Wall clock time and date at job start Wed Apr 1 2020 03:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47627 * 2 1 4 4 C 1.53010 * 109.46998 * 239.99424 * 2 1 3 5 5 C 1.50699 * 109.46589 * 60.00721 * 4 2 1 6 6 H 1.07997 * 120.00330 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99475 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00195 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99631 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47457 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47281 * 119.99643 * 9 7 5 12 12 H 1.48494 * 109.47256 * 239.99393 * 9 7 5 13 13 C 1.53003 * 109.46900 * 120.00224 * 2 1 3 14 14 N 1.46505 * 109.46598 * 299.99736 * 13 2 1 15 15 C 1.34777 * 119.99681 * 180.02562 * 14 13 2 16 16 O 1.21570 * 119.99894 * 359.97438 * 15 14 13 17 17 C 1.47754 * 119.99856 * 179.97438 * 15 14 13 18 18 C 1.39722 * 120.00180 * 359.97438 * 17 15 14 19 19 C 1.37671 * 120.08989 * 179.97438 * 18 17 15 20 20 C 1.39418 * 120.09262 * 359.97438 * 19 18 17 21 21 C 1.48307 * 119.99815 * 180.02562 * 20 19 18 22 22 N 1.34100 * 126.68341 * 179.97438 * 21 20 19 23 23 N 1.28972 * 107.26544 * 180.02562 * 22 21 20 24 24 N 1.28725 * 108.96444 * 359.97438 * 23 22 21 25 25 H 0.97000 * 125.33667 * 180.02562 * 24 23 22 26 26 N 1.28874 * 109.33056 * 359.97438 * 24 23 22 27 27 C 1.39881 * 119.99746 * 0.27118 * 20 19 18 28 28 O 1.35867 * 120.04192 * 179.72438 * 27 20 19 29 29 C 1.38272 * 119.91215 * 359.49465 * 27 20 19 30 30 H 1.08996 * 109.47079 * 300.00526 * 1 2 3 31 31 H 1.09005 * 109.46856 * 59.99875 * 1 2 3 32 32 H 1.08990 * 109.47579 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47226 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47105 * 299.99973 * 3 2 1 35 35 H 1.08996 * 109.47321 * 59.99622 * 3 2 1 36 36 H 1.08998 * 109.47023 * 180.02562 * 4 2 1 37 37 H 1.08996 * 109.47013 * 300.00939 * 4 2 1 38 38 H 0.96995 * 120.00067 * 179.97438 * 8 7 5 39 39 H 1.08998 * 109.47147 * 179.97438 * 13 2 1 40 40 H 1.08996 * 109.47174 * 59.99022 * 13 2 1 41 41 H 0.96993 * 120.00241 * 359.97438 * 14 13 2 42 42 H 1.08004 * 119.95271 * 0.02562 * 18 17 15 43 43 H 1.08003 * 119.95022 * 180.02562 * 19 18 17 44 44 H 0.96703 * 113.99268 * 90.00387 * 28 27 20 45 45 H 1.08000 * 120.04652 * 180.24983 * 29 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8704 -0.4824 -3.7320 8 7 2.6264 -1.5517 -3.8526 9 14 1.2473 0.3978 -5.2572 10 1 0.4220 1.5643 -4.8531 11 1 2.4020 0.8643 -6.0661 12 1 0.4221 -0.5357 -6.0651 13 6 2.0400 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8776 -0.4908 3.6695 16 8 2.5764 -1.4792 3.7811 17 6 1.3855 0.2061 4.8759 18 6 0.5827 1.3425 4.7477 19 6 0.1228 1.9930 5.8705 20 6 0.4563 1.5193 7.1386 21 6 -0.0407 2.2213 8.3468 22 7 0.1955 1.8845 9.6231 23 7 -0.4138 2.7454 10.3653 24 7 -1.0144 3.5977 9.6104 25 1 -1.5444 4.3479 9.9224 26 7 -0.8004 3.2989 8.3752 27 6 1.2640 0.3850 7.2714 28 8 1.5942 -0.0741 8.5067 29 6 1.7220 -0.2712 6.1437 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0275 -0.0005 33 1 3.1301 1.4423 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 3.1300 -0.7218 -1.2490 37 1 1.6766 -1.7490 -1.2492 38 1 2.8601 -1.8836 -4.7335 39 1 3.1300 -0.7217 1.2491 40 1 1.6765 -1.7489 1.2493 41 1 0.9943 0.7583 2.3564 42 1 0.3220 1.7106 3.7663 43 1 -0.4979 2.8709 5.7687 44 1 0.9700 -0.7193 8.8663 45 1 2.3424 -1.1496 6.2437 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589272776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:38 Heat of formation + Delta-G solvation = 61.205834 kcal Electronic energy + Delta-G solvation = -28926.805096 eV Core-core repulsion = 24754.383535 eV Total energy + Delta-G solvation = -4172.421561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.84202 -40.58225 -39.25163 -37.24482 -36.75253 -34.75324 -34.04922 -33.70350 -32.16878 -31.12191 -30.20266 -27.24889 -26.65983 -26.55919 -25.20744 -24.94608 -23.13415 -22.78533 -22.24162 -20.54893 -19.76537 -19.04439 -18.04123 -17.54570 -17.18093 -16.68047 -16.46866 -16.12194 -15.39788 -15.23658 -15.03614 -14.52911 -14.42084 -14.14406 -13.87671 -13.70931 -13.29093 -13.15628 -12.86799 -12.78716 -12.50849 -12.20450 -12.09486 -12.04254 -11.74884 -11.61392 -11.33173 -11.18016 -11.05651 -10.99402 -10.86194 -10.68220 -10.45153 -10.27818 -9.99798 -9.92363 -9.30471 -9.22571 -9.05623 -8.94940 -8.78064 -8.38594 -6.02344 -4.03703 -0.00968 0.75044 0.85166 1.76689 1.82174 2.75228 3.16597 3.25998 3.28478 3.36892 3.38858 3.51130 3.74708 3.83911 4.42734 4.45926 4.59790 4.71880 4.81720 4.97619 5.01876 5.24174 5.33251 5.45174 5.49449 5.57512 5.69571 5.77754 5.83255 5.87902 5.96613 6.11220 6.15909 6.20214 6.25708 6.33949 6.47496 6.58679 6.69083 7.01319 7.03597 7.08005 7.32170 7.59572 7.62465 7.73130 7.75324 7.96245 8.25531 8.38080 9.01293 9.59603 11.09075 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024872 B = 0.001879 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.473380 B =14899.090095 C =15825.668502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.712 5.712 15 C 0.548 3.452 16 O -0.535 6.535 17 C -0.088 4.088 18 C -0.100 4.100 19 C -0.070 4.070 20 C -0.032 4.032 21 C 0.218 3.782 22 N -0.248 5.248 23 N -0.053 5.053 24 N -0.228 5.228 25 H 0.476 0.524 26 N -0.291 5.291 27 C 0.145 3.855 28 O -0.476 6.476 29 C -0.091 4.091 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.398 0.602 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.395 0.605 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.136 10.011 25.930 29.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.186 4.186 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C 0.004 3.996 14 N -0.364 5.364 15 C 0.334 3.666 16 O -0.413 6.413 17 C -0.092 4.092 18 C -0.119 4.119 19 C -0.090 4.090 20 C -0.036 4.036 21 C -0.061 4.061 22 N -0.121 5.121 23 N -0.049 5.049 24 N -0.074 5.074 25 H 0.330 0.670 26 N -0.144 5.144 27 C 0.098 3.902 28 O -0.286 6.286 29 C -0.110 4.110 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.235 0.765 42 H 0.156 0.844 43 H 0.161 0.839 44 H 0.253 0.747 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.138 9.645 26.457 29.312 hybrid contribution -1.242 0.989 -1.175 1.975 sum -9.380 10.634 25.282 28.987 Atomic orbital electron populations 1.21775 0.95229 1.01275 1.00253 1.20924 0.95510 0.95898 0.95026 1.21776 1.00682 0.95839 1.00255 1.19097 0.96418 0.95246 0.89415 1.21212 1.31171 1.12084 0.90484 0.92180 1.25021 0.95324 0.95089 0.99125 1.69966 1.36942 1.23007 1.23368 0.86590 0.78599 0.79660 0.83442 1.19807 1.21144 1.21153 1.21714 0.99177 0.96134 0.82561 1.46148 1.52688 1.31797 1.05727 1.18148 0.80895 0.84316 0.83289 1.90799 1.37795 1.25937 1.86749 1.20145 0.98937 0.96245 0.93923 1.21281 0.96874 0.94487 0.99251 1.20991 0.98529 0.99657 0.89822 1.17812 1.00286 0.96877 0.88663 1.23470 0.97017 0.92266 0.93345 1.76261 1.16953 1.18515 1.00352 1.78968 1.06320 0.97974 1.21602 1.47741 1.34757 1.23545 1.01351 0.67013 1.74947 1.19509 1.16970 1.02925 1.18169 0.94034 0.92379 0.85640 1.84859 1.52007 1.63324 1.28426 1.21514 0.99303 1.00364 0.89846 0.95307 0.91326 0.93246 0.93235 0.91322 0.95303 0.96272 0.96279 0.93072 0.91437 0.91440 0.76490 0.84371 0.83877 0.74719 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 2 C -0.07 -1.32 0.54 -154.50 -0.08 -1.40 16 3 C -0.13 -2.13 8.05 37.15 0.30 -1.83 16 4 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.24 7.65 -34.44 -0.26 -13.50 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.13 2.12 4.56 -4.04 -0.02 2.11 16 14 N -0.71 -9.66 4.91 -61.27 -0.30 -9.96 16 15 C 0.55 7.84 7.77 -12.37 -0.10 7.74 16 16 O -0.53 -9.64 16.33 5.30 0.09 -9.56 16 17 C -0.09 -0.98 5.87 -104.95 -0.62 -1.60 16 18 C -0.10 -0.86 9.52 -39.23 -0.37 -1.24 16 19 C -0.07 -0.57 9.67 -39.35 -0.38 -0.95 16 20 C -0.03 -0.30 5.89 -104.70 -0.62 -0.92 16 21 C 0.22 2.11 7.90 -156.27 -1.23 0.88 16 22 N -0.25 -2.54 11.04 32.14 0.35 -2.19 16 23 N -0.05 -0.45 13.47 60.35 0.81 0.36 16 24 N -0.23 -1.28 7.90 60.35 0.48 -0.81 16 25 H 0.48 0.37 8.96 -340.36 -3.05 -2.68 16 26 N -0.29 -2.33 12.07 32.15 0.39 -1.94 16 27 C 0.15 1.43 6.70 -38.95 -0.26 1.16 16 28 O -0.48 -4.37 11.82 -19.32 -0.23 -4.60 16 29 C -0.09 -0.97 9.52 -39.07 -0.37 -1.35 16 30 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 31 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 35 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.40 4.41 4.18 -40.82 -0.17 4.24 16 42 H 0.14 0.92 6.38 -52.48 -0.33 0.58 16 43 H 0.14 0.91 7.87 -52.48 -0.41 0.50 16 44 H 0.40 2.07 9.06 45.56 0.41 2.48 16 45 H 0.15 1.68 7.64 -52.49 -0.40 1.28 16 LS Contribution 376.76 15.07 5.68 5.68 Total: -1.00 -34.36 376.76 -8.27 -42.63 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.33 Total: 0.36 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -3.93 Total: -10.55 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 2.47 Total: -39.80 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.14 Total: -14.16 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.36 -8.27 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589272776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.838 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds