Wall clock time and date at job start Wed Apr 1 2020 04:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47038 * 2 1 4 4 N 1.46488 * 109.47282 * 300.00063 * 3 2 1 5 5 C 1.36937 * 120.00049 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99978 * 0.02562 * 5 4 3 7 7 C 1.38815 * 120.00094 * 179.97438 * 5 4 3 8 8 N 1.31619 * 120.00124 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00029 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47038 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46752 * 120.00079 * 9 7 5 12 12 H 1.48498 * 109.47294 * 240.00224 * 9 7 5 13 13 N 1.46501 * 109.46866 * 240.00282 * 2 1 3 14 14 C 1.34779 * 119.99608 * 173.96877 * 13 2 1 15 15 O 1.21677 * 120.00358 * 5.26792 * 14 13 2 16 16 C 1.46825 * 119.99938 * 185.27052 * 14 13 2 17 17 C 1.41298 * 126.50080 * 359.68875 * 16 14 13 18 18 N 1.30369 * 108.46445 * 179.81508 * 17 16 14 19 19 N 1.39987 * 109.30615 * 0.44522 * 18 17 16 20 20 C 1.35992 * 108.16477 * 359.71696 * 19 18 17 21 21 N 1.37182 * 120.55062 * 179.97438 * 20 19 18 22 22 H 0.96996 * 119.87558 * 179.97438 * 21 20 19 23 23 C 1.36351 * 120.24111 * 359.97438 * 21 20 19 24 24 C 1.35240 * 119.83139 * 0.02562 * 23 21 20 25 25 C 1.34852 * 131.92929 * 179.68730 * 19 18 17 26 26 O 1.21820 * 120.11617 * 0.02562 * 25 19 18 27 27 C 1.53004 * 109.47337 * 120.00220 * 2 1 3 28 28 C 1.52999 * 117.49714 * 54.45534 * 27 2 1 29 29 C 1.52991 * 117.49870 * 123.07679 * 27 2 1 30 30 H 1.08993 * 109.46838 * 299.99845 * 1 2 3 31 31 H 1.08996 * 109.46682 * 59.99609 * 1 2 3 32 32 H 1.09000 * 109.46869 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46803 * 60.00504 * 3 2 1 34 34 H 1.09003 * 109.46943 * 179.97438 * 3 2 1 35 35 H 0.96998 * 120.00421 * 359.97438 * 4 3 2 36 36 H 0.97001 * 120.00403 * 179.97438 * 8 7 5 37 37 H 0.96997 * 120.00636 * 353.96538 * 13 2 1 38 38 H 1.08002 * 125.76906 * 359.97438 * 17 16 14 39 39 H 1.08005 * 120.08038 * 179.97438 * 23 21 20 40 40 H 1.08000 * 120.15197 * 180.02562 * 24 23 21 41 41 H 1.08998 * 115.56040 * 268.76994 * 27 2 1 42 42 H 1.08998 * 117.49857 * 0.02562 * 28 27 2 43 43 H 1.09003 * 117.49935 * 214.98304 * 28 27 2 44 44 H 1.09003 * 117.49974 * 145.02032 * 29 27 2 45 45 H 1.08997 * 117.50493 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1961 5 6 1.8830 3.4440 -1.4130 6 1 2.5046 3.9686 -0.7025 7 6 1.4207 4.0982 -2.5467 8 7 0.6636 3.4588 -3.4128 9 14 1.8720 5.8867 -2.8422 10 1 2.7257 6.3723 -1.7284 11 1 2.6150 6.0046 -4.1226 12 1 0.6345 6.7047 -2.9109 13 7 2.0183 -0.6906 -1.1962 14 6 3.3373 -0.7085 -1.4727 15 8 4.1313 -0.2353 -0.6814 16 6 3.8162 -1.2992 -2.7287 17 6 3.0211 -1.8891 -3.7369 18 7 3.8050 -2.2947 -4.6964 19 7 5.1331 -2.0036 -4.3633 20 6 5.1411 -1.3896 -3.1498 21 7 6.3225 -0.9918 -2.5774 22 1 6.3168 -0.5544 -1.7117 23 6 7.5048 -1.2090 -3.2210 24 6 7.5116 -1.8185 -4.4282 25 6 6.2942 -2.2250 -5.0124 26 8 6.2916 -2.7747 -6.0995 27 6 2.0401 -0.7213 1.2492 28 6 1.5318 -2.1421 1.5016 29 6 2.9739 -1.9156 1.0436 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6767 1.9563 0.8901 34 1 3.1301 1.4425 0.0005 35 1 0.9944 1.6617 -1.8348 36 1 0.3402 3.9160 -4.2048 37 1 1.3924 -1.1349 -1.7893 38 1 1.9456 -1.9851 -3.7173 39 1 8.4335 -0.8943 -2.7681 40 1 8.4451 -1.9934 -4.9423 41 1 2.2168 -0.0881 2.1187 42 1 0.8343 -2.5632 0.7775 43 1 1.3740 -2.4438 2.5371 44 1 3.7650 -2.0683 1.7777 45 1 3.2252 -2.1874 0.0184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495283131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:11 Heat of formation + Delta-G solvation = 92.840778 kcal Electronic energy + Delta-G solvation = -31272.554985 eV Core-core repulsion = 27101.505218 eV Total energy + Delta-G solvation = -4171.049767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.81338 -40.30340 -38.96341 -38.13213 -37.02514 -34.98400 -33.45789 -32.94084 -31.71628 -31.37615 -29.85130 -29.12949 -26.05255 -24.61086 -24.39754 -23.63585 -22.61766 -22.10189 -21.37593 -20.74207 -19.25592 -18.96446 -18.26018 -17.54216 -17.26389 -16.89363 -16.78091 -15.99722 -15.79553 -15.39781 -14.52592 -14.43454 -14.05652 -13.96746 -13.82723 -13.62664 -13.58669 -13.42794 -13.26769 -13.19602 -12.85940 -12.16139 -12.08946 -11.91802 -11.32032 -11.19787 -11.08626 -10.89119 -10.80443 -10.77359 -10.61352 -10.22773 -10.18726 -10.06330 -9.87727 -9.68280 -9.65674 -9.37400 -8.79935 -8.64184 -8.15751 -6.83438 -5.74099 -3.00016 0.62089 0.84197 1.74965 2.07211 2.35299 3.10758 3.36081 3.43784 3.49768 3.51719 3.65941 3.91216 4.02955 4.26215 4.52185 4.57313 4.60306 4.85885 4.88064 5.06898 5.12630 5.16542 5.23386 5.35790 5.43801 5.56017 5.63318 5.71095 5.76954 5.88389 5.98108 6.03536 6.11308 6.16434 6.26931 6.29308 6.37043 6.51231 6.58593 6.63971 6.73780 6.88918 6.91727 7.12838 7.67002 7.74015 7.86793 8.45621 8.56993 9.57157 10.15734 10.50921 11.49095 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008300 B = 0.004491 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3372.738537 B = 6232.848239 C = 8277.172743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.203 3.797 3 C 0.142 3.858 4 N -0.726 5.726 5 C -0.229 4.229 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.934 5.934 9 Si 0.902 3.098 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.292 1.292 13 N -0.707 5.707 14 C 0.612 3.388 15 O -0.545 6.545 16 C -0.297 4.297 17 C 0.130 3.870 18 N -0.264 5.264 19 N -0.357 5.357 20 C 0.368 3.632 21 N -0.585 5.585 22 H 0.448 0.552 23 C 0.191 3.809 24 C -0.310 4.310 25 C 0.564 3.436 26 O -0.493 6.493 27 C -0.142 4.142 28 C -0.187 4.187 29 C -0.157 4.157 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.021 0.979 34 H 0.051 0.949 35 H 0.382 0.618 36 H 0.253 0.747 37 H 0.395 0.605 38 H 0.206 0.794 39 H 0.191 0.809 40 H 0.178 0.822 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.003 -14.156 7.590 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.117 3.883 3 C 0.014 3.986 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.584 5.584 9 Si 0.734 3.266 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.219 1.219 13 N -0.356 5.356 14 C 0.400 3.600 15 O -0.424 6.424 16 C -0.315 4.315 17 C -0.061 4.061 18 N -0.080 5.080 19 N -0.157 5.157 20 C 0.144 3.856 21 N -0.203 5.203 22 H 0.291 0.709 23 C 0.062 3.938 24 C -0.340 4.340 25 C 0.363 3.637 26 O -0.364 6.364 27 C -0.161 4.161 28 C -0.224 4.224 29 C -0.194 4.194 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.216 0.784 36 H 0.063 0.937 37 H 0.229 0.771 38 H 0.222 0.778 39 H 0.207 0.793 40 H 0.196 0.804 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.788 -14.573 6.261 18.638 hybrid contribution -0.322 1.419 0.302 1.486 sum 9.466 -13.154 6.563 17.484 Atomic orbital electron populations 1.21991 0.93050 1.01428 1.04144 1.20071 0.93714 0.92510 0.82016 1.21092 0.98847 0.87714 0.90957 1.42253 1.61259 1.10447 1.23080 1.19240 1.24988 0.87667 1.04200 0.91406 1.24666 1.00821 0.98039 0.97523 1.69643 1.39694 1.35898 1.13126 0.86181 0.77517 0.85399 0.77518 1.20671 1.22095 1.21940 1.45659 1.06824 1.56193 1.26946 1.16489 0.82672 0.77529 0.83332 1.90701 1.55000 1.47669 1.49029 1.19631 0.88779 1.20691 1.02428 1.24256 1.00583 0.92215 0.89003 1.77572 0.83718 1.24601 1.22138 1.48038 1.08268 1.44990 1.14449 1.18711 0.88084 0.92639 0.86157 1.41141 1.01686 1.54306 1.23120 0.70915 1.22433 0.89326 0.89937 0.92094 1.21639 0.98180 1.15022 0.99139 1.17135 0.81213 0.79786 0.85596 1.90906 1.85848 1.40136 1.19550 1.22521 1.04054 0.90213 0.99333 1.22976 0.97980 0.99862 1.01548 1.22887 0.92341 1.02133 1.02072 0.90985 0.90654 0.92804 0.96098 0.93083 0.78387 0.93733 0.77094 0.77781 0.79259 0.80439 0.87506 0.89146 0.89486 0.89794 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.20 37.16 0.30 -1.71 16 2 C 0.20 3.00 0.55 -131.81 -0.07 2.93 16 3 C 0.14 2.80 4.83 -4.05 -0.02 2.78 16 4 N -0.73 -17.50 5.17 -59.91 -0.31 -17.81 16 5 C -0.23 -6.34 9.99 -15.06 -0.15 -6.49 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 8 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 9 Si 0.90 22.53 29.55 -169.99 -5.02 17.50 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 N -0.71 -9.79 4.18 -48.85 -0.20 -10.00 16 14 C 0.61 9.25 5.05 -12.79 -0.06 9.19 16 15 O -0.54 -9.04 11.73 5.21 0.06 -8.98 16 16 C -0.30 -4.26 6.15 -104.86 -0.64 -4.90 16 17 C 0.13 1.75 11.48 -17.01 -0.20 1.55 16 18 N -0.26 -4.27 12.54 30.85 0.39 -3.89 16 19 N -0.36 -5.54 3.79 -13.82 -0.05 -5.59 16 20 C 0.37 5.04 7.78 -153.52 -1.20 3.84 16 21 N -0.58 -5.69 5.39 -11.73 -0.06 -5.76 16 22 H 0.45 3.97 7.78 -40.82 -0.32 3.65 16 23 C 0.19 1.26 11.25 -16.61 -0.19 1.07 16 24 C -0.31 -2.91 9.95 -39.60 -0.39 -3.30 16 25 C 0.56 8.46 7.70 -15.17 -0.12 8.34 16 26 O -0.49 -9.11 17.90 5.08 0.09 -9.02 16 27 C -0.14 -1.84 4.82 -90.62 -0.44 -2.28 16 28 C -0.19 -2.00 9.68 -26.73 -0.26 -2.26 16 29 C -0.16 -1.92 8.30 -26.74 -0.22 -2.14 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.20 6.86 -51.93 -0.36 0.84 16 32 H 0.05 0.59 6.96 -51.93 -0.36 0.22 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 1.11 5.92 -51.93 -0.31 0.80 16 35 H 0.38 9.48 6.35 -40.82 -0.26 9.22 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.40 4.58 7.43 -40.82 -0.30 4.28 16 38 H 0.21 1.94 7.49 -52.49 -0.39 1.54 16 39 H 0.19 0.22 8.06 -52.48 -0.42 -0.21 16 40 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.11 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.09 0.91 7.26 -51.93 -0.38 0.54 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 1.21 5.09 -51.93 -0.26 0.94 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -37.69 369.88 -8.01 -45.69 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -5.44 Total: 13.19 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -3.75 Total: 6.09 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: 0.48 Total: -70.06 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.15 Total: -18.00 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.69 -8.01 -45.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495283131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.534 kcal (2) G-P(sol) polarization free energy of solvation -37.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds