Wall clock time and date at job start Wed Apr 1 2020 02:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99745 * 2 1 4 4 C 1.53008 * 109.46817 * 184.69895 * 3 2 1 5 5 N 1.46900 * 109.46877 * 67.09112 * 4 3 2 6 6 C 1.46890 * 111.00241 * 286.36800 * 5 4 3 7 7 C 1.50705 * 109.47457 * 301.41884 * 6 5 4 8 8 H 1.07999 * 119.99569 * 4.66436 * 7 6 5 9 9 C 1.37868 * 120.00379 * 184.67218 * 7 6 5 10 10 N 1.31517 * 120.00159 * 5.11226 * 9 7 6 11 11 Si 1.86806 * 120.00167 * 185.11221 * 9 7 6 12 12 H 1.48500 * 109.46521 * 94.99411 * 11 9 7 13 13 H 1.48496 * 109.47259 * 214.98976 * 11 9 7 14 14 H 1.48499 * 109.47054 * 334.99559 * 11 9 7 15 15 C 1.38588 * 110.99627 * 162.41269 * 5 4 3 16 16 N 1.31222 * 126.47141 * 22.98972 * 15 5 4 17 17 N 1.28523 * 109.85595 * 180.25185 * 16 15 5 18 18 C 1.30290 * 110.05387 * 359.75120 * 17 16 15 19 19 C 1.50707 * 126.34487 * 180.02562 * 18 17 16 20 20 N 1.36449 * 126.47310 * 202.81367 * 15 5 4 21 21 C 1.46497 * 127.13406 * 0.02562 * 20 15 5 22 22 C 1.50706 * 109.46971 * 94.32183 * 21 20 15 23 23 C 1.35046 * 125.61750 * 85.91231 * 22 21 20 24 24 C 1.40479 * 107.10973 * 180.13483 * 23 22 21 25 25 C 1.36544 * 106.70596 * 359.63086 * 24 23 22 26 26 C 1.43198 * 125.98827 * 180.26094 * 25 24 23 27 27 N 7.70779 * 90.57765 * 315.80739 * 2 1 3 28 28 O 1.34049 * 125.61360 * 265.63398 * 22 21 20 29 29 H 1.09005 * 109.46542 * 64.93359 * 1 2 3 30 30 H 1.08999 * 109.47167 * 184.92809 * 1 2 3 31 31 H 1.08998 * 109.47461 * 304.93795 * 1 2 3 32 32 H 1.08998 * 109.47466 * 64.70306 * 3 2 1 33 33 H 1.08996 * 109.47242 * 304.69854 * 3 2 1 34 34 H 1.08997 * 109.46867 * 307.09072 * 4 3 2 35 35 H 1.09000 * 109.46844 * 187.09555 * 4 3 2 36 36 H 1.08999 * 109.47350 * 61.41746 * 6 5 4 37 37 H 1.08999 * 109.47278 * 181.41790 * 6 5 4 38 38 H 0.96997 * 120.00109 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.46885 * 269.95341 * 19 18 17 40 40 H 1.08995 * 109.47013 * 29.94991 * 19 18 17 41 41 H 1.08998 * 109.47087 * 149.95547 * 19 18 17 42 42 H 1.09000 * 109.47410 * 334.32213 * 21 20 15 43 43 H 1.08997 * 109.47457 * 214.31753 * 21 20 15 44 44 H 1.08002 * 126.44597 * 0.02562 * 23 22 21 45 45 H 1.08003 * 126.64524 * 179.89791 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5311 1.1866 -0.1182 5 7 3.8791 0.6539 -1.4422 6 6 3.5702 -0.7794 -1.5308 7 6 4.3306 -1.5242 -0.4639 8 1 4.9192 -0.9795 0.2595 9 6 4.2750 -2.9007 -0.4113 10 7 3.6418 -3.5696 -1.3501 11 14 5.0991 -3.8159 0.9933 12 1 4.1016 -4.0885 2.0591 13 1 5.6506 -5.1001 0.4913 14 1 6.2001 -2.9866 1.5460 15 6 5.2112 0.8942 -1.7397 16 7 6.1761 1.1115 -0.8773 17 7 7.2839 1.3017 -1.5005 18 6 7.0942 1.2126 -2.7864 19 6 8.1426 1.3725 -3.8572 20 7 5.7677 0.9463 -2.9844 21 6 5.0845 0.7616 -4.2671 22 6 4.6791 2.1045 -4.8181 23 6 5.4584 2.9158 -5.5652 24 6 4.6986 4.0593 -5.8630 25 6 3.4761 3.8806 -5.2816 26 6 2.3781 4.7984 -5.3323 27 7 1.5067 5.5262 -5.3726 28 8 3.4837 2.6879 -4.6518 29 1 -0.3632 0.4354 -0.9309 30 1 -0.3633 -1.0238 0.0883 31 1 -0.3634 0.5885 0.8424 32 1 1.7568 1.8161 0.9291 33 1 1.6236 1.8753 -0.8449 34 1 3.9039 0.5136 0.6538 35 1 3.9833 2.1703 0.0081 36 1 2.5004 -0.9301 -1.3867 37 1 3.8608 -1.1537 -2.5124 38 1 3.6030 -4.5381 -1.3133 39 1 8.1991 2.4190 -4.1569 40 1 9.1097 1.0530 -3.4692 41 1 7.8771 0.7613 -4.7198 42 1 4.1970 0.1460 -4.1207 43 1 5.7568 0.2688 -4.9693 44 1 6.4752 2.7228 -5.8740 45 1 5.0180 4.9123 -6.4434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001555555705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:39 Heat of formation + Delta-G solvation = 109.483914 kcal Electronic energy + Delta-G solvation = -31139.845601 eV Core-core repulsion = 26969.517535 eV Total energy + Delta-G solvation = -4170.328066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.10860 -42.31579 -37.95302 -36.94949 -36.15754 -35.25366 -33.46639 -32.54343 -31.54565 -30.85982 -29.26696 -27.62847 -26.94289 -26.11648 -25.48403 -22.98177 -22.67658 -22.30095 -21.74700 -20.24864 -19.75820 -19.60410 -17.23841 -16.82886 -16.45360 -16.29543 -15.96971 -15.67037 -15.09507 -14.93580 -14.52737 -14.47818 -14.24127 -14.07559 -13.69204 -13.63365 -13.55750 -13.38523 -13.23172 -12.83580 -12.73610 -12.63175 -12.46794 -12.15024 -11.81626 -11.65568 -11.23060 -11.09424 -10.99581 -10.93740 -10.72248 -10.38486 -10.37720 -10.04141 -9.99847 -9.77997 -9.57555 -9.06462 -8.92737 -8.60478 -8.35310 -7.47510 -6.02607 -4.04862 0.61781 1.62442 1.87155 2.29957 2.66853 2.86864 2.99261 3.33737 3.40084 3.47455 3.51393 3.71238 4.34479 4.35343 4.47412 4.48328 4.55437 4.70561 4.71520 5.08377 5.18723 5.23055 5.33452 5.39815 5.43054 5.52117 5.53076 5.67572 5.72741 5.77582 5.82511 5.87824 5.94283 5.97061 6.03038 6.11302 6.26480 6.50199 6.64835 6.73117 6.97135 6.98094 7.25342 7.55981 7.58521 7.75197 7.94593 8.15818 8.22674 9.00621 9.39558 9.60082 11.05308 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.004376 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.710619 B = 6396.506272 C = 8108.581493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.070 3.930 4 C 0.074 3.926 5 N -0.468 5.468 6 C 0.188 3.812 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.070 3.930 10 N -0.895 5.895 11 Si 0.887 3.113 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.272 1.272 15 C 0.414 3.586 16 N -0.325 5.325 17 N -0.285 5.285 18 C 0.153 3.847 19 C -0.058 4.058 20 N -0.479 5.479 21 C 0.190 3.810 22 C 0.021 3.979 23 C -0.195 4.195 24 C -0.120 4.120 25 C 0.039 3.961 26 C 0.293 3.707 27 N -0.381 5.381 28 O -0.136 6.136 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.030 0.970 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.025 0.975 38 H 0.260 0.740 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.164 0.836 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 11.736 -10.949 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C -0.007 4.007 4 C -0.054 4.054 5 N -0.193 5.193 6 C 0.065 3.935 7 C -0.575 4.575 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.534 5.534 11 Si 0.715 3.285 12 H -0.206 1.206 13 H -0.215 1.215 14 H -0.197 1.197 15 C 0.058 3.942 16 N -0.168 5.168 17 N -0.124 5.124 18 C -0.114 4.114 19 C -0.117 4.117 20 N -0.176 5.176 21 C 0.066 3.934 22 C -0.034 4.034 23 C -0.215 4.215 24 C -0.143 4.143 25 C -0.014 4.014 26 C -0.022 4.022 27 N -0.059 5.059 28 O -0.028 6.028 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.182 0.818 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.749 12.761 -9.877 16.154 hybrid contribution 0.239 -1.308 0.012 1.330 sum 0.988 11.452 -9.865 15.147 Atomic orbital electron populations 1.22659 0.82954 1.02196 0.98804 1.88288 1.17879 1.26444 1.94812 1.22488 0.93793 0.85463 0.98990 1.21974 0.93191 1.00011 0.90194 1.59545 1.08333 1.21707 1.29667 1.20243 0.99765 0.76541 0.96944 1.21665 1.29360 0.91977 1.14481 0.91476 1.24807 0.95202 0.97473 0.95739 1.69933 1.43395 1.07335 1.32742 0.86641 0.79820 0.79164 0.82879 1.20631 1.21458 1.19706 1.22711 0.92504 0.98130 0.80845 1.74698 0.94455 1.23174 1.24454 1.73868 1.19238 1.17725 1.01619 1.24504 0.83605 1.07056 0.96217 1.20113 0.95285 1.02637 0.93702 1.46004 1.08639 1.56574 1.06379 1.20118 1.00222 0.89342 0.83720 1.22922 0.83258 0.97159 1.00015 1.21640 1.01892 0.94316 1.03628 1.21890 0.91153 1.00204 1.01048 1.16531 0.92499 0.86778 1.05618 1.23555 0.91488 0.92900 0.94272 1.81333 1.07141 1.09557 1.07887 1.84174 1.34091 1.26515 1.58058 0.94838 0.90049 0.95102 0.93463 0.93553 0.90057 0.90751 0.90555 0.95710 0.93042 0.90298 0.89103 0.90920 0.85686 0.85411 0.81836 0.81797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.58 16 2 O -0.36 -6.94 7.78 -35.23 -0.27 -7.21 16 3 C 0.07 1.20 6.23 37.16 0.23 1.43 16 4 C 0.07 1.45 4.85 -3.82 -0.02 1.43 16 5 N -0.47 -9.68 4.67 -175.88 -0.82 -10.50 16 6 C 0.19 4.54 4.63 -4.98 -0.02 4.51 16 7 C -0.54 -14.54 7.68 -34.44 -0.26 -14.80 16 8 H 0.07 1.91 6.17 -52.49 -0.32 1.59 16 9 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 10 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 11 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.41 8.52 5.99 -318.86 -1.91 6.61 16 16 N -0.33 -7.30 11.23 30.32 0.34 -6.96 16 17 N -0.29 -5.82 12.18 32.99 0.40 -5.42 16 18 C 0.15 2.46 8.07 -154.02 -1.24 1.21 16 19 C -0.06 -0.56 10.26 36.01 0.37 -0.19 16 20 N -0.48 -7.94 2.79 -115.37 -0.32 -8.26 16 21 C 0.19 2.35 6.51 -5.19 -0.03 2.31 16 22 C 0.02 0.23 6.90 -35.44 -0.24 -0.01 16 23 C -0.19 -1.60 10.77 -39.87 -0.43 -2.03 16 24 C -0.12 -0.97 10.84 -39.35 -0.43 -1.39 16 25 C 0.04 0.42 7.08 -38.27 -0.27 0.15 16 26 C 0.29 3.40 15.88 -22.47 -0.36 3.04 16 27 N -0.38 -5.00 18.54 41.84 0.78 -4.23 16 28 O -0.14 -1.74 10.67 4.77 0.05 -1.69 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.83 5.96 -51.93 -0.31 1.52 16 35 H 0.07 1.37 7.83 -51.93 -0.41 0.96 16 36 H 0.08 1.96 5.50 -51.93 -0.29 1.67 16 37 H 0.02 0.63 6.98 -51.93 -0.36 0.27 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.51 7.37 -51.93 -0.38 0.13 16 42 H 0.13 1.76 6.92 -51.93 -0.36 1.40 16 43 H 0.13 1.09 7.40 -51.93 -0.38 0.71 16 44 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 389.70 15.07 5.87 5.87 Total: -1.00 -34.69 389.70 -7.62 -42.31 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.75 Total: -1.85 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -3.61 Total: 5.69 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 1.11 Total: -60.18 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.22 Total: -8.90 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.69 -7.62 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555555705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.798 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds