Wall clock time and date at job start Wed Apr 1 2020 03:22:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53005 * 109.46800 * 2 1
4 4 C 1.50701 * 109.47145 * 240.00569 * 2 1 3
5 5 H 1.08009 * 119.99651 * 241.34574 * 4 2 1
6 6 C 1.37868 * 120.00338 * 61.34033 * 4 2 1
7 7 N 1.31521 * 120.00453 * 193.97821 * 6 4 2
8 8 Si 1.86801 * 120.00217 * 13.98060 * 6 4 2
9 9 H 1.48505 * 109.47124 * 84.54309 * 8 6 4
10 10 H 1.48497 * 109.47512 * 204.54782 * 8 6 4
11 11 H 1.48505 * 109.46983 * 324.55043 * 8 6 4
12 12 C 1.52998 * 109.47584 * 119.99837 * 2 1 3
13 13 N 1.46496 * 109.47329 * 300.00315 * 12 2 1
14 14 C 1.34773 * 120.00133 * 180.26769 * 13 12 2
15 15 O 1.21281 * 120.00026 * 359.73131 * 14 13 12
16 16 C 1.50704 * 119.99878 * 179.72358 * 14 13 12
17 17 H 1.09000 * 109.47311 * 55.00478 * 16 14 13
18 18 O 1.42903 * 109.47059 * 175.00665 * 16 14 13
19 19 C 1.50701 * 109.47177 * 295.00331 * 16 14 13
20 20 C 1.38319 * 119.88182 * 279.72840 * 19 16 14
21 21 C 1.38031 * 120.11539 * 179.76724 * 20 19 16
22 22 C 1.39303 * 119.87875 * 0.48561 * 21 20 19
23 23 C 1.48467 * 120.11586 * 179.79076 * 22 21 20
24 24 N 1.34038 * 126.67646 * 179.97438 * 23 22 21
25 25 N 1.28987 * 107.27085 * 179.97438 * 24 23 22
26 26 N 1.28727 * 108.94018 * 0.02562 * 25 24 23
27 27 H 0.97007 * 125.33483 * 179.97438 * 26 25 24
28 28 N 1.28865 * 109.31757 * 359.74774 * 26 25 24
29 29 C 1.39294 * 119.76971 * 359.76627 * 22 21 20
30 30 C 1.38029 * 119.88023 * 0.02562 * 29 22 21
31 31 H 1.08998 * 109.47272 * 309.36723 * 1 2 3
32 32 H 1.08992 * 109.47141 * 69.36784 * 1 2 3
33 33 H 1.09004 * 109.46813 * 189.36595 * 1 2 3
34 34 H 1.09008 * 109.47129 * 180.02562 * 3 2 1
35 35 H 1.09004 * 109.47084 * 299.99863 * 3 2 1
36 36 H 1.08999 * 109.47102 * 60.00497 * 3 2 1
37 37 H 0.96991 * 120.00307 * 180.02562 * 7 6 4
38 38 H 1.08999 * 109.47488 * 180.02562 * 12 2 1
39 39 H 1.09007 * 109.46656 * 60.00290 * 12 2 1
40 40 H 0.97008 * 119.99791 * 359.97438 * 13 12 2
41 41 H 0.96693 * 113.99823 * 59.99781 * 18 16 14
42 42 H 1.07993 * 119.94297 * 0.02562 * 20 19 16
43 43 H 1.07997 * 120.05890 * 180.24774 * 21 20 19
44 44 H 1.07997 * 120.06520 * 180.02562 * 29 22 21
45 45 H 1.08005 * 119.94274 * 179.97438 * 30 29 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0324 -0.7103 -1.2305
5 1 2.6353 -1.6010 -1.1316
6 6 1.7223 -0.2233 -2.4825
7 7 1.9157 -0.9724 -3.5461
8 14 1.0275 1.5007 -2.6684
9 1 2.1416 2.4818 -2.7083
10 1 0.2468 1.5866 -3.9287
11 1 0.1417 1.8043 -1.5158
12 6 2.0401 -0.7212 1.2492
13 7 1.5518 -0.0307 2.4454
14 6 1.8820 -0.4879 3.6694
15 8 2.5793 -1.4740 3.7807
16 6 1.3847 0.2261 4.8999
17 1 0.2983 0.3047 4.8603
18 8 1.7671 -0.5088 6.0643
19 6 1.9865 1.6066 4.9572
20 6 3.2763 1.7772 5.4268
21 6 3.8339 3.0389 5.4769
22 6 3.0916 4.1426 5.0630
23 6 3.6845 5.5026 5.1189
24 7 3.0931 6.6493 4.7559
25 7 3.9420 7.5990 4.9591
26 7 5.0289 7.0944 5.4293
27 1 5.8240 7.5969 5.6665
28 7 4.8931 5.8177 5.5400
29 6 1.7913 3.9658 4.5959
30 6 1.2448 2.6992 4.5459
31 1 -0.3634 0.6518 0.7945
32 1 -0.3633 0.3621 -0.9617
33 1 -0.3633 -1.0140 0.1672
34 1 3.1300 1.4426 -0.0005
35 1 1.6766 1.9564 -0.8900
36 1 1.6767 1.9563 0.8900
37 1 1.6979 -0.6297 -4.4269
38 1 3.1301 -0.7208 1.2494
39 1 1.6768 -1.7489 1.2492
40 1 0.9943 0.7582 2.3564
41 1 2.7226 -0.6180 6.1643
42 1 3.8495 0.9213 5.7509
43 1 4.8425 3.1705 5.8399
44 1 1.2116 4.8180 4.2734
45 1 0.2365 2.5610 4.1843
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001589267372.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:22:04
Heat of formation + Delta-G solvation = 77.500209 kcal
Electronic energy + Delta-G solvation = -29974.357659 eV
Core-core repulsion = 25802.642675 eV
Total energy + Delta-G solvation = -4171.714984 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-44.79477 -40.51704 -39.05999 -37.20218 -36.18871 -34.73054 -34.02143 -33.39752
-31.76418 -31.34358 -31.16113 -27.93400 -26.42731 -25.74269 -25.10534 -24.86159
-23.92175 -22.81591 -21.68762 -20.41120 -19.57699 -19.30489 -18.03055 -17.56995
-17.47666 -16.60321 -16.27793 -16.06949 -15.40106 -15.04920 -14.85838 -14.76344
-14.31397 -13.96683 -13.92036 -13.62108 -13.47180 -13.12093 -12.99156 -12.89706
-12.67674 -12.46973 -12.25092 -12.08554 -11.99686 -11.72362 -11.64391 -11.37757
-11.33675 -11.28039 -10.94505 -10.48035 -10.35504 -10.20444 -10.10114 -9.63262
-9.30374 -9.16415 -8.83339 -8.70863 -8.63090 -8.48085 -6.17268 -4.14927
0.30787 0.83536 1.05651 1.88632 1.97153 2.71457 3.22167 3.29445
3.31017 3.33455 3.37274 3.49880 3.83849 4.21476 4.30974 4.33216
4.51199 4.62859 4.86941 4.90208 4.96465 5.07424 5.12812 5.13454
5.33111 5.44056 5.67489 5.72131 5.92448 6.00708 6.01459 6.03133
6.07339 6.13582 6.31830 6.42112 6.47415 6.49171 6.57994 6.65752
6.68779 6.90436 7.17485 7.25762 7.39026 7.68618 7.78478 7.79613
8.36661 8.44687 8.87790 9.46477 10.95794
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.009643 B = 0.003285 C = 0.002627
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2902.851309 B = 8521.159638 C =10657.435301
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.029 3.971
3 C -0.147 4.147
4 C -0.514 4.514
5 H 0.076 0.924
6 C 0.076 3.924
7 N -0.891 5.891
8 Si 0.884 3.116
9 H -0.286 1.286
10 H -0.305 1.305
11 H -0.248 1.248
12 C 0.141 3.859
13 N -0.713 5.713
14 C 0.483 3.517
15 O -0.536 6.536
16 C 0.131 3.869
17 H 0.133 0.867
18 O -0.530 6.530
19 C -0.093 4.093
20 C -0.107 4.107
21 C -0.072 4.072
22 C -0.018 4.018
23 C 0.222 3.778
24 N -0.266 5.266
25 N -0.049 5.049
26 N -0.228 5.228
27 H 0.476 0.524
28 N -0.293 5.293
29 C -0.069 4.069
30 C -0.108 4.108
31 H 0.022 0.978
32 H 0.057 0.943
33 H 0.048 0.952
34 H 0.052 0.948
35 H 0.042 0.958
36 H 0.030 0.970
37 H 0.265 0.735
38 H 0.063 0.937
39 H 0.065 0.935
40 H 0.397 0.603
41 H 0.382 0.618
42 H 0.131 0.869
43 H 0.136 0.864
44 H 0.140 0.860
45 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.288 14.457 21.085 25.668
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C 0.028 3.972
3 C -0.204 4.204
4 C -0.552 4.552
5 H 0.095 0.905
6 C -0.127 4.127
7 N -0.527 5.527
8 Si 0.717 3.283
9 H -0.214 1.214
10 H -0.234 1.234
11 H -0.174 1.174
12 C 0.019 3.981
13 N -0.364 5.364
14 C 0.266 3.734
15 O -0.414 6.414
16 C 0.067 3.933
17 H 0.151 0.849
18 O -0.335 6.335
19 C -0.095 4.095
20 C -0.125 4.125
21 C -0.093 4.093
22 C -0.021 4.021
23 C -0.058 4.058
24 N -0.140 5.140
25 N -0.044 5.044
26 N -0.073 5.073
27 H 0.330 0.670
28 N -0.145 5.145
29 C -0.089 4.089
30 C -0.126 4.126
31 H 0.041 0.959
32 H 0.076 0.924
33 H 0.067 0.933
34 H 0.071 0.929
35 H 0.060 0.940
36 H 0.048 0.952
37 H 0.075 0.925
38 H 0.081 0.919
39 H 0.083 0.917
40 H 0.232 0.768
41 H 0.232 0.768
42 H 0.149 0.851
43 H 0.153 0.847
44 H 0.158 0.842
45 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges 2.154 14.346 20.964 25.494
hybrid contribution 0.656 1.351 -0.375 1.548
sum 2.810 15.697 20.589 26.043
Atomic orbital electron populations
1.22307 0.97808 0.99880 1.00045 1.18715 0.92530 0.92243 0.93708
1.22357 1.01160 0.98271 0.98616 1.20707 1.34154 1.12351 0.87984
0.90549 1.24967 0.94642 0.97278 0.95780 1.69947 1.48105 1.35916
0.98745 0.87310 0.79380 0.85535 0.76074 1.21380 1.23356 1.17437
1.21564 0.98665 0.95899 0.82019 1.46312 1.52411 1.31605 1.06115
1.21140 0.81506 0.85307 0.85402 1.90717 1.38051 1.26133 1.86498
1.20788 1.00862 0.86476 0.85128 0.84915 1.86615 1.29699 1.75965
1.41224 1.20471 0.95051 0.95218 0.98767 1.20816 0.94537 0.97318
0.99804 1.21093 0.99782 0.91063 0.97326 1.17252 0.94547 0.86056
1.04283 1.23697 0.87638 0.95500 0.98973 1.76097 1.22885 0.96231
1.18741 1.78928 0.91334 1.22580 1.11538 1.47732 1.15171 1.03712
1.40733 0.66998 1.74925 1.20500 0.96447 1.22629 1.21160 0.93431
0.97986 0.96331 1.20957 1.00410 0.91305 0.99952 0.95942 0.92444
0.93322 0.92881 0.94008 0.95150 0.92523 0.91899 0.91665 0.76807
0.76800 0.85077 0.84657 0.84182 0.84488
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.81 7.53 37.16 0.28 -2.53 16
2 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16
3 C -0.15 -2.92 7.52 37.16 0.28 -2.64 16
4 C -0.51 -13.59 8.62 -34.44 -0.30 -13.88 16
5 H 0.08 2.22 7.99 -52.48 -0.42 1.80 16
6 C 0.08 2.09 5.32 -17.82 -0.09 2.00 16
7 N -0.89 -26.42 13.96 55.43 0.77 -25.64 16
8 Si 0.88 20.86 22.79 -169.99 -3.87 16.99 16
9 H -0.29 -6.77 7.10 56.52 0.40 -6.37 16
10 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16
11 H -0.25 -5.28 4.65 56.52 0.26 -5.01 16
12 C 0.14 2.71 4.49 -4.04 -0.02 2.69 16
13 N -0.71 -10.85 4.96 -60.29 -0.30 -11.15 16
14 C 0.48 7.19 7.15 -10.99 -0.08 7.11 16
15 O -0.54 -10.03 16.32 -14.30 -0.23 -10.26 16
16 C 0.13 1.43 3.62 -29.03 -0.11 1.33 16
17 H 0.13 1.19 8.00 -51.93 -0.42 0.78 16
18 O -0.53 -6.14 12.84 -55.09 -0.71 -6.84 16
19 C -0.09 -0.92 4.93 -104.56 -0.52 -1.44 16
20 C -0.11 -1.02 9.30 -39.63 -0.37 -1.39 16
21 C -0.07 -0.69 9.70 -39.26 -0.38 -1.07 16
22 C -0.02 -0.19 5.88 -104.89 -0.62 -0.80 16
23 C 0.22 2.39 7.94 -156.31 -1.24 1.15 16
24 N -0.27 -3.05 12.23 32.15 0.39 -2.66 16
25 N -0.05 -0.47 13.47 60.35 0.81 0.35 16
26 N -0.23 -1.55 7.90 60.35 0.48 -1.08 16
27 H 0.48 0.90 8.96 -340.37 -3.05 -2.15 16
28 N -0.29 -2.72 12.08 32.17 0.39 -2.33 16
29 C -0.07 -0.66 9.70 -39.27 -0.38 -1.04 16
30 C -0.11 -0.96 9.65 -39.63 -0.38 -1.34 16
31 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16
32 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16
33 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16
34 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16
35 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16
36 H 0.03 0.49 6.86 -51.93 -0.36 0.14 16
37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16
39 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16
40 H 0.40 5.20 6.26 -40.82 -0.26 4.94 16
41 H 0.38 3.62 7.23 45.56 0.33 3.95 16
42 H 0.13 1.06 6.76 -52.49 -0.35 0.70 16
43 H 0.14 1.11 7.88 -52.49 -0.41 0.70 16
44 H 0.14 1.21 7.89 -52.49 -0.41 0.80 16
45 H 0.14 0.90 8.03 -52.48 -0.42 0.48 16
LS Contribution 367.66 15.07 5.54 5.54
Total: -1.00 -34.69 367.66 -8.17 -42.86
By element:
Atomic # 1 Polarization: 12.98 SS G_CDS: -7.45 Total: 5.53 kcal
Atomic # 6 Polarization: -7.31 SS G_CDS: -4.00 Total: -11.30 kcal
Atomic # 7 Polarization: -45.06 SS G_CDS: 2.55 Total: -42.51 kcal
Atomic # 8 Polarization: -16.17 SS G_CDS: -0.94 Total: -17.11 kcal
Atomic # 14 Polarization: 20.86 SS G_CDS: -3.87 Total: 16.99 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -34.69 -8.17 -42.86 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001589267372.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.361 kcal
(2) G-P(sol) polarization free energy of solvation -34.689 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.500 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds