Wall clock time and date at job start Wed Apr 1 2020 04:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47457 * 2 1 4 4 N 1.46503 * 109.47400 * 179.97438 * 3 2 1 5 5 C 1.36941 * 119.99457 * 275.30597 * 4 3 2 6 6 H 1.07993 * 120.00159 * 37.58797 * 5 4 3 7 7 C 1.38808 * 119.99578 * 217.57568 * 5 4 3 8 8 N 1.31621 * 120.00160 * 21.42799 * 7 5 4 9 9 Si 1.86799 * 119.99957 * 201.42786 * 7 5 4 10 10 H 1.48499 * 109.47171 * 60.00452 * 9 7 5 11 11 H 1.48508 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47432 * 300.00149 * 9 7 5 13 13 C 1.46492 * 120.00139 * 95.30831 * 4 3 2 14 14 C 1.53000 * 109.47063 * 270.00145 * 13 4 3 15 15 N 1.46505 * 109.47211 * 179.97438 * 14 13 4 16 16 C 1.34769 * 120.00060 * 179.97438 * 15 14 13 17 17 O 1.21563 * 120.00066 * 0.02562 * 16 15 14 18 18 C 1.47766 * 119.99906 * 179.97438 * 16 15 14 19 19 C 1.40605 * 120.27185 * 0.02562 * 18 16 15 20 20 N 1.30793 * 121.53362 * 179.72145 * 19 18 16 21 21 C 1.33786 * 121.72458 * 0.27751 * 20 19 18 22 22 C 1.40754 * 120.83386 * 179.97438 * 21 20 19 23 23 F 1.35103 * 120.11785 * 0.05662 * 22 21 20 24 24 C 1.36336 * 119.76715 * 180.14591 * 22 21 20 25 25 C 1.39298 * 121.06162 * 359.89720 * 24 22 21 26 26 C 1.36144 * 120.86581 * 0.05871 * 25 24 22 27 27 C 1.40554 * 119.67133 * 359.97438 * 26 25 24 28 28 C 1.38999 * 120.27116 * 180.23540 * 18 16 15 29 29 H 1.09004 * 109.46992 * 60.00308 * 1 2 3 30 30 H 1.09005 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47377 * 300.00183 * 1 2 3 32 32 H 1.08996 * 109.47243 * 239.99348 * 2 1 3 33 33 H 1.09003 * 109.47005 * 120.00245 * 2 1 3 34 34 H 1.09001 * 109.46976 * 59.99572 * 3 2 1 35 35 H 1.09003 * 109.47213 * 300.00118 * 3 2 1 36 36 H 0.97005 * 120.00380 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47155 * 149.99945 * 13 4 3 38 38 H 1.09008 * 109.47241 * 30.00127 * 13 4 3 39 39 H 1.09002 * 109.47298 * 59.99888 * 14 13 4 40 40 H 1.08994 * 109.47100 * 299.99928 * 14 13 4 41 41 H 0.97002 * 119.99571 * 0.02562 * 15 14 13 42 42 H 1.08002 * 119.23146 * 359.97438 * 19 18 16 43 43 H 1.08002 * 119.47029 * 179.97438 * 24 22 21 44 44 H 1.08002 * 119.56832 * 180.02562 * 25 24 22 45 45 H 1.08003 * 120.17166 * 180.02562 * 26 25 24 46 46 H 1.08001 * 121.02378 * 0.03342 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.3329 1.1818 6 1 3.8169 0.6875 1.9636 7 6 5.3612 2.0513 1.3742 8 7 5.6020 3.1238 0.6503 9 14 6.5966 1.4960 2.6605 10 1 7.0656 0.1247 2.3369 11 1 7.7542 2.4263 2.6692 12 1 5.9522 1.4960 3.9984 13 6 4.2381 1.5596 -1.2623 14 6 4.4933 0.1640 -1.8352 15 7 5.2258 0.2812 -3.0985 16 6 5.5634 -0.8271 -3.7871 17 8 5.2596 -1.9240 -3.3601 18 6 6.3018 -0.7088 -5.0615 19 6 6.6555 0.5570 -5.5609 20 7 7.3136 0.6901 -6.6834 21 6 7.6782 -0.3690 -7.4149 22 6 8.3856 -0.2041 -8.6205 23 9 8.7071 1.0346 -9.0539 24 6 8.7438 -1.2985 -9.3504 25 6 8.4228 -2.5845 -8.9220 26 6 7.7403 -2.7840 -7.7610 27 6 7.3538 -1.6794 -6.9825 28 6 6.6485 -1.8479 -5.7787 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 6.4209 3.6262 0.7849 37 1 5.1904 2.0592 -1.0846 38 1 3.6493 2.1414 -1.9715 39 1 3.5409 -0.3356 -2.0129 40 1 5.0820 -0.4178 -1.1261 41 1 5.4686 1.1565 -3.4390 42 1 6.3810 1.4398 -5.0026 43 1 9.2861 -1.1664 -10.2750 44 1 8.7188 -3.4345 -9.5189 45 1 7.4977 -3.7860 -7.4393 46 1 6.3861 -2.8325 -5.4207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567426781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:17 Heat of formation + Delta-G solvation = -31.428286 kcal Electronic energy + Delta-G solvation = -28964.435222 eV Core-core repulsion = 24768.076783 eV Total energy + Delta-G solvation = -4196.358439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.95109 -42.08482 -40.55566 -38.29634 -38.00181 -35.88712 -34.60517 -34.42986 -32.78893 -32.02938 -30.88443 -29.72710 -27.33466 -26.27905 -25.32151 -24.77521 -23.18477 -22.68006 -22.25078 -21.76311 -19.79009 -19.26025 -18.57587 -18.49893 -17.77351 -17.03955 -16.90929 -16.82615 -16.55604 -16.44452 -15.91375 -15.74060 -15.61224 -15.34034 -15.04784 -14.90109 -14.62027 -14.39897 -14.28641 -14.26647 -14.14353 -13.33590 -13.19358 -13.07541 -12.91590 -12.80918 -12.63611 -12.52766 -12.50428 -12.23936 -12.04163 -11.86597 -11.69888 -11.57354 -11.49916 -11.26983 -10.71894 -10.53273 -10.22376 -9.99399 -9.27823 -8.58872 -7.85894 -5.48702 -1.00389 -0.63105 0.57929 1.37240 1.44271 1.47994 1.53590 2.00216 2.08333 2.49797 2.81290 2.82991 3.03912 3.21301 3.42752 3.56974 3.62654 3.64298 3.76636 3.83833 4.09262 4.22462 4.26223 4.34366 4.38176 4.39113 4.51550 4.65494 4.69714 4.73971 4.76824 4.86270 4.95963 5.00422 5.04846 5.15370 5.20716 5.23571 5.26190 5.27027 5.32880 5.44919 5.63537 5.65705 5.67726 5.73823 6.40657 6.47388 6.55405 7.05651 7.15787 7.82706 8.34784 9.09666 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.002372 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.742536 B =11800.080399 C =12726.413708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.269 4.269 6 H 0.052 0.948 7 C -0.028 4.028 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.275 1.275 13 C 0.143 3.857 14 C 0.120 3.880 15 N -0.705 5.705 16 C 0.561 3.439 17 O -0.575 6.575 18 C -0.194 4.194 19 C 0.163 3.837 20 N -0.494 5.494 21 C 0.087 3.913 22 C 0.082 3.918 23 F -0.138 7.138 24 C -0.108 4.108 25 C -0.086 4.086 26 C -0.088 4.088 27 C -0.101 4.101 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.034 0.966 35 H 0.049 0.951 36 H 0.254 0.746 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.035 0.965 41 H 0.410 0.590 42 H 0.181 0.819 43 H 0.173 0.827 44 H 0.184 0.816 45 H 0.172 0.828 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.356 -11.073 -21.475 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.400 4.400 6 H 0.070 0.930 7 C -0.226 4.226 8 N -0.553 5.553 9 Si 0.778 3.222 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.201 1.201 13 C 0.015 3.985 14 C -0.006 4.006 15 N -0.356 5.356 16 C 0.348 3.652 17 O -0.456 6.456 18 C -0.200 4.200 19 C -0.011 4.011 20 N -0.202 5.202 21 C -0.034 4.034 22 C 0.062 3.938 23 F -0.117 7.117 24 C -0.128 4.128 25 C -0.103 4.103 26 C -0.106 4.106 27 C -0.103 4.103 28 C -0.008 4.008 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.247 0.753 42 H 0.198 0.802 43 H 0.191 0.809 44 H 0.201 0.799 45 H 0.190 0.810 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.526 -10.795 -21.529 24.340 hybrid contribution 0.635 0.107 1.264 1.419 sum 4.162 -10.688 -20.265 23.285 Atomic orbital electron populations 1.21658 0.94328 1.01779 1.01956 1.22012 0.96359 0.98720 1.00354 1.21055 0.83308 0.94584 0.99066 1.43824 1.00854 1.85071 1.01932 1.19107 1.06223 1.19923 0.94721 0.93010 1.25743 1.02120 0.94722 0.99992 1.70073 1.25951 1.15456 1.43806 0.85635 0.79133 0.77453 0.80000 1.21142 1.21565 1.20070 1.20945 0.99328 0.91891 0.86294 1.22019 0.94507 1.01183 0.82924 1.45901 1.56995 1.09184 1.23537 1.18265 0.78837 0.84208 0.83924 1.90747 1.56725 1.27528 1.70649 1.20913 1.05484 0.96303 0.97278 1.23301 0.90353 0.96566 0.90840 1.67931 1.12438 1.32904 1.06923 1.19336 0.98793 0.90078 0.95230 1.17512 1.01546 0.81123 0.93653 1.91494 1.90655 1.40656 1.88866 1.21450 0.99326 0.91089 1.00916 1.21249 0.96026 0.97022 0.96001 1.21557 0.96471 0.98503 0.94082 1.18822 1.00929 0.94006 0.96538 1.22192 0.88638 0.99774 0.90242 0.92121 0.92242 0.92670 0.93465 0.94240 0.94704 0.93233 0.93710 0.90788 0.93589 0.92750 0.94669 0.75258 0.80231 0.80928 0.79868 0.81036 0.81191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.91 71.98 0.71 -3.07 16 2 C -0.13 -4.76 6.23 30.59 0.19 -4.56 16 3 C 0.15 5.88 5.72 86.38 0.49 6.37 16 4 N -0.60 -28.52 2.43 -702.02 -1.71 -30.22 16 5 C -0.27 -14.41 9.45 84.03 0.79 -13.62 16 6 H 0.05 2.81 7.92 -2.91 -0.02 2.79 16 7 C -0.03 -1.49 4.95 84.86 0.42 -1.07 16 8 N -0.91 -50.71 11.47 21.65 0.25 -50.46 16 9 Si 0.95 44.12 29.60 68.60 2.03 46.16 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 13 C 0.14 6.20 5.45 86.38 0.47 6.67 16 14 C 0.12 4.75 6.00 86.38 0.52 5.27 16 15 N -0.71 -22.85 5.51 -466.05 -2.57 -25.42 16 16 C 0.56 18.27 7.77 86.76 0.67 18.95 16 17 O -0.58 -22.56 16.38 -3.91 -0.06 -22.63 16 18 C -0.19 -5.12 5.89 -20.00 -0.12 -5.24 16 19 C 0.16 4.11 10.68 85.43 0.91 5.03 16 20 N -0.49 -13.68 10.17 -187.54 -1.91 -15.59 16 21 C 0.09 2.12 6.61 40.33 0.27 2.38 16 22 C 0.08 1.70 7.30 22.44 0.16 1.87 16 23 F -0.14 -3.40 17.11 44.97 0.77 -2.63 16 24 C -0.11 -1.26 9.91 22.08 0.22 -1.04 16 25 C -0.09 -0.65 9.95 22.04 0.22 -0.43 16 26 C -0.09 -0.97 9.77 22.35 0.22 -0.75 16 27 C -0.10 -1.98 5.74 -21.29 -0.12 -2.10 16 28 C 0.02 0.40 9.46 23.01 0.22 0.62 16 29 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.70 6.64 -2.39 -0.02 1.69 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.03 1.47 8.08 -2.39 -0.02 1.45 16 35 H 0.05 1.84 7.83 -2.39 -0.02 1.82 16 36 H 0.25 13.74 8.31 -92.70 -0.77 12.97 16 37 H 0.07 3.66 5.52 -2.39 -0.01 3.65 16 38 H 0.05 1.82 7.86 -2.38 -0.02 1.81 16 39 H 0.05 2.17 6.64 -2.39 -0.02 2.15 16 40 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.41 11.08 6.50 -92.71 -0.60 10.48 16 42 H 0.18 3.76 6.37 -2.91 -0.02 3.74 16 43 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 44 H 0.18 -0.11 8.06 -2.91 -0.02 -0.13 16 45 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 46 H 0.17 3.26 7.70 -2.91 -0.02 3.24 16 Total: -1.00 -71.14 389.08 3.47 -67.68 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.41 Total: 17.86 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 6.25 Total: 15.26 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -5.93 Total: -121.69 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.06 Total: -22.63 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.77 Total: -2.63 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.16 kcal Total: -71.14 3.47 -67.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567426781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.247 kcal (2) G-P(sol) polarization free energy of solvation -71.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds