * 2 1 4 4 N 1.30304 * 126.34315 * 270.16009 * 3 2 1 5 5 N 1.28533 * 110.04658 * 180.30896 * 4 3 2 6 6 C 1.31214 * 109.86231 * 359.71180 * 5 4 3 7 7 N 1.38586 * 126.47372 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99669 * 307.29972 * 7 6 5 9 9 C 1.46905 * 110.99752 * 71.24696 * 7 6 5 10 10 H 1.09000 * 109.46763 * 55.00462 * 9 7 6 11 11 C 1.52995 * 109.47221 * 295.00563 * 9 7 6 12 12 C 1.50693 * 109.46937 * 175.00135 * 9 7 6 13 13 H 1.08001 * 120.00517 * 0.02562 * 12 9 7 14 14 C 1.37884 * 120.00051 * 180.02562 * 12 9 7 15 15 N 1.31515 * 119.99707 * 359.97438 * 14 12 9 16 16 Si 1.86794 * 120.00351 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47077 * 59.99785 * 16 14 12 18 18 H 1.48498 * 109.47177 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.47119 * 300.00181 * 16 14 12 20 20 N 1.36451 * 107.05834 * 0.02562 * 6 5 4 21 21 C 1.46499 * 127.14126 * 179.97438 * 20 6 5 22 22 C 1.52998 * 109.47031 * 85.70863 * 21 20 6 23 23 S 1.81400 * 109.47193 * 180.02562 * 22 21 20 24 24 O 1.42108 * 110.54023 * 291.62732 * 23 22 21 25 25 O 1.42095 * 110.54441 * 68.37544 * 23 22 21 26 26 N 1.65598 * 104.45037 * 180.02562 * 23 22 21 27 27 C 1.46499 * 120.00146 * 65.00147 * 26 23 22 28 28 H 1.09005 * 109.46667 * 299.99863 * 1 2 3 29 29 H 1.08996 * 109.47008 * 59.99977 * 1 2 3 30 30 H 1.08998 * 109.46899 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47292 * 239.99716 * 2 1 3 32 32 H 1.09004 * 109.47798 * 120.00225 * 2 1 3 33 33 H 1.08998 * 109.47768 * 62.11526 * 8 7 6 34 34 H 1.09005 * 109.46794 * 182.11147 * 8 7 6 35 35 H 1.09000 * 109.46961 * 302.10530 * 8 7 6 36 36 H 1.09000 * 109.47170 * 299.99649 * 11 9 7 37 37 H 1.09000 * 109.47609 * 59.99518 * 11 9 7 38 38 H 1.09001 * 109.47351 * 180.02562 * 11 9 7 39 39 H 0.96999 * 119.99882 * 180.02562 * 15 14 12 40 40 H 1.08995 * 109.46935 * 325.71494 * 21 20 6 41 41 H 1.09003 * 109.46905 * 205.70996 * 21 20 6 42 42 H 1.09006 * 109.46997 * 60.00059 * 22 21 20 43 43 H 1.08999 * 109.47635 * 300.00280 * 22 21 20 44 44 H 0.96997 * 119.99880 * 244.99656 * 26 23 22 45 45 H 1.09003 * 109.47028 * 180.02562 * 27 26 23 46 46 H 1.09006 * 109.46797 * 299.99941 * 27 26 23 47 47 H 1.08994 * 109.47633 * 59.99450 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2871 2.1498 -1.0496 5 7 2.7054 3.3104 -0.6889 6 6 2.7345 3.3867 0.6207 7 7 3.1300 4.4809 1.3736 8 6 4.4590 4.9514 0.9605 9 6 2.1395 5.5625 1.2908 10 1 1.1610 5.1823 1.5843 11 6 2.0737 6.0851 -0.1456 12 6 2.5408 6.6829 2.2152 13 1 3.4418 6.6001 2.8049 14 6 1.7577 7.8140 2.3083 15 7 0.6608 7.9152 1.5898 16 14 2.2555 9.2031 3.4535 17 1 3.5882 9.7215 3.0529 18 1 1.2541 10.2965 3.3700 19 1 2.3204 8.6960 4.8478 20 7 2.3029 2.1847 1.1013 21 6 2.1641 1.7921 2.5059 22 6 0.7973 2.2398 3.0278 23 16 0.6256 1.7543 4.7672 24 8 0.5388 0.3407 4.8840 25 8 1.5145 2.5037 5.5841 26 7 -0.8796 2.2925 5.1998 27 6 -2.0716 1.7181 4.5710 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 4.4224 5.2766 -0.0791 34 1 4.7610 5.7869 1.5921 35 1 5.1795 4.1399 1.0624 36 1 3.0522 6.4654 -0.4390 37 1 1.7835 5.2747 -0.8142 38 1 1.3391 6.8880 -0.2069 39 1 0.1100 8.7110 1.6550 40 1 2.9503 2.2646 3.0946 41 1 2.2482 0.7086 2.5902 42 1 0.0110 1.7673 2.4390 43 1 0.7131 3.3232 2.9434 44 1 -0.9719 2.9879 5.8696 45 1 -2.9630 2.1943 4.9794 46 1 -2.0312 1.8859 3.4947 47 1 -2.1074 0.6472 4.7705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417487519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:40 Heat of formation + Delta-G solvation = -1.548046 kcal Electronic energy + Delta-G solvation = -30428.087518 eV Core-core repulsion = 26388.388696 eV Total energy + Delta-G solvation = -4039.698822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.03134 -39.06120 -38.29997 -37.20123 -36.97669 -35.92399 -35.12928 -34.39429 -32.10800 -30.95325 -29.81640 -27.30142 -27.12921 -26.84107 -25.71103 -24.94774 -23.26962 -21.52560 -21.17378 -20.44103 -19.07143 -18.47286 -18.10593 -17.67943 -17.46960 -17.18528 -16.85064 -16.50657 -16.20288 -15.81976 -15.42642 -15.34122 -14.97716 -14.87144 -14.63133 -14.27092 -14.16109 -13.82210 -13.43186 -13.36419 -13.32307 -13.21268 -13.11265 -13.09432 -12.95836 -12.73530 -12.69619 -12.59328 -12.53810 -12.36875 -12.18708 -12.08166 -12.04113 -11.99380 -11.49084 -11.25628 -10.94809 -10.54143 -10.50762 -10.01640 -9.47085 -8.15585 -6.28305 -0.92632 0.69637 1.26592 1.45703 1.46319 1.53923 1.66208 1.80054 2.41029 2.59252 3.00774 3.07292 3.15156 3.24988 3.34972 3.40788 3.86239 3.88542 4.10363 4.16148 4.19237 4.32081 4.39098 4.50880 4.59927 4.63631 4.66424 4.70045 4.77787 4.87341 4.92949 4.98929 4.99874 5.00338 5.06481 5.07876 5.16522 5.32346 5.40936 5.61126 5.63268 5.80035 5.97273 6.01553 6.18202 6.60047 6.80668 7.40631 7.73461 8.90725 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008539 B = 0.005200 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.137208 B = 5383.579724 C = 7519.609209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C 0.184 3.816 4 N -0.331 5.331 5 N -0.344 5.344 6 C 0.354 3.646 7 N -0.468 5.468 8 C 0.050 3.950 9 C 0.237 3.763 10 H 0.007 0.993 11 C -0.156 4.156 12 C -0.519 4.519 13 H 0.069 0.931 14 C 0.019 3.981 15 N -0.918 5.918 16 Si 0.961 3.039 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.269 1.269 20 N -0.461 5.461 21 C 0.117 3.883 22 C -0.652 4.652 23 S 2.650 3.350 24 O -0.963 6.963 25 O -0.984 6.984 26 N -1.117 6.117 27 C 0.067 3.933 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.029 0.971 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.031 0.969 37 H 0.028 0.972 38 H 0.062 0.938 39 H 0.263 0.737 40 H 0.110 0.890 41 H 0.146 0.854 42 H 0.159 0.841 43 H 0.129 0.871 44 H 0.426 0.574 45 H 0.103 0.897 46 H 0.069 0.931 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 -17.497 5.273 18.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 C -0.084 4.084 4 N -0.170 5.170 5 N -0.186 5.186 6 C -0.004 4.004 7 N -0.194 5.194 8 C -0.098 4.098 9 C 0.131 3.869 10 H 0.025 0.975 11 C -0.215 4.215 12 C -0.558 4.558 13 H 0.087 0.913 14 C -0.181 4.181 15 N -0.557 5.557 16 Si 0.786 3.214 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.194 1.194 20 N -0.154 5.154 21 C -0.007 4.007 22 C -0.779 4.779 23 S 2.738 3.262 24 O -0.953 6.953 25 O -0.974 6.974 26 N -0.879 5.879 27 C -0.078 4.078 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.048 0.952 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.128 0.872 41 H 0.164 0.836 42 H 0.177 0.823 43 H 0.147 0.853 44 H 0.261 0.739 45 H 0.122 0.878 46 H 0.087 0.913 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.979 -17.709 4.697 18.749 hybrid contribution -0.429 2.027 0.430 2.116 sum -4.408 -15.683 5.127 17.078 Atomic orbital electron populations 1.21823 0.92741 1.04272 1.01837 1.20344 0.97313 0.83301 1.06588 1.25741 1.02370 0.98701 0.81576 1.73894 1.17808 0.99404 1.25900 1.74643 1.20929 1.13355 1.09702 1.22867 1.00467 0.88634 0.88404 1.59322 1.05445 1.05212 1.49401 1.22228 0.87079 1.00809 0.99641 1.19056 0.88356 0.86431 0.93061 0.97550 1.22231 1.00533 1.00664 0.98066 1.21232 1.09760 1.00889 1.23878 0.91322 1.25658 0.94786 1.00494 0.97162 1.70023 1.15003 1.29433 1.41221 0.85565 0.78048 0.78379 0.79413 1.19526 1.21146 1.19427 1.46354 1.49683 1.10926 1.08471 1.21693 0.95979 1.04100 0.78914 1.31114 1.05877 1.13680 1.27275 1.03801 0.72927 0.73778 0.75686 1.93583 1.86047 1.30125 1.85568 1.93606 1.65011 1.73473 1.65322 1.55166 1.22551 1.55527 1.54695 1.21834 0.87811 0.99934 0.98257 0.92766 0.93530 0.87989 0.86956 0.86863 0.95243 0.89528 0.91378 0.94980 0.95362 0.91916 0.92771 0.87183 0.83601 0.82294 0.85305 0.73856 0.87826 0.91287 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.89 71.98 0.71 -1.52 16 2 C -0.04 -0.62 6.30 29.85 0.19 -0.44 16 3 C 0.18 5.49 7.32 137.64 1.01 6.50 16 4 N -0.33 -12.88 12.18 -49.53 -0.60 -13.48 16 5 N -0.34 -15.15 9.88 -58.00 -0.57 -15.72 16 6 C 0.35 14.42 6.20 260.11 1.61 16.03 16 7 N -0.47 -20.24 4.78 -711.00 -3.40 -23.64 16 8 C 0.05 1.99 8.70 127.69 1.11 3.10 16 9 C 0.24 11.91 2.31 44.16 0.10 12.02 16 10 H 0.01 0.37 7.91 -2.39 -0.02 0.35 16 11 C -0.16 -8.07 8.19 71.98 0.59 -7.48 16 12 C -0.52 -27.29 7.91 25.60 0.20 -27.09 16 13 H 0.07 3.52 6.75 -2.91 -0.02 3.50 16 14 C 0.02 0.98 5.30 84.66 0.45 1.43 16 15 N -0.92 -51.25 11.32 21.45 0.24 -51.00 16 16 Si 0.96 42.13 29.54 68.60 2.03 44.16 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 N -0.46 -14.59 2.81 -514.85 -1.45 -16.04 16 21 C 0.12 2.81 6.07 86.38 0.52 3.33 16 22 C -0.65 -14.55 6.35 71.98 0.46 -14.09 16 23 S 2.65 57.44 5.46 -56.49 -0.31 57.13 16 24 O -0.96 -22.49 17.73 -127.65 -2.26 -24.75 16 25 O -0.98 -29.98 18.08 -127.65 -2.31 -32.29 16 26 N -1.12 -19.07 6.08 -206.54 -1.25 -20.32 16 27 C 0.07 0.79 11.03 127.77 1.41 2.20 16 28 H 0.05 0.79 6.74 -2.38 -0.02 0.77 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.11 1.26 7.19 -2.39 -0.02 1.24 16 33 H 0.03 1.24 6.30 -2.39 -0.02 1.22 16 34 H 0.09 3.45 6.47 -2.38 -0.02 3.43 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.03 1.61 6.43 -2.39 -0.02 1.60 16 37 H 0.03 1.45 5.97 -2.39 -0.01 1.43 16 38 H 0.06 3.54 6.07 -2.39 -0.01 3.52 16 39 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.15 2.15 7.12 -2.39 -0.02 2.13 16 42 H 0.16 2.63 6.37 -2.39 -0.02 2.62 16 43 H 0.13 3.73 7.94 -2.39 -0.02 3.71 16 44 H 0.43 6.64 8.92 -96.75 -0.86 5.78 16 45 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.67 7.73 -2.38 -0.02 0.66 16 47 H 0.08 0.80 8.04 -2.39 -0.02 0.78 16 Total: -1.00 -78.51 387.86 -1.38 -79.89 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.14 Total: 22.07 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 8.37 Total: -6.01 kcal Atomic # 7 Polarization: -133.17 SS G_CDS: -7.03 Total: -140.20 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -4.57 Total: -57.04 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 57.44 SS G_CDS: -0.31 Total: 57.13 kcal Total: -78.51 -1.38 -79.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417487519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.347 kcal (2) G-P(sol) polarization free energy of solvation -78.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds