Wall clock time and date at job start Wed Apr 1 2020 04:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47038 * 2 1 4 4 N 1.46488 * 109.47282 * 300.00063 * 3 2 1 5 5 C 1.36937 * 120.00049 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99978 * 0.02562 * 5 4 3 7 7 C 1.38815 * 120.00094 * 179.97438 * 5 4 3 8 8 N 1.31619 * 120.00124 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00029 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47038 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46752 * 120.00079 * 9 7 5 12 12 H 1.48498 * 109.47294 * 240.00224 * 9 7 5 13 13 N 1.46501 * 109.46866 * 240.00282 * 2 1 3 14 14 C 1.34779 * 119.99608 * 173.96877 * 13 2 1 15 15 O 1.21677 * 120.00358 * 5.26792 * 14 13 2 16 16 C 1.46825 * 119.99938 * 185.27052 * 14 13 2 17 17 C 1.41298 * 126.50080 * 359.68875 * 16 14 13 18 18 N 1.30369 * 108.46445 * 179.81508 * 17 16 14 19 19 N 1.39987 * 109.30615 * 0.44522 * 18 17 16 20 20 C 1.35992 * 108.16477 * 359.71696 * 19 18 17 21 21 N 1.37182 * 120.55062 * 179.97438 * 20 19 18 22 22 H 0.96996 * 119.87558 * 179.97438 * 21 20 19 23 23 C 1.36351 * 120.24111 * 359.97438 * 21 20 19 24 24 C 1.35240 * 119.83139 * 0.02562 * 23 21 20 25 25 C 1.34852 * 131.92929 * 179.68730 * 19 18 17 26 26 O 1.21820 * 120.11617 * 0.02562 * 25 19 18 27 27 C 1.53004 * 109.47337 * 120.00220 * 2 1 3 28 28 C 1.52999 * 117.49714 * 54.45534 * 27 2 1 29 29 C 1.52991 * 117.49870 * 123.07679 * 27 2 1 30 30 H 1.08993 * 109.46838 * 299.99845 * 1 2 3 31 31 H 1.08996 * 109.46682 * 59.99609 * 1 2 3 32 32 H 1.09000 * 109.46869 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46803 * 60.00504 * 3 2 1 34 34 H 1.09003 * 109.46943 * 179.97438 * 3 2 1 35 35 H 0.96998 * 120.00421 * 359.97438 * 4 3 2 36 36 H 0.97001 * 120.00403 * 179.97438 * 8 7 5 37 37 H 0.96997 * 120.00636 * 353.96538 * 13 2 1 38 38 H 1.08002 * 125.76906 * 359.97438 * 17 16 14 39 39 H 1.08005 * 120.08038 * 179.97438 * 23 21 20 40 40 H 1.08000 * 120.15197 * 180.02562 * 24 23 21 41 41 H 1.08998 * 115.56040 * 268.76994 * 27 2 1 42 42 H 1.08998 * 117.49857 * 0.02562 * 28 27 2 43 43 H 1.09003 * 117.49935 * 214.98304 * 28 27 2 44 44 H 1.09003 * 117.49974 * 145.02032 * 29 27 2 45 45 H 1.08997 * 117.50493 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1961 5 6 1.8830 3.4440 -1.4130 6 1 2.5046 3.9686 -0.7025 7 6 1.4207 4.0982 -2.5467 8 7 0.6636 3.4588 -3.4128 9 14 1.8720 5.8867 -2.8422 10 1 2.7257 6.3723 -1.7284 11 1 2.6150 6.0046 -4.1226 12 1 0.6345 6.7047 -2.9109 13 7 2.0183 -0.6906 -1.1962 14 6 3.3373 -0.7085 -1.4727 15 8 4.1313 -0.2353 -0.6814 16 6 3.8162 -1.2992 -2.7287 17 6 3.0211 -1.8891 -3.7369 18 7 3.8050 -2.2947 -4.6964 19 7 5.1331 -2.0036 -4.3633 20 6 5.1411 -1.3896 -3.1498 21 7 6.3225 -0.9918 -2.5774 22 1 6.3168 -0.5544 -1.7117 23 6 7.5048 -1.2090 -3.2210 24 6 7.5116 -1.8185 -4.4282 25 6 6.2942 -2.2250 -5.0124 26 8 6.2916 -2.7747 -6.0995 27 6 2.0401 -0.7213 1.2492 28 6 1.5318 -2.1421 1.5016 29 6 2.9739 -1.9156 1.0436 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6767 1.9563 0.8901 34 1 3.1301 1.4425 0.0005 35 1 0.9944 1.6617 -1.8348 36 1 0.3402 3.9160 -4.2048 37 1 1.3924 -1.1349 -1.7893 38 1 1.9456 -1.9851 -3.7173 39 1 8.4335 -0.8943 -2.7681 40 1 8.4451 -1.9934 -4.9423 41 1 2.2168 -0.0881 2.1187 42 1 0.8343 -2.5632 0.7775 43 1 1.3740 -2.4438 2.5371 44 1 3.7650 -2.0683 1.7777 45 1 3.2252 -2.1874 0.0184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495283131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:10 Heat of formation + Delta-G solvation = 64.943582 kcal Electronic energy + Delta-G solvation = -31273.764698 eV Core-core repulsion = 27101.505218 eV Total energy + Delta-G solvation = -4172.259480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.84529 -41.45824 -40.03918 -39.08794 -38.17790 -36.52100 -34.88690 -34.11134 -33.08654 -32.49799 -31.35496 -30.25032 -27.59286 -25.72930 -25.52004 -25.12780 -23.66208 -23.00991 -22.83082 -21.81453 -20.36630 -20.04055 -19.25015 -19.14740 -18.44447 -17.97973 -17.87626 -17.11027 -16.90446 -16.83200 -16.23994 -15.62857 -15.31576 -15.11198 -15.05158 -14.84469 -14.67764 -14.44735 -14.43760 -14.27794 -14.19292 -13.50063 -13.40644 -13.22045 -12.95424 -12.82608 -12.34432 -12.27984 -12.19648 -12.04434 -11.92036 -11.75036 -11.72191 -11.22048 -11.18759 -11.01690 -10.89916 -10.68230 -10.41878 -9.85122 -9.14219 -8.86400 -7.91529 -5.15703 -0.23709 -0.15054 0.75559 1.01298 1.45098 1.46006 1.48794 1.55132 2.11509 2.24471 2.52804 2.57318 3.02225 3.10582 3.38438 3.43319 3.67669 3.75090 3.77001 3.92603 4.06861 4.09961 4.24067 4.27245 4.44702 4.45447 4.48596 4.54785 4.66046 4.90452 4.96595 4.99837 5.01522 5.05538 5.18234 5.21659 5.30717 5.39789 5.41302 5.45393 5.52863 5.68368 5.77952 5.82220 5.87713 6.31595 6.61185 6.75340 7.39346 7.42620 8.17442 8.43506 9.31608 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008300 B = 0.004491 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3372.738537 B = 6232.848239 C = 8277.172743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.212 3.788 3 C 0.142 3.858 4 N -0.729 5.729 5 C -0.232 4.232 6 H 0.066 0.934 7 C -0.071 4.071 8 N -0.964 5.964 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.299 1.299 12 H -0.293 1.293 13 N -0.702 5.702 14 C 0.611 3.389 15 O -0.563 6.563 16 C -0.319 4.319 17 C 0.140 3.860 18 N -0.312 5.312 19 N -0.368 5.368 20 C 0.366 3.634 21 N -0.575 5.575 22 H 0.455 0.545 23 C 0.226 3.774 24 C -0.325 4.325 25 C 0.542 3.458 26 O -0.551 6.551 27 C -0.156 4.156 28 C -0.160 4.160 29 C -0.161 4.161 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.017 0.983 34 H 0.034 0.966 35 H 0.377 0.623 36 H 0.248 0.752 37 H 0.406 0.594 38 H 0.236 0.764 39 H 0.259 0.741 40 H 0.206 0.794 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.125 -14.357 9.696 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.126 3.874 3 C 0.015 3.985 4 N -0.373 5.373 5 C -0.365 4.365 6 H 0.084 0.916 7 C -0.263 4.263 8 N -0.615 5.615 9 Si 0.791 3.209 10 H -0.194 1.194 11 H -0.227 1.227 12 H -0.220 1.220 13 N -0.352 5.352 14 C 0.400 3.600 15 O -0.444 6.444 16 C -0.337 4.337 17 C -0.049 4.049 18 N -0.129 5.129 19 N -0.168 5.168 20 C 0.141 3.859 21 N -0.193 5.193 22 H 0.299 0.701 23 C 0.097 3.903 24 C -0.353 4.353 25 C 0.345 3.655 26 O -0.427 6.427 27 C -0.176 4.176 28 C -0.197 4.197 29 C -0.198 4.198 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.035 0.965 34 H 0.051 0.949 35 H 0.211 0.789 36 H 0.057 0.943 37 H 0.242 0.758 38 H 0.252 0.748 39 H 0.275 0.725 40 H 0.223 0.777 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.919 -14.775 8.428 20.213 hybrid contribution -0.598 1.503 -0.221 1.632 sum 10.322 -13.272 8.206 18.709 Atomic orbital electron populations 1.21933 0.91922 1.03209 1.02872 1.19863 0.94380 0.89807 0.83366 1.21158 0.97696 0.90710 0.88911 1.42350 1.61031 1.09654 1.24241 1.19550 1.23964 0.89165 1.03795 0.91645 1.25346 1.01578 1.01634 0.97748 1.69775 1.41105 1.37145 1.13481 0.85250 0.77139 0.81293 0.77200 1.19407 1.22682 1.21976 1.45588 1.06777 1.55861 1.26981 1.16586 0.82856 0.77220 0.83324 1.90676 1.55493 1.48610 1.49623 1.19668 0.89439 1.22054 1.02583 1.24782 1.01789 0.90484 0.87888 1.77511 0.84717 1.26772 1.23929 1.48222 1.08329 1.45177 1.15092 1.18988 0.89402 0.91894 0.85619 1.41463 1.01491 1.53064 1.23264 0.70084 1.23452 0.89944 0.86418 0.90483 1.21903 0.96695 1.16194 1.00484 1.18265 0.82320 0.79461 0.85440 1.90862 1.86426 1.43476 1.21965 1.22379 1.05910 0.91139 0.98189 1.23062 0.96828 0.96931 1.02845 1.22867 0.93461 1.01644 1.01826 0.90869 0.93248 0.89476 0.96488 0.94852 0.78939 0.94307 0.75800 0.74810 0.72515 0.77691 0.87901 0.88012 0.87707 0.89445 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.20 71.98 0.59 -3.05 16 2 C 0.21 6.05 0.55 3.61 0.00 6.05 16 3 C 0.14 5.61 4.83 86.38 0.42 6.02 16 4 N -0.73 -35.37 5.17 -343.46 -1.78 -37.15 16 5 C -0.23 -12.87 9.99 84.03 0.84 -12.03 16 6 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 7 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 8 N -0.96 -57.86 13.06 21.65 0.28 -57.57 16 9 Si 0.96 46.44 29.55 68.60 2.03 48.47 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 13 N -0.70 -18.82 4.18 -426.68 -1.78 -20.60 16 14 C 0.61 18.14 5.05 86.49 0.44 18.58 16 15 O -0.56 -18.31 11.73 -4.28 -0.05 -18.36 16 16 C -0.32 -9.09 6.15 -20.02 -0.12 -9.22 16 17 C 0.14 3.81 11.48 85.66 0.98 4.80 16 18 N -0.31 -10.51 12.54 -56.31 -0.71 -11.22 16 19 N -0.37 -11.69 3.79 -315.77 -1.20 -12.89 16 20 C 0.37 9.87 7.78 132.61 1.03 10.90 16 21 N -0.58 -9.92 5.39 -191.03 -1.03 -10.95 16 22 H 0.45 6.92 7.78 -92.71 -0.72 6.20 16 23 C 0.23 2.13 11.25 83.30 0.94 3.07 16 24 C -0.32 -5.49 9.95 22.26 0.22 -5.26 16 25 C 0.54 16.64 7.70 84.91 0.65 17.29 16 26 O -0.55 -21.54 17.90 -4.73 -0.08 -21.63 16 27 C -0.16 -3.78 4.82 -10.80 -0.05 -3.84 16 28 C -0.16 -2.91 9.68 30.59 0.30 -2.61 16 29 C -0.16 -3.60 8.30 30.59 0.25 -3.34 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.54 6.86 -2.39 -0.02 1.52 16 32 H 0.09 1.64 6.96 -2.39 -0.02 1.62 16 33 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.03 1.46 5.92 -2.39 -0.01 1.44 16 35 H 0.38 18.93 6.35 -92.71 -0.59 18.34 16 36 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.41 8.95 7.43 -92.71 -0.69 8.26 16 38 H 0.24 4.35 7.49 -2.91 -0.02 4.33 16 39 H 0.26 -1.13 8.06 -2.91 -0.02 -1.15 16 40 H 0.21 2.21 8.06 -2.91 -0.02 2.18 16 41 H 0.10 2.57 8.07 -2.39 -0.02 2.55 16 42 H 0.10 1.65 7.26 -2.39 -0.02 1.63 16 43 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 2.05 5.09 -2.39 -0.01 2.04 16 Total: -1.00 -86.43 369.88 1.73 -84.71 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.91 Total: 33.39 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 6.95 Total: 23.80 kcal Atomic # 7 Polarization: -144.18 SS G_CDS: -6.21 Total: -150.38 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.13 Total: -39.99 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -86.43 1.73 -84.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495283131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.653 kcal (2) G-P(sol) polarization free energy of solvation -86.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds