Wall clock time and date at job start Wed Apr 1 2020 04:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47457 * 2 1 4 4 N 1.46503 * 109.47400 * 179.97438 * 3 2 1 5 5 C 1.36941 * 119.99457 * 275.30597 * 4 3 2 6 6 H 1.07993 * 120.00159 * 37.58797 * 5 4 3 7 7 C 1.38808 * 119.99578 * 217.57568 * 5 4 3 8 8 N 1.31621 * 120.00160 * 21.42799 * 7 5 4 9 9 Si 1.86799 * 119.99957 * 201.42786 * 7 5 4 10 10 H 1.48499 * 109.47171 * 60.00452 * 9 7 5 11 11 H 1.48508 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47432 * 300.00149 * 9 7 5 13 13 C 1.46492 * 120.00139 * 95.30831 * 4 3 2 14 14 C 1.53000 * 109.47063 * 270.00145 * 13 4 3 15 15 N 1.46505 * 109.47211 * 179.97438 * 14 13 4 16 16 C 1.34769 * 120.00060 * 179.97438 * 15 14 13 17 17 O 1.21563 * 120.00066 * 0.02562 * 16 15 14 18 18 C 1.47766 * 119.99906 * 179.97438 * 16 15 14 19 19 C 1.40605 * 120.27185 * 0.02562 * 18 16 15 20 20 N 1.30793 * 121.53362 * 179.72145 * 19 18 16 21 21 C 1.33786 * 121.72458 * 0.27751 * 20 19 18 22 22 C 1.40754 * 120.83386 * 179.97438 * 21 20 19 23 23 F 1.35103 * 120.11785 * 0.05662 * 22 21 20 24 24 C 1.36336 * 119.76715 * 180.14591 * 22 21 20 25 25 C 1.39298 * 121.06162 * 359.89720 * 24 22 21 26 26 C 1.36144 * 120.86581 * 0.05871 * 25 24 22 27 27 C 1.40554 * 119.67133 * 359.97438 * 26 25 24 28 28 C 1.38999 * 120.27116 * 180.23540 * 18 16 15 29 29 H 1.09004 * 109.46992 * 60.00308 * 1 2 3 30 30 H 1.09005 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47377 * 300.00183 * 1 2 3 32 32 H 1.08996 * 109.47243 * 239.99348 * 2 1 3 33 33 H 1.09003 * 109.47005 * 120.00245 * 2 1 3 34 34 H 1.09001 * 109.46976 * 59.99572 * 3 2 1 35 35 H 1.09003 * 109.47213 * 300.00118 * 3 2 1 36 36 H 0.97005 * 120.00380 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47155 * 149.99945 * 13 4 3 38 38 H 1.09008 * 109.47241 * 30.00127 * 13 4 3 39 39 H 1.09002 * 109.47298 * 59.99888 * 14 13 4 40 40 H 1.08994 * 109.47100 * 299.99928 * 14 13 4 41 41 H 0.97002 * 119.99571 * 0.02562 * 15 14 13 42 42 H 1.08002 * 119.23146 * 359.97438 * 19 18 16 43 43 H 1.08002 * 119.47029 * 179.97438 * 24 22 21 44 44 H 1.08002 * 119.56832 * 180.02562 * 25 24 22 45 45 H 1.08003 * 120.17166 * 180.02562 * 26 25 24 46 46 H 1.08001 * 121.02378 * 0.03342 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.3329 1.1818 6 1 3.8169 0.6875 1.9636 7 6 5.3612 2.0513 1.3742 8 7 5.6020 3.1238 0.6503 9 14 6.5966 1.4960 2.6605 10 1 7.0656 0.1247 2.3369 11 1 7.7542 2.4263 2.6692 12 1 5.9522 1.4960 3.9984 13 6 4.2381 1.5596 -1.2623 14 6 4.4933 0.1640 -1.8352 15 7 5.2258 0.2812 -3.0985 16 6 5.5634 -0.8271 -3.7871 17 8 5.2596 -1.9240 -3.3601 18 6 6.3018 -0.7088 -5.0615 19 6 6.6555 0.5570 -5.5609 20 7 7.3136 0.6901 -6.6834 21 6 7.6782 -0.3690 -7.4149 22 6 8.3856 -0.2041 -8.6205 23 9 8.7071 1.0346 -9.0539 24 6 8.7438 -1.2985 -9.3504 25 6 8.4228 -2.5845 -8.9220 26 6 7.7403 -2.7840 -7.7610 27 6 7.3538 -1.6794 -6.9825 28 6 6.6485 -1.8479 -5.7787 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 6.4209 3.6262 0.7849 37 1 5.1904 2.0592 -1.0846 38 1 3.6493 2.1414 -1.9715 39 1 3.5409 -0.3356 -2.0129 40 1 5.0820 -0.4178 -1.1261 41 1 5.4686 1.1565 -3.4390 42 1 6.3810 1.4398 -5.0026 43 1 9.2861 -1.1664 -10.2750 44 1 8.7188 -3.4345 -9.5189 45 1 7.4977 -3.7860 -7.4393 46 1 6.3861 -2.8325 -5.4207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567426781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:18 Heat of formation + Delta-G solvation = -13.124247 kcal Electronic energy + Delta-G solvation = -28963.641499 eV Core-core repulsion = 24768.076783 eV Total energy + Delta-G solvation = -4195.564717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.14659 -41.19949 -39.33313 -37.26944 -36.52857 -34.45055 -33.54193 -32.92674 -31.46439 -30.69973 -30.14212 -28.23308 -25.59988 -25.17626 -24.51144 -23.30424 -22.41945 -21.24020 -20.88546 -20.17171 -18.79290 -18.31862 -17.65927 -17.03358 -16.53449 -16.08702 -15.85059 -15.53275 -15.29864 -14.90652 -14.86519 -14.37334 -14.33642 -14.16418 -13.92955 -13.78959 -13.43068 -13.32623 -12.98278 -12.83385 -12.69179 -12.61234 -12.09554 -11.82949 -11.60439 -11.55609 -11.22215 -10.97060 -10.75647 -10.69103 -10.52200 -10.40489 -10.31124 -10.09650 -9.94545 -9.77244 -9.58312 -9.32107 -8.69941 -8.54297 -8.48478 -6.66258 -5.87451 -3.46322 -0.19238 0.16668 1.38148 2.22665 3.09748 3.26134 3.35287 3.39937 3.43491 3.55905 3.70931 3.84625 4.22900 4.33314 4.40455 4.44924 4.45766 4.67215 4.77147 4.95811 5.16156 5.23604 5.35744 5.43696 5.50286 5.62427 5.64309 5.68611 5.73273 5.86960 5.98025 6.01965 6.06051 6.16088 6.25492 6.32374 6.37908 6.48828 6.58950 6.62659 6.71931 6.93810 6.95350 7.15011 7.41228 7.47261 7.72720 7.76934 8.33750 8.44394 9.10517 9.72348 10.30053 11.12755 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.002372 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.742536 B =11800.080399 C =12726.413708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.887 5.887 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.136 3.864 14 C 0.096 3.904 15 N -0.710 5.710 16 C 0.555 3.445 17 O -0.539 6.539 18 C -0.174 4.174 19 C 0.165 3.835 20 N -0.466 5.466 21 C 0.108 3.892 22 C 0.123 3.877 23 F -0.121 7.121 24 C -0.134 4.134 25 C -0.097 4.097 26 C -0.094 4.094 27 C -0.089 4.089 28 C 0.006 3.994 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.256 0.744 37 H 0.099 0.901 38 H 0.030 0.970 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.397 0.603 42 H 0.169 0.831 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -8.987 -19.196 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.392 4.392 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.008 3.992 14 C -0.029 4.029 15 N -0.360 5.360 16 C 0.340 3.660 17 O -0.417 6.417 18 C -0.180 4.180 19 C -0.009 4.009 20 N -0.173 5.173 21 C -0.014 4.014 22 C 0.103 3.897 23 F -0.100 7.100 24 C -0.155 4.155 25 C -0.115 4.115 26 C -0.113 4.113 27 C -0.091 4.091 28 C -0.020 4.020 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.117 0.883 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.232 0.768 42 H 0.186 0.814 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.159 0.841 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.238 -8.719 -19.225 21.357 hybrid contribution 0.690 -0.434 0.731 1.095 sum 3.928 -9.153 -18.495 21.006 Atomic orbital electron populations 1.21723 0.97327 1.00409 1.01018 1.22185 0.93827 1.00932 1.01566 1.20945 0.85001 0.92974 0.98976 1.43587 0.99443 1.84787 1.02014 1.18971 1.05737 1.20561 0.93951 0.92076 1.25182 1.00802 0.94506 0.98105 1.69979 1.25767 1.14661 1.42445 0.86473 0.81007 0.78303 0.81654 1.20773 1.21558 1.20607 1.21076 1.00475 0.91037 0.86564 1.22583 0.94898 1.03164 0.82235 1.46095 1.57158 1.08136 1.24603 1.17925 0.79618 0.85096 0.83402 1.90778 1.55126 1.26333 1.69480 1.21231 1.03554 0.95148 0.98033 1.23189 0.90477 0.96379 0.90856 1.67937 1.11400 1.31691 1.06296 1.18940 0.98323 0.89515 0.94647 1.17149 0.99159 0.80606 0.92786 1.91543 1.90224 1.39492 1.88698 1.20957 1.01903 0.91604 1.01050 1.20718 0.97890 0.96431 0.96476 1.21127 0.97593 0.98215 0.94375 1.18638 1.00538 0.93564 0.96392 1.21968 0.89874 0.99862 0.90343 0.93461 0.93810 0.93193 0.92954 0.92339 0.93536 0.94719 0.93394 0.88301 0.95159 0.92620 0.91371 0.76803 0.81377 0.83856 0.84261 0.84113 0.82327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.15 -2.59 6.23 -26.74 -0.17 -2.75 16 3 C 0.15 2.98 5.72 -4.04 -0.02 2.95 16 4 N -0.58 -13.57 2.43 -173.24 -0.42 -13.99 16 5 C -0.26 -6.86 9.45 -15.06 -0.14 -7.00 16 6 H 0.06 1.61 7.92 -52.49 -0.42 1.20 16 7 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 8 N -0.89 -24.20 11.47 55.49 0.64 -23.57 16 9 Si 0.90 21.07 29.60 -169.99 -5.03 16.03 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.14 2.89 5.45 -4.05 -0.02 2.87 16 14 C 0.10 1.85 6.00 -4.04 -0.02 1.82 16 15 N -0.71 -11.20 5.51 -61.28 -0.34 -11.54 16 16 C 0.55 8.85 7.77 -12.37 -0.10 8.75 16 17 O -0.54 -10.36 16.38 5.31 0.09 -10.27 16 18 C -0.17 -2.27 5.89 -104.83 -0.62 -2.89 16 19 C 0.16 2.02 10.68 -17.10 -0.18 1.84 16 20 N -0.47 -6.29 10.17 -10.63 -0.11 -6.40 16 21 C 0.11 1.33 6.61 -84.72 -0.56 0.77 16 22 C 0.12 1.35 7.30 -39.32 -0.29 1.06 16 23 F -0.12 -1.49 17.11 2.25 0.04 -1.45 16 24 C -0.13 -1.02 9.91 -39.87 -0.40 -1.42 16 25 C -0.10 -0.61 9.95 -39.94 -0.40 -1.00 16 26 C -0.09 -0.70 9.77 -39.46 -0.39 -1.09 16 27 C -0.09 -0.94 5.74 -106.82 -0.61 -1.56 16 28 C 0.01 0.07 9.46 -38.43 -0.36 -0.29 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.95 6.64 -51.93 -0.34 0.61 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 36 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.10 2.37 5.52 -51.93 -0.29 2.08 16 38 H 0.03 0.60 7.86 -51.92 -0.41 0.19 16 39 H 0.06 1.09 6.64 -51.93 -0.34 0.74 16 40 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.40 5.22 6.50 -40.82 -0.27 4.96 16 42 H 0.17 1.68 6.37 -52.49 -0.33 1.34 16 43 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 45 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 46 H 0.16 1.62 7.70 -52.49 -0.40 1.22 16 LS Contribution 389.08 15.07 5.86 5.86 Total: -1.00 -31.49 389.08 -9.42 -40.91 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.15 Total: 3.79 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.99 Total: 0.62 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.23 Total: -55.49 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.49 -9.42 -40.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567426781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.787 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds