Wall clock time and date at job start Wed Apr 1 2020 03:22:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53005 * 109.46800 * 2 1
4 4 C 1.50701 * 109.47145 * 240.00569 * 2 1 3
5 5 H 1.08009 * 119.99651 * 241.34574 * 4 2 1
6 6 C 1.37868 * 120.00338 * 61.34033 * 4 2 1
7 7 N 1.31521 * 120.00453 * 193.97821 * 6 4 2
8 8 Si 1.86801 * 120.00217 * 13.98060 * 6 4 2
9 9 H 1.48505 * 109.47124 * 84.54309 * 8 6 4
10 10 H 1.48497 * 109.47512 * 204.54782 * 8 6 4
11 11 H 1.48505 * 109.46983 * 324.55043 * 8 6 4
12 12 C 1.52998 * 109.47584 * 119.99837 * 2 1 3
13 13 N 1.46496 * 109.47329 * 300.00315 * 12 2 1
14 14 C 1.34773 * 120.00133 * 180.26769 * 13 12 2
15 15 O 1.21281 * 120.00026 * 359.73131 * 14 13 12
16 16 C 1.50704 * 119.99878 * 179.72358 * 14 13 12
17 17 H 1.09000 * 109.47311 * 55.00478 * 16 14 13
18 18 O 1.42903 * 109.47059 * 175.00665 * 16 14 13
19 19 C 1.50701 * 109.47177 * 295.00331 * 16 14 13
20 20 C 1.38319 * 119.88182 * 279.72840 * 19 16 14
21 21 C 1.38031 * 120.11539 * 179.76724 * 20 19 16
22 22 C 1.39303 * 119.87875 * 0.48561 * 21 20 19
23 23 C 1.48467 * 120.11586 * 179.79076 * 22 21 20
24 24 N 1.34038 * 126.67646 * 179.97438 * 23 22 21
25 25 N 1.28987 * 107.27085 * 179.97438 * 24 23 22
26 26 N 1.28727 * 108.94018 * 0.02562 * 25 24 23
27 27 H 0.97007 * 125.33483 * 179.97438 * 26 25 24
28 28 N 1.28865 * 109.31757 * 359.74774 * 26 25 24
29 29 C 1.39294 * 119.76971 * 359.76627 * 22 21 20
30 30 C 1.38029 * 119.88023 * 0.02562 * 29 22 21
31 31 H 1.08998 * 109.47272 * 309.36723 * 1 2 3
32 32 H 1.08992 * 109.47141 * 69.36784 * 1 2 3
33 33 H 1.09004 * 109.46813 * 189.36595 * 1 2 3
34 34 H 1.09008 * 109.47129 * 180.02562 * 3 2 1
35 35 H 1.09004 * 109.47084 * 299.99863 * 3 2 1
36 36 H 1.08999 * 109.47102 * 60.00497 * 3 2 1
37 37 H 0.96991 * 120.00307 * 180.02562 * 7 6 4
38 38 H 1.08999 * 109.47488 * 180.02562 * 12 2 1
39 39 H 1.09007 * 109.46656 * 60.00290 * 12 2 1
40 40 H 0.97008 * 119.99791 * 359.97438 * 13 12 2
41 41 H 0.96693 * 113.99823 * 59.99781 * 18 16 14
42 42 H 1.07993 * 119.94297 * 0.02562 * 20 19 16
43 43 H 1.07997 * 120.05890 * 180.24774 * 21 20 19
44 44 H 1.07997 * 120.06520 * 180.02562 * 29 22 21
45 45 H 1.08005 * 119.94274 * 179.97438 * 30 29 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0324 -0.7103 -1.2305
5 1 2.6353 -1.6010 -1.1316
6 6 1.7223 -0.2233 -2.4825
7 7 1.9157 -0.9724 -3.5461
8 14 1.0275 1.5007 -2.6684
9 1 2.1416 2.4818 -2.7083
10 1 0.2468 1.5866 -3.9287
11 1 0.1417 1.8043 -1.5158
12 6 2.0401 -0.7212 1.2492
13 7 1.5518 -0.0307 2.4454
14 6 1.8820 -0.4879 3.6694
15 8 2.5793 -1.4740 3.7807
16 6 1.3847 0.2261 4.8999
17 1 0.2983 0.3047 4.8603
18 8 1.7671 -0.5088 6.0643
19 6 1.9865 1.6066 4.9572
20 6 3.2763 1.7772 5.4268
21 6 3.8339 3.0389 5.4769
22 6 3.0916 4.1426 5.0630
23 6 3.6845 5.5026 5.1189
24 7 3.0931 6.6493 4.7559
25 7 3.9420 7.5990 4.9591
26 7 5.0289 7.0944 5.4293
27 1 5.8240 7.5969 5.6665
28 7 4.8931 5.8177 5.5400
29 6 1.7913 3.9658 4.5959
30 6 1.2448 2.6992 4.5459
31 1 -0.3634 0.6518 0.7945
32 1 -0.3633 0.3621 -0.9617
33 1 -0.3633 -1.0140 0.1672
34 1 3.1300 1.4426 -0.0005
35 1 1.6766 1.9564 -0.8900
36 1 1.6767 1.9563 0.8900
37 1 1.6979 -0.6297 -4.4269
38 1 3.1301 -0.7208 1.2494
39 1 1.6768 -1.7489 1.2492
40 1 0.9943 0.7582 2.3564
41 1 2.7226 -0.6180 6.1643
42 1 3.8495 0.9213 5.7509
43 1 4.8425 3.1705 5.8399
44 1 1.2116 4.8180 4.2734
45 1 0.2365 2.5610 4.1843
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001589267372.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:22:03
Heat of formation + Delta-G solvation = 50.109710 kcal
Electronic energy + Delta-G solvation = -29975.545400 eV
Core-core repulsion = 25802.642675 eV
Total energy + Delta-G solvation = -4172.902725 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-45.48509 -41.50213 -40.03440 -38.59997 -37.30143 -35.45332 -35.09671 -34.59320
-33.49896 -32.15296 -31.96026 -28.96574 -27.99311 -27.25134 -26.61264 -25.79018
-24.79574 -23.49985 -22.49460 -21.54902 -20.96129 -20.22759 -19.10634 -18.53288
-18.16411 -18.01574 -17.41721 -17.20643 -16.98992 -16.24670 -16.05729 -15.69499
-15.27858 -15.05022 -14.90726 -14.77009 -14.54212 -14.39272 -14.26981 -14.05547
-13.97018 -13.74299 -13.68683 -13.27327 -12.97060 -12.83061 -12.44181 -12.38916
-12.34408 -12.20503 -12.12241 -11.95837 -11.94315 -11.75257 -11.74083 -11.07603
-10.72153 -10.60737 -10.37028 -10.02117 -9.96440 -9.59270 -8.29485 -6.31122
-0.39949 0.13966 0.39450 1.21749 1.37449 1.38761 1.40252 1.51758
1.57188 2.19589 2.35499 2.63982 2.72778 3.07091 3.13671 3.40406
3.50210 3.78477 3.87547 3.99760 4.10184 4.17907 4.26471 4.34394
4.41177 4.42337 4.43420 4.63618 4.76681 4.77459 4.84000 4.88953
4.97053 5.04738 5.08292 5.19111 5.28064 5.38961 5.42717 5.44918
5.55065 5.58774 5.73066 5.82055 5.83054 6.30762 6.41881 6.65058
6.74123 7.09100 7.23012 7.33994 8.87797
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.009643 B = 0.003285 C = 0.002627
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2902.851309 B = 8521.159638 C =10657.435301
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.029 3.971
3 C -0.146 4.146
4 C -0.518 4.518
5 H 0.027 0.973
6 C 0.017 3.983
7 N -0.947 5.947
8 Si 0.942 3.058
9 H -0.285 1.285
10 H -0.316 1.316
11 H -0.198 1.198
12 C 0.156 3.844
13 N -0.701 5.701
14 C 0.483 3.517
15 O -0.580 6.580
16 C 0.146 3.854
17 H 0.163 0.837
18 O -0.539 6.539
19 C -0.102 4.102
20 C -0.113 4.113
21 C -0.078 4.078
22 C -0.028 4.028
23 C 0.209 3.791
24 N -0.291 5.291
25 N -0.057 5.057
26 N -0.201 5.201
27 H 0.494 0.506
28 N -0.297 5.297
29 C -0.075 4.075
30 C -0.101 4.101
31 H 0.071 0.929
32 H 0.044 0.956
33 H 0.042 0.958
34 H 0.042 0.958
35 H 0.034 0.966
36 H 0.075 0.925
37 H 0.264 0.736
38 H 0.041 0.959
39 H 0.042 0.958
40 H 0.412 0.588
41 H 0.390 0.610
42 H 0.139 0.861
43 H 0.142 0.858
44 H 0.148 0.852
45 H 0.168 0.832
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.677 17.331 23.391 29.120
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C 0.028 3.972
3 C -0.203 4.203
4 C -0.556 4.556
5 H 0.045 0.955
6 C -0.181 4.181
7 N -0.587 5.587
8 Si 0.771 3.229
9 H -0.213 1.213
10 H -0.246 1.246
11 H -0.122 1.122
12 C 0.032 3.968
13 N -0.354 5.354
14 C 0.269 3.731
15 O -0.460 6.460
16 C 0.083 3.917
17 H 0.180 0.820
18 O -0.346 6.346
19 C -0.104 4.104
20 C -0.131 4.131
21 C -0.098 4.098
22 C -0.032 4.032
23 C -0.071 4.071
24 N -0.163 5.163
25 N -0.052 5.052
26 N -0.052 5.052
27 H 0.353 0.647
28 N -0.149 5.149
29 C -0.095 4.095
30 C -0.119 4.119
31 H 0.089 0.911
32 H 0.063 0.937
33 H 0.061 0.939
34 H 0.061 0.939
35 H 0.052 0.948
36 H 0.094 0.906
37 H 0.073 0.927
38 H 0.059 0.941
39 H 0.061 0.939
40 H 0.250 0.750
41 H 0.240 0.760
42 H 0.157 0.843
43 H 0.160 0.840
44 H 0.166 0.834
45 H 0.185 0.815
Dipole moment (debyes) X Y Z Total
from point charges 0.539 17.264 23.327 29.026
hybrid contribution 1.326 0.375 -1.009 1.707
sum 1.865 17.640 22.318 28.509
Atomic orbital electron populations
1.22236 0.95825 1.00861 1.01096 1.18642 0.93952 0.92923 0.91709
1.22288 1.00757 0.96910 1.00319 1.21056 1.32839 1.11050 0.90662
0.95502 1.25855 0.95413 1.01553 0.95231 1.70114 1.50810 1.38327
0.99423 0.86383 0.79440 0.79872 0.77177 1.21293 1.24578 1.12185
1.21043 0.97309 0.95081 0.83338 1.46033 1.52592 1.31808 1.05015
1.21960 0.80290 0.84675 0.86187 1.90706 1.39892 1.28231 1.87149
1.20794 1.02234 0.86185 0.82474 0.82016 1.86600 1.30584 1.76218
1.41165 1.20416 0.95295 0.94799 0.99879 1.21004 0.94823 0.97651
0.99656 1.21176 1.00183 0.90940 0.97498 1.17461 0.95174 0.86007
1.04528 1.23884 0.88031 0.95744 0.99422 1.76065 1.23781 0.96632
1.19822 1.78864 0.91886 1.22440 1.12033 1.47795 1.15282 1.03208
1.38921 0.64699 1.74896 1.20166 0.97270 1.22617 1.21326 0.93203
0.98638 0.96314 1.21256 1.01482 0.90395 0.98780 0.91056 0.93692
0.93912 0.93887 0.94774 0.90608 0.92720 0.94051 0.93933 0.74989
0.75953 0.84303 0.84026 0.83424 0.81467
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.11 7.53 71.98 0.54 -4.57 16
2 C 0.03 1.18 0.50 -52.93 -0.03 1.15 16
3 C -0.15 -5.28 7.52 71.98 0.54 -4.74 16
4 C -0.52 -28.17 8.62 25.60 0.22 -27.95 16
5 H 0.03 1.67 7.99 -2.91 -0.02 1.64 16
6 C 0.02 0.94 5.32 84.65 0.45 1.39 16
7 N -0.95 -58.60 13.96 21.44 0.30 -58.30 16
8 Si 0.94 42.16 22.79 68.60 1.56 43.72 16
9 H -0.29 -12.67 7.10 99.48 0.71 -11.96 16
10 H -0.32 -14.67 7.11 99.48 0.71 -13.97 16
11 H -0.20 -7.32 4.65 99.48 0.46 -6.86 16
12 C 0.16 5.94 4.49 86.38 0.39 6.33 16
13 N -0.70 -19.32 4.96 -463.06 -2.30 -21.62 16
14 C 0.48 13.29 7.15 87.66 0.63 13.92 16
15 O -0.58 -21.34 16.32 15.96 0.26 -21.08 16
16 C 0.15 2.70 3.62 29.10 0.11 2.80 16
17 H 0.16 2.07 8.00 -2.39 -0.02 2.05 16
18 O -0.54 -11.15 12.84 -129.99 -1.67 -12.82 16
19 C -0.10 -1.66 4.93 -19.83 -0.10 -1.76 16
20 C -0.11 -1.90 9.30 22.24 0.21 -1.69 16
21 C -0.08 -1.32 9.70 22.48 0.22 -1.11 16
22 C -0.03 -0.52 5.88 -20.04 -0.12 -0.64 16
23 C 0.21 4.13 7.94 137.39 1.09 5.22 16
24 N -0.29 -6.17 12.23 -52.18 -0.64 -6.80 16
25 N -0.06 -1.00 13.47 37.02 0.50 -0.50 16
26 N -0.20 -2.36 7.90 37.02 0.29 -2.07 16
27 H 0.49 0.84 8.96 -347.54 -3.12 -2.28 16
28 N -0.30 -4.97 12.08 -52.13 -0.63 -5.60 16
29 C -0.07 -1.18 9.70 22.47 0.22 -0.96 16
30 C -0.10 -1.35 9.65 22.24 0.21 -1.14 16
31 H 0.07 1.86 7.13 -2.39 -0.02 1.84 16
32 H 0.04 1.72 4.30 -2.39 -0.01 1.71 16
33 H 0.04 1.56 8.12 -2.39 -0.02 1.54 16
34 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16
35 H 0.03 1.30 2.25 -2.38 -0.01 1.29 16
36 H 0.08 2.05 6.86 -2.39 -0.02 2.03 16
37 H 0.26 15.40 8.31 -92.72 -0.77 14.63 16
38 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16
39 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16
40 H 0.41 8.68 6.26 -92.70 -0.58 8.10 16
41 H 0.39 6.72 7.23 -74.06 -0.54 6.18 16
42 H 0.14 2.00 6.76 -2.91 -0.02 1.98 16
43 H 0.14 2.12 7.88 -2.91 -0.02 2.09 16
44 H 0.15 2.08 7.89 -2.91 -0.02 2.05 16
45 H 0.17 1.16 8.03 -2.91 -0.02 1.14 16
Total: -1.00 -79.36 367.66 -1.12 -80.48
By element:
Atomic # 1 Polarization: 21.71 SS G_CDS: -3.38 Total: 18.32 kcal
Atomic # 6 Polarization: -18.31 SS G_CDS: 4.58 Total: -13.73 kcal
Atomic # 7 Polarization: -92.42 SS G_CDS: -2.47 Total: -94.89 kcal
Atomic # 8 Polarization: -32.49 SS G_CDS: -1.41 Total: -33.90 kcal
Atomic # 14 Polarization: 42.16 SS G_CDS: 1.56 Total: 43.72 kcal
Total: -79.36 -1.12 -80.48 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001589267372.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 130.589 kcal
(2) G-P(sol) polarization free energy of solvation -79.356 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.232 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.479 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.110 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds