Wall clock time and date at job start Wed Apr 1 2020 02:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99745 * 2 1 4 4 C 1.53008 * 109.46817 * 184.69895 * 3 2 1 5 5 N 1.46900 * 109.46877 * 67.09112 * 4 3 2 6 6 C 1.46890 * 111.00241 * 286.36800 * 5 4 3 7 7 C 1.50705 * 109.47457 * 301.41884 * 6 5 4 8 8 H 1.07999 * 119.99569 * 4.66436 * 7 6 5 9 9 C 1.37868 * 120.00379 * 184.67218 * 7 6 5 10 10 N 1.31517 * 120.00159 * 5.11226 * 9 7 6 11 11 Si 1.86806 * 120.00167 * 185.11221 * 9 7 6 12 12 H 1.48500 * 109.46521 * 94.99411 * 11 9 7 13 13 H 1.48496 * 109.47259 * 214.98976 * 11 9 7 14 14 H 1.48499 * 109.47054 * 334.99559 * 11 9 7 15 15 C 1.38588 * 110.99627 * 162.41269 * 5 4 3 16 16 N 1.31222 * 126.47141 * 22.98972 * 15 5 4 17 17 N 1.28523 * 109.85595 * 180.25185 * 16 15 5 18 18 C 1.30290 * 110.05387 * 359.75120 * 17 16 15 19 19 C 1.50707 * 126.34487 * 180.02562 * 18 17 16 20 20 N 1.36449 * 126.47310 * 202.81367 * 15 5 4 21 21 C 1.46497 * 127.13406 * 0.02562 * 20 15 5 22 22 C 1.50706 * 109.46971 * 94.32183 * 21 20 15 23 23 C 1.35046 * 125.61750 * 85.91231 * 22 21 20 24 24 C 1.40479 * 107.10973 * 180.13483 * 23 22 21 25 25 C 1.36544 * 106.70596 * 359.63086 * 24 23 22 26 26 C 1.43198 * 125.98827 * 180.26094 * 25 24 23 27 27 N 7.70779 * 90.57765 * 315.80739 * 2 1 3 28 28 O 1.34049 * 125.61360 * 265.63398 * 22 21 20 29 29 H 1.09005 * 109.46542 * 64.93359 * 1 2 3 30 30 H 1.08999 * 109.47167 * 184.92809 * 1 2 3 31 31 H 1.08998 * 109.47461 * 304.93795 * 1 2 3 32 32 H 1.08998 * 109.47466 * 64.70306 * 3 2 1 33 33 H 1.08996 * 109.47242 * 304.69854 * 3 2 1 34 34 H 1.08997 * 109.46867 * 307.09072 * 4 3 2 35 35 H 1.09000 * 109.46844 * 187.09555 * 4 3 2 36 36 H 1.08999 * 109.47350 * 61.41746 * 6 5 4 37 37 H 1.08999 * 109.47278 * 181.41790 * 6 5 4 38 38 H 0.96997 * 120.00109 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.46885 * 269.95341 * 19 18 17 40 40 H 1.08995 * 109.47013 * 29.94991 * 19 18 17 41 41 H 1.08998 * 109.47087 * 149.95547 * 19 18 17 42 42 H 1.09000 * 109.47410 * 334.32213 * 21 20 15 43 43 H 1.08997 * 109.47457 * 214.31753 * 21 20 15 44 44 H 1.08002 * 126.44597 * 0.02562 * 23 22 21 45 45 H 1.08003 * 126.64524 * 179.89791 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5311 1.1866 -0.1182 5 7 3.8791 0.6539 -1.4422 6 6 3.5702 -0.7794 -1.5308 7 6 4.3306 -1.5242 -0.4639 8 1 4.9192 -0.9795 0.2595 9 6 4.2750 -2.9007 -0.4113 10 7 3.6418 -3.5696 -1.3501 11 14 5.0991 -3.8159 0.9933 12 1 4.1016 -4.0885 2.0591 13 1 5.6506 -5.1001 0.4913 14 1 6.2001 -2.9866 1.5460 15 6 5.2112 0.8942 -1.7397 16 7 6.1761 1.1115 -0.8773 17 7 7.2839 1.3017 -1.5005 18 6 7.0942 1.2126 -2.7864 19 6 8.1426 1.3725 -3.8572 20 7 5.7677 0.9463 -2.9844 21 6 5.0845 0.7616 -4.2671 22 6 4.6791 2.1045 -4.8181 23 6 5.4584 2.9158 -5.5652 24 6 4.6986 4.0593 -5.8630 25 6 3.4761 3.8806 -5.2816 26 6 2.3781 4.7984 -5.3323 27 7 1.5067 5.5262 -5.3726 28 8 3.4837 2.6879 -4.6518 29 1 -0.3632 0.4354 -0.9309 30 1 -0.3633 -1.0238 0.0883 31 1 -0.3634 0.5885 0.8424 32 1 1.7568 1.8161 0.9291 33 1 1.6236 1.8753 -0.8449 34 1 3.9039 0.5136 0.6538 35 1 3.9833 2.1703 0.0081 36 1 2.5004 -0.9301 -1.3867 37 1 3.8608 -1.1537 -2.5124 38 1 3.6030 -4.5381 -1.3133 39 1 8.1991 2.4190 -4.1569 40 1 9.1097 1.0530 -3.4692 41 1 7.8771 0.7613 -4.7198 42 1 4.1970 0.1460 -4.1207 43 1 5.7568 0.2688 -4.9693 44 1 6.4752 2.7228 -5.8740 45 1 5.0180 4.9123 -6.4434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001555555705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:38 Heat of formation + Delta-G solvation = 87.864059 kcal Electronic energy + Delta-G solvation = -31140.783108 eV Core-core repulsion = 26969.517535 eV Total energy + Delta-G solvation = -4171.265573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.01289 -43.57647 -39.47086 -37.88104 -37.68548 -36.42634 -34.61619 -34.22373 -32.69205 -31.84393 -30.76438 -29.14045 -27.99399 -27.53677 -26.97676 -24.65932 -23.64017 -23.55157 -22.80429 -21.43558 -21.23596 -20.39773 -18.83503 -18.14875 -17.82678 -17.61158 -17.18692 -17.07428 -16.66160 -16.13666 -16.08070 -15.70917 -15.36540 -15.21615 -14.99850 -14.64576 -14.58244 -14.47781 -14.17021 -13.99690 -13.74977 -13.62403 -13.40453 -13.31465 -13.20011 -13.07820 -12.91744 -12.75784 -12.66360 -12.48854 -12.40279 -12.10984 -11.93643 -11.71214 -11.18982 -11.15346 -11.04538 -10.62982 -10.31513 -10.18339 -9.72060 -9.11832 -8.15403 -6.22951 -0.19747 0.73749 1.01953 1.09462 1.33032 1.35036 1.46172 1.70247 1.89207 2.04276 2.15353 2.40460 2.87351 3.00067 3.10275 3.17795 3.52378 3.67580 3.81371 3.86455 4.12293 4.21625 4.26373 4.34065 4.42691 4.46979 4.52463 4.58024 4.61507 4.64479 4.69351 4.83980 4.88681 4.89614 5.03452 5.08123 5.09913 5.17641 5.27920 5.37323 5.55306 5.77500 5.83584 5.87573 5.93806 6.10854 6.17387 6.43303 6.55741 6.88456 7.43119 7.96163 8.90566 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.004376 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.710619 B = 6396.506272 C = 8108.581493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.396 6.396 3 C 0.076 3.924 4 C 0.077 3.923 5 N -0.457 5.457 6 C 0.210 3.790 7 C -0.535 4.535 8 H 0.047 0.953 9 C 0.026 3.974 10 N -0.918 5.918 11 Si 0.938 3.062 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.284 1.284 15 C 0.384 3.616 16 N -0.364 5.364 17 N -0.339 5.339 18 C 0.181 3.819 19 C -0.062 4.062 20 N -0.476 5.476 21 C 0.185 3.815 22 C -0.003 4.003 23 C -0.168 4.168 24 C -0.095 4.095 25 C 0.014 3.986 26 C 0.309 3.691 27 N -0.418 5.418 28 O -0.170 6.170 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.008 0.992 38 H 0.262 0.738 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.173 0.827 44 H 0.205 0.795 45 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.538 12.800 -13.226 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.050 4.050 5 N -0.181 5.181 6 C 0.086 3.914 7 C -0.574 4.574 8 H 0.065 0.935 9 C -0.173 4.173 10 N -0.559 5.559 11 Si 0.765 3.235 12 H -0.200 1.200 13 H -0.204 1.204 14 H -0.209 1.209 15 C 0.027 3.973 16 N -0.207 5.207 17 N -0.177 5.177 18 C -0.087 4.087 19 C -0.120 4.120 20 N -0.172 5.172 21 C 0.063 3.937 22 C -0.056 4.056 23 C -0.188 4.188 24 C -0.117 4.117 25 C -0.038 4.038 26 C -0.005 4.005 27 N -0.096 5.096 28 O -0.065 6.065 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.131 0.869 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.190 0.810 44 H 0.222 0.778 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.409 13.838 -12.172 18.586 hybrid contribution -0.197 -1.583 0.645 1.720 sum 2.213 12.255 -11.527 16.969 Atomic orbital electron populations 1.22803 0.80824 1.02761 1.00440 1.88208 1.20372 1.27821 1.95139 1.22494 0.91825 0.85029 1.00732 1.21946 0.95148 0.99237 0.88711 1.59492 1.09141 1.19438 1.30059 1.19784 0.98242 0.78494 0.94895 1.21787 1.28890 0.92234 1.14529 0.93491 1.25413 0.96035 0.98272 0.97598 1.70003 1.44471 1.07555 1.33822 0.85847 0.78707 0.78167 0.80746 1.19955 1.20449 1.20928 1.22742 0.92135 0.99938 0.82532 1.74544 0.95597 1.24026 1.26487 1.73776 1.18893 1.21086 1.03972 1.25765 0.84187 1.02455 0.96335 1.20546 0.93135 1.05627 0.92703 1.46286 1.08876 1.55485 1.06579 1.20421 1.00075 0.90539 0.82671 1.22851 0.83682 0.97297 1.01782 1.22117 1.02885 0.92744 1.01015 1.22387 0.89372 1.00814 0.99126 1.16758 0.93356 0.86514 1.07195 1.23728 0.91173 0.92418 0.93202 1.81338 1.08056 1.10893 1.09357 1.84126 1.35435 1.27585 1.59330 0.93770 0.90258 0.92624 0.90789 0.92534 0.93637 0.90018 0.92058 0.97385 0.92858 0.86897 0.88652 0.87252 0.88367 0.80977 0.77811 0.78231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -15.81 7.78 -148.98 -1.16 -16.97 16 3 C 0.08 2.63 6.23 71.98 0.45 3.08 16 4 C 0.08 3.17 4.85 86.31 0.42 3.59 16 5 N -0.46 -19.70 4.67 -710.36 -3.32 -23.02 16 6 C 0.21 10.60 4.63 85.56 0.40 10.99 16 7 C -0.54 -30.18 7.68 25.60 0.20 -29.99 16 8 H 0.05 2.82 6.17 -2.91 -0.02 2.80 16 9 C 0.03 1.49 5.45 84.65 0.46 1.96 16 10 N -0.92 -53.37 13.29 21.44 0.28 -53.08 16 11 Si 0.94 46.30 29.54 68.60 2.03 48.33 16 12 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 13 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 14 H -0.28 -14.42 7.11 99.48 0.71 -13.71 16 15 C 0.38 16.23 5.99 260.11 1.56 17.79 16 16 N -0.36 -16.91 11.23 -58.00 -0.65 -17.56 16 17 N -0.34 -13.85 12.18 -49.54 -0.60 -14.46 16 18 C 0.18 5.44 8.07 137.65 1.11 6.55 16 19 C -0.06 -0.89 10.26 71.24 0.73 -0.16 16 20 N -0.48 -15.36 2.79 -518.91 -1.45 -16.81 16 21 C 0.18 4.27 6.51 85.64 0.56 4.82 16 22 C 0.00 -0.05 6.90 24.95 0.17 0.12 16 23 C -0.17 -1.93 10.77 22.08 0.24 -1.69 16 24 C -0.09 -1.12 10.84 22.42 0.24 -0.88 16 25 C 0.01 0.29 7.08 23.12 0.16 0.45 16 26 C 0.31 6.96 15.88 88.33 1.40 8.37 16 27 N -0.42 -10.92 18.54 19.00 0.35 -10.57 16 28 O -0.17 -4.24 10.67 -5.83 -0.06 -4.30 16 29 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 2.18 5.96 -2.39 -0.01 2.17 16 35 H 0.08 3.15 7.83 -2.39 -0.02 3.13 16 36 H 0.06 3.29 5.50 -2.39 -0.01 3.28 16 37 H 0.01 0.43 6.98 -2.39 -0.02 0.41 16 38 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 41 H 0.11 0.83 7.37 -2.39 -0.02 0.81 16 42 H 0.10 2.83 6.92 -2.39 -0.02 2.81 16 43 H 0.17 2.27 7.40 -2.39 -0.02 2.25 16 44 H 0.20 0.62 8.06 -2.91 -0.02 0.59 16 45 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -81.87 389.70 5.80 -76.07 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 1.03 Total: 5.29 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 9.35 Total: 27.09 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -5.39 Total: -135.51 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -1.22 Total: -21.27 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -81.87 5.80 -76.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555555705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.934 kcal (2) G-P(sol) polarization free energy of solvation -81.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds