Wall clock time and date at job start Wed Apr 1 2020 03:21:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53001 * 109.46901 * 2 1
4 4 C 1.50694 * 109.47265 * 240.00361 * 2 1 3
5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1
6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1
7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2
8 8 Si 1.86789 * 120.00458 * 180.02562 * 6 4 2
9 9 H 1.48503 * 109.47675 * 89.99681 * 8 6 4
10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4
11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4
12 12 C 1.52997 * 109.47337 * 119.99728 * 2 1 3
13 13 N 1.46499 * 109.47555 * 300.00682 * 12 2 1
14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 2
15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12
16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12
17 17 H 1.09000 * 109.46844 * 304.72067 * 16 14 13
18 18 O 1.42891 * 109.46948 * 184.72242 * 16 14 13
19 19 C 1.50702 * 109.47102 * 64.71947 * 16 14 13
20 20 C 1.38311 * 119.87772 * 84.72536 * 19 16 14
21 21 C 1.38030 * 120.11638 * 179.76460 * 20 19 16
22 22 C 1.39300 * 119.88036 * 0.48717 * 21 20 19
23 23 C 1.48463 * 120.11928 * 179.79229 * 22 21 20
24 24 N 1.34042 * 126.67400 * 180.02562 * 23 22 21
25 25 N 1.28985 * 107.26898 * 179.97438 * 24 23 22
26 26 N 1.28722 * 108.94337 * 0.02562 * 25 24 23
27 27 H 0.97004 * 125.34648 * 180.02562 * 26 25 24
28 28 N 1.28876 * 109.31823 * 359.74888 * 26 25 24
29 29 C 1.39300 * 119.76334 * 359.76785 * 22 21 20
30 30 C 1.38030 * 119.88269 * 359.97438 * 29 22 21
31 31 H 1.08993 * 109.47298 * 299.99321 * 1 2 3
32 32 H 1.09001 * 109.47411 * 60.00254 * 1 2 3
33 33 H 1.09002 * 109.46412 * 180.02562 * 1 2 3
34 34 H 1.08992 * 109.47503 * 179.97438 * 3 2 1
35 35 H 1.09000 * 109.47703 * 300.00482 * 3 2 1
36 36 H 1.09007 * 109.46685 * 60.00055 * 3 2 1
37 37 H 0.97005 * 119.99656 * 180.02562 * 7 6 4
38 38 H 1.08998 * 109.47382 * 180.02562 * 12 2 1
39 39 H 1.09002 * 109.47216 * 60.00680 * 12 2 1
40 40 H 0.97000 * 119.99484 * 359.97438 * 13 12 2
41 41 H 0.96700 * 114.00158 * 299.99850 * 18 16 14
42 42 H 1.08003 * 119.94474 * 0.02562 * 20 19 16
43 43 H 1.08003 * 120.06061 * 180.25560 * 21 20 19
44 44 H 1.08007 * 120.05916 * 179.97438 * 29 22 21
45 45 H 1.08003 * 119.94093 * 179.97438 * 30 29 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0323 -0.7103 -1.2304
5 1 2.6533 -1.5884 -1.1314
6 6 1.6993 -0.2393 -2.4828
7 7 0.9427 0.8297 -2.6033
8 14 2.3214 -1.1201 -4.0079
9 1 1.3429 -2.1616 -4.4119
10 1 2.4865 -0.1411 -5.1122
11 1 3.6294 -1.7580 -3.7123
12 6 2.0400 -0.7212 1.2492
13 7 1.5517 -0.0307 2.4454
14 6 1.8777 -0.4908 3.6695
15 8 2.5751 -1.4769 3.7807
16 6 1.3702 0.2159 4.9000
17 1 1.6578 1.2665 4.8602
18 8 1.9362 -0.3891 6.0642
19 6 -0.1319 0.1081 4.9576
20 6 -0.7214 -1.0133 5.5125
21 6 -2.0967 -1.1150 5.5721
22 6 -2.8910 -0.0902 5.0630
23 6 -4.3708 -0.1961 5.1203
24 7 -5.2559 0.7055 4.6725
25 7 -6.4337 0.2363 4.9097
26 7 -6.3190 -0.9107 5.4826
27 1 -7.0571 -1.4732 5.7651
28 7 -5.0697 -1.1972 5.6169
29 6 -2.2921 1.0347 4.5005
30 6 -0.9158 1.1286 4.4507
31 1 -0.3633 0.5137 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 -0.3632 -1.0277 0.0005
34 1 3.1299 1.4426 0.0005
35 1 1.6766 1.9565 -0.8899
36 1 1.6765 1.9563 0.8901
37 1 0.7081 1.1609 -3.4844
38 1 3.1300 -0.7208 1.2495
39 1 1.6768 -1.7489 1.2493
40 1 0.9942 0.7581 2.3564
41 1 1.7210 -1.3265 6.1645
42 1 -0.1046 -1.8090 5.9036
43 1 -2.5561 -1.9892 6.0093
44 1 -2.9034 1.8319 4.1040
45 1 -0.4504 2.0001 4.0144
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001589267371.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:21:59
Heat of formation + Delta-G solvation = 35.302749 kcal
Electronic energy + Delta-G solvation = -29853.168282 eV
Core-core repulsion = 25679.623479 eV
Total energy + Delta-G solvation = -4173.544803 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-45.48161 -41.48577 -39.99600 -38.36477 -37.26563 -35.45243 -35.09790 -34.58478
-32.94256 -32.04979 -31.91521 -28.78721 -27.53332 -27.36541 -26.39422 -25.78222
-24.77123 -23.49180 -22.49012 -21.57241 -20.61395 -20.22651 -19.16431 -18.54018
-18.16016 -17.74427 -17.34657 -17.18937 -16.61196 -16.21923 -16.02029 -15.60939
-15.23218 -14.97338 -14.86015 -14.67114 -14.48708 -14.23220 -14.04684 -13.99739
-13.68073 -13.28499 -13.17087 -13.07895 -12.87651 -12.67145 -12.59305 -12.43715
-12.34410 -12.23772 -12.19150 -12.09947 -11.96396 -11.75251 -11.46337 -11.25206
-10.75523 -10.62586 -10.38404 -9.97397 -9.95854 -9.58456 -8.01063 -6.16450
-0.40195 0.14254 0.38873 1.21455 1.40799 1.42391 1.45846 1.53444
1.57997 2.22460 2.48547 2.63807 2.73514 3.13787 3.22679 3.38783
3.49040 3.80272 3.86939 3.98928 4.17516 4.25592 4.40138 4.41740
4.45116 4.53221 4.63507 4.74139 4.76713 5.01057 5.03538 5.08570
5.12860 5.22388 5.27502 5.36799 5.38217 5.44088 5.58722 5.59760
5.69017 5.70295 5.82254 6.18252 6.24137 6.42645 6.45414 6.67187
6.87822 7.09432 7.23494 7.51203 8.97486
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.010093 B = 0.002954 C = 0.002449
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2773.557668 B = 9477.975231 C =11431.928678
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C 0.053 3.947
3 C -0.123 4.123
4 C -0.529 4.529
5 H 0.043 0.957
6 C 0.030 3.970
7 N -0.897 5.897
8 Si 0.942 3.058
9 H -0.281 1.281
10 H -0.283 1.283
11 H -0.276 1.276
12 C 0.147 3.853
13 N -0.701 5.701
14 C 0.481 3.519
15 O -0.581 6.581
16 C 0.146 3.854
17 H 0.159 0.841
18 O -0.538 6.538
19 C -0.102 4.102
20 C -0.113 4.113
21 C -0.076 4.076
22 C -0.029 4.029
23 C 0.209 3.791
24 N -0.292 5.292
25 N -0.057 5.057
26 N -0.200 5.200
27 H 0.494 0.506
28 N -0.295 5.295
29 C -0.075 4.075
30 C -0.105 4.105
31 H 0.038 0.962
32 H 0.061 0.939
33 H 0.013 0.987
34 H 0.019 0.981
35 H 0.062 0.938
36 H 0.041 0.959
37 H 0.260 0.740
38 H 0.040 0.960
39 H 0.037 0.963
40 H 0.409 0.591
41 H 0.390 0.610
42 H 0.144 0.856
43 H 0.146 0.854
44 H 0.145 0.855
45 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.409 0.279 19.395 23.026
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.053 3.947
3 C -0.181 4.181
4 C -0.568 4.568
5 H 0.061 0.939
6 C -0.170 4.170
7 N -0.536 5.536
8 Si 0.769 3.231
9 H -0.207 1.207
10 H -0.209 1.209
11 H -0.201 1.201
12 C 0.023 3.977
13 N -0.353 5.353
14 C 0.267 3.733
15 O -0.461 6.461
16 C 0.083 3.917
17 H 0.176 0.824
18 O -0.344 6.344
19 C -0.103 4.103
20 C -0.131 4.131
21 C -0.096 4.096
22 C -0.032 4.032
23 C -0.070 4.070
24 N -0.164 5.164
25 N -0.052 5.052
26 N -0.051 5.051
27 H 0.353 0.647
28 N -0.148 5.148
29 C -0.095 4.095
30 C -0.123 4.123
31 H 0.057 0.943
32 H 0.080 0.920
33 H 0.032 0.968
34 H 0.038 0.962
35 H 0.081 0.919
36 H 0.060 0.940
37 H 0.069 0.931
38 H 0.058 0.942
39 H 0.056 0.944
40 H 0.247 0.753
41 H 0.241 0.759
42 H 0.161 0.839
43 H 0.163 0.837
44 H 0.163 0.837
45 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges -12.417 0.494 19.313 22.965
hybrid contribution -0.200 -1.410 -1.180 1.849
sum -12.617 -0.916 18.133 22.109
Atomic orbital electron populations
1.21648 0.97132 0.98404 1.00431 1.18329 0.93128 0.93098 0.90176
1.21692 0.98018 0.97742 1.00618 1.21282 1.31692 1.12149 0.91666
0.93851 1.25416 0.95191 0.95575 1.00850 1.69904 1.36911 1.23207
1.23539 0.85811 0.78639 0.78520 0.80136 1.20658 1.20850 1.20106
1.21290 0.97088 0.95069 0.84279 1.46115 1.52062 1.31878 1.05240
1.21930 0.80219 0.84911 0.86198 1.90681 1.40072 1.28185 1.87176
1.20752 0.88701 0.99634 0.82639 0.82367 1.86593 1.76508 1.30269
1.41053 1.20413 0.94556 0.95892 0.99469 1.21016 0.94698 0.97761
0.99589 1.21197 0.93062 0.97921 0.97443 1.17451 0.84420 0.97505
1.03846 1.23843 0.96887 0.87825 0.98466 1.76081 0.94626 1.25487
1.20253 1.78860 1.18400 0.97419 1.10513 1.47791 1.06785 1.14051
1.36498 0.64654 1.74888 0.91599 1.25194 1.23100 1.21300 0.95102
0.96773 0.96348 1.21199 0.92886 0.99334 0.98887 0.94281 0.92006
0.96751 0.96213 0.91905 0.94046 0.93071 0.94170 0.94414 0.75309
0.75906 0.83856 0.83654 0.83675 0.82179
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16
2 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16
3 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16
4 C -0.53 -27.62 8.01 25.60 0.21 -27.41 16
5 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16
6 C 0.03 1.54 5.15 84.66 0.44 1.98 16
7 N -0.90 -47.23 9.35 21.45 0.20 -47.03 16
8 Si 0.94 42.35 29.54 68.60 2.03 44.38 16
9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16
10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16
11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16
12 C 0.15 6.00 4.50 86.38 0.39 6.39 16
13 N -0.70 -22.26 4.91 -463.06 -2.27 -24.53 16
14 C 0.48 14.71 7.16 87.66 0.63 15.33 16
15 O -0.58 -22.51 16.32 15.95 0.26 -22.25 16
16 C 0.15 3.12 3.62 29.10 0.11 3.22 16
17 H 0.16 2.60 8.05 -2.39 -0.02 2.58 16
18 O -0.54 -12.08 12.79 -129.99 -1.66 -13.75 16
19 C -0.10 -1.97 4.95 -19.83 -0.10 -2.06 16
20 C -0.11 -2.10 9.31 22.24 0.21 -1.90 16
21 C -0.08 -1.43 9.70 22.48 0.22 -1.21 16
22 C -0.03 -0.60 5.88 -20.04 -0.12 -0.72 16
23 C 0.21 4.55 7.94 137.38 1.09 5.65 16
24 N -0.29 -6.82 12.23 -52.19 -0.64 -7.46 16
25 N -0.06 -1.09 13.47 37.02 0.50 -0.59 16
26 N -0.20 -2.59 7.90 37.02 0.29 -2.30 16
27 H 0.49 1.28 8.96 -347.54 -3.12 -1.83 16
28 N -0.30 -5.33 12.08 -52.13 -0.63 -5.96 16
29 C -0.08 -1.46 9.70 22.48 0.22 -1.24 16
30 C -0.11 -1.84 9.48 22.24 0.21 -1.63 16
31 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16
32 H 0.06 3.01 6.07 -2.39 -0.01 2.99 16
33 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16
34 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16
35 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16
36 H 0.04 1.43 6.86 -2.38 -0.02 1.41 16
37 H 0.26 13.22 8.31 -92.70 -0.77 12.45 16
38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16
39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
40 H 0.41 11.09 5.98 -92.71 -0.55 10.53 16
41 H 0.39 7.25 7.13 -74.06 -0.53 6.72 16
42 H 0.14 2.20 6.61 -2.91 -0.02 2.18 16
43 H 0.15 2.31 7.88 -2.91 -0.02 2.29 16
44 H 0.15 2.62 7.89 -2.91 -0.02 2.60 16
45 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16
Total: -1.00 -69.43 377.01 -0.42 -69.85
By element:
Atomic # 1 Polarization: 23.20 SS G_CDS: -3.12 Total: 20.08 kcal
Atomic # 6 Polarization: -15.08 SS G_CDS: 4.63 Total: -10.45 kcal
Atomic # 7 Polarization: -85.31 SS G_CDS: -2.55 Total: -87.86 kcal
Atomic # 8 Polarization: -34.59 SS G_CDS: -1.40 Total: -36.00 kcal
Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal
Total: -69.43 -0.42 -69.85 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001589267371.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.153 kcal
(2) G-P(sol) polarization free energy of solvation -69.434 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.719 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.303 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds