Wall clock time and date at job start Wed Apr 1 2020 03:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47627 * 2 1 4 4 C 1.53010 * 109.46998 * 239.99424 * 2 1 3 5 5 C 1.50699 * 109.46589 * 60.00721 * 4 2 1 6 6 H 1.07997 * 120.00330 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99475 * 180.02562 * 5 4 2 8 8 N 1.31505 * 120.00195 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99631 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47457 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47281 * 119.99643 * 9 7 5 12 12 H 1.48494 * 109.47256 * 239.99393 * 9 7 5 13 13 C 1.53003 * 109.46900 * 120.00224 * 2 1 3 14 14 N 1.46505 * 109.46598 * 299.99736 * 13 2 1 15 15 C 1.34777 * 119.99681 * 180.02562 * 14 13 2 16 16 O 1.21570 * 119.99894 * 359.97438 * 15 14 13 17 17 C 1.47754 * 119.99856 * 179.97438 * 15 14 13 18 18 C 1.39722 * 120.00180 * 359.97438 * 17 15 14 19 19 C 1.37671 * 120.08989 * 179.97438 * 18 17 15 20 20 C 1.39418 * 120.09262 * 359.97438 * 19 18 17 21 21 C 1.48307 * 119.99815 * 180.02562 * 20 19 18 22 22 N 1.34100 * 126.68341 * 179.97438 * 21 20 19 23 23 N 1.28972 * 107.26544 * 180.02562 * 22 21 20 24 24 N 1.28725 * 108.96444 * 359.97438 * 23 22 21 25 25 H 0.97000 * 125.33667 * 180.02562 * 24 23 22 26 26 N 1.28874 * 109.33056 * 359.97438 * 24 23 22 27 27 C 1.39881 * 119.99746 * 0.27118 * 20 19 18 28 28 O 1.35867 * 120.04192 * 179.72438 * 27 20 19 29 29 C 1.38272 * 119.91215 * 359.49465 * 27 20 19 30 30 H 1.08996 * 109.47079 * 300.00526 * 1 2 3 31 31 H 1.09005 * 109.46856 * 59.99875 * 1 2 3 32 32 H 1.08990 * 109.47579 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47226 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47105 * 299.99973 * 3 2 1 35 35 H 1.08996 * 109.47321 * 59.99622 * 3 2 1 36 36 H 1.08998 * 109.47023 * 180.02562 * 4 2 1 37 37 H 1.08996 * 109.47013 * 300.00939 * 4 2 1 38 38 H 0.96995 * 120.00067 * 179.97438 * 8 7 5 39 39 H 1.08998 * 109.47147 * 179.97438 * 13 2 1 40 40 H 1.08996 * 109.47174 * 59.99022 * 13 2 1 41 41 H 0.96993 * 120.00241 * 359.97438 * 14 13 2 42 42 H 1.08004 * 119.95271 * 0.02562 * 18 17 15 43 43 H 1.08003 * 119.95022 * 180.02562 * 19 18 17 44 44 H 0.96703 * 113.99268 * 90.00387 * 28 27 20 45 45 H 1.08000 * 120.04652 * 180.24983 * 29 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8704 -0.4824 -3.7320 8 7 2.6264 -1.5517 -3.8526 9 14 1.2473 0.3978 -5.2572 10 1 0.4220 1.5643 -4.8531 11 1 2.4020 0.8643 -6.0661 12 1 0.4221 -0.5357 -6.0651 13 6 2.0400 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8776 -0.4908 3.6695 16 8 2.5764 -1.4792 3.7811 17 6 1.3855 0.2061 4.8759 18 6 0.5827 1.3425 4.7477 19 6 0.1228 1.9930 5.8705 20 6 0.4563 1.5193 7.1386 21 6 -0.0407 2.2213 8.3468 22 7 0.1955 1.8845 9.6231 23 7 -0.4138 2.7454 10.3653 24 7 -1.0144 3.5977 9.6104 25 1 -1.5444 4.3479 9.9224 26 7 -0.8004 3.2989 8.3752 27 6 1.2640 0.3850 7.2714 28 8 1.5942 -0.0741 8.5067 29 6 1.7220 -0.2712 6.1437 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0275 -0.0005 33 1 3.1301 1.4423 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 3.1300 -0.7218 -1.2490 37 1 1.6766 -1.7490 -1.2492 38 1 2.8601 -1.8836 -4.7335 39 1 3.1300 -0.7217 1.2491 40 1 1.6765 -1.7489 1.2493 41 1 0.9943 0.7583 2.3564 42 1 0.3220 1.7106 3.7663 43 1 -0.4979 2.8709 5.7687 44 1 0.9700 -0.7193 8.8663 45 1 2.3424 -1.1496 6.2437 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589272776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:37 Heat of formation + Delta-G solvation = 35.461354 kcal Electronic energy + Delta-G solvation = -28927.921461 eV Core-core repulsion = 24754.383535 eV Total energy + Delta-G solvation = -4173.537925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.45141 -41.51150 -40.25249 -38.63480 -37.55055 -35.40078 -35.28764 -34.68406 -33.93414 -31.87246 -30.97964 -29.09028 -27.91305 -27.89014 -26.17310 -25.65120 -24.74153 -23.48961 -23.20399 -21.59008 -20.42496 -20.10851 -19.24808 -18.35307 -18.17480 -17.91461 -17.53430 -17.23656 -16.52588 -16.46434 -16.17797 -15.95274 -15.19381 -15.16081 -15.00893 -14.80935 -14.68995 -14.29340 -14.02704 -13.89419 -13.84479 -13.49154 -13.15944 -12.87664 -12.75217 -12.67184 -12.56032 -12.38042 -12.30274 -12.26666 -12.20110 -11.98647 -11.92067 -11.73071 -11.50328 -11.23847 -10.89490 -10.79040 -10.49862 -10.18675 -9.97211 -9.68782 -8.11747 -6.19103 -0.75684 0.13550 0.16718 1.01727 1.41552 1.43528 1.44906 1.56224 1.84702 2.07601 2.46634 2.59635 2.67231 3.08943 3.16550 3.23094 3.60985 3.83495 3.98179 4.06965 4.10968 4.12111 4.24697 4.28277 4.37907 4.56171 4.72766 4.75831 4.81490 4.84268 5.00870 5.07257 5.13234 5.14119 5.16334 5.17421 5.38153 5.47880 5.54467 5.55429 5.58102 5.60931 5.61902 5.84615 5.93275 6.32928 6.52195 6.76737 6.96815 7.13150 7.16180 7.48613 9.00873 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024872 B = 0.001879 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.473380 B =14899.090095 C =15825.668502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.065 4.065 3 C -0.124 4.124 4 C 0.038 3.962 5 C -0.510 4.510 6 H 0.075 0.925 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.255 1.255 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.139 3.861 14 N -0.698 5.698 15 C 0.550 3.450 16 O -0.581 6.581 17 C -0.101 4.101 18 C -0.086 4.086 19 C -0.060 4.060 20 C -0.032 4.032 21 C 0.204 3.796 22 N -0.273 5.273 23 N -0.062 5.062 24 N -0.200 5.200 25 H 0.495 0.505 26 N -0.286 5.286 27 C 0.144 3.856 28 O -0.487 6.487 29 C -0.099 4.099 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.056 0.944 35 H 0.073 0.927 36 H -0.014 1.014 37 H -0.014 1.014 38 H 0.259 0.741 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.414 0.586 42 H 0.166 0.834 43 H 0.169 0.831 44 H 0.410 0.590 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 13.407 27.087 32.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.182 4.182 4 C 0.001 3.999 5 C -0.548 4.548 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.784 3.216 10 H -0.178 1.178 11 H -0.213 1.213 12 H -0.212 1.212 13 C 0.016 3.984 14 N -0.351 5.351 15 C 0.338 3.662 16 O -0.462 6.462 17 C -0.105 4.105 18 C -0.105 4.105 19 C -0.079 4.079 20 C -0.036 4.036 21 C -0.076 4.076 22 N -0.145 5.145 23 N -0.057 5.057 24 N -0.051 5.051 25 H 0.354 0.646 26 N -0.139 5.139 27 C 0.097 3.903 28 O -0.299 6.299 29 C -0.119 4.119 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.004 0.996 37 H 0.005 0.995 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.254 0.746 42 H 0.183 0.817 43 H 0.186 0.814 44 H 0.270 0.730 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.689 13.090 27.650 32.406 hybrid contribution -0.497 -0.030 -1.386 1.472 sum -11.186 13.060 26.264 31.393 Atomic orbital electron populations 1.21724 0.93372 1.01132 1.01888 1.20719 0.96879 0.96342 0.92589 1.21726 0.99991 0.94558 1.01880 1.18987 0.94307 0.94256 0.92372 1.21641 1.30190 1.12024 0.90983 0.90711 1.25961 0.95780 0.95911 1.02776 1.70125 1.38914 1.25025 1.23953 0.85494 0.77981 0.78852 0.79289 1.17842 1.21273 1.21244 1.21295 0.98047 0.95566 0.83542 1.45858 1.52688 1.31987 1.04531 1.18614 0.79873 0.83678 0.84074 1.90781 1.39901 1.28116 1.87375 1.19865 1.00865 0.97605 0.92209 1.21493 0.95287 0.92947 1.00752 1.21229 0.97974 0.99908 0.88838 1.17973 0.99787 0.96467 0.89419 1.23530 0.97824 0.92954 0.93270 1.76248 1.17917 1.19498 1.00838 1.78924 1.06759 0.98363 1.21698 1.47817 1.33463 1.23241 1.00571 0.64624 1.74902 1.18994 1.16313 1.03658 1.18116 0.94173 0.92645 0.85406 1.84817 1.52956 1.63918 1.28258 1.21438 0.99703 1.00360 0.90381 0.90781 0.92470 0.94377 0.94461 0.92448 0.90813 0.99596 0.99533 0.93271 0.93275 0.93145 0.74581 0.81659 0.81394 0.73018 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.83 8.05 71.98 0.58 -3.25 16 2 C -0.06 -2.31 0.54 -52.18 -0.03 -2.34 16 3 C -0.12 -3.87 8.05 71.98 0.58 -3.29 16 4 C 0.04 1.90 4.04 29.85 0.12 2.02 16 5 C -0.51 -26.63 7.65 25.60 0.20 -26.43 16 6 H 0.07 3.62 5.68 -2.91 -0.02 3.60 16 7 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 8 N -0.94 -56.54 13.29 21.45 0.28 -56.25 16 9 Si 0.96 42.91 29.54 68.60 2.03 44.93 16 10 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 13 C 0.14 4.72 4.56 86.38 0.39 5.11 16 14 N -0.70 -17.72 4.91 -466.04 -2.29 -20.01 16 15 C 0.55 15.38 7.77 86.76 0.67 16.05 16 16 O -0.58 -21.60 16.33 -3.94 -0.06 -21.66 16 17 C -0.10 -2.10 5.87 -20.08 -0.12 -2.22 16 18 C -0.09 -1.17 9.52 22.49 0.21 -0.96 16 19 C -0.06 -0.74 9.67 22.42 0.22 -0.53 16 20 C -0.03 -0.54 5.89 -19.92 -0.12 -0.65 16 21 C 0.20 3.47 7.90 137.30 1.08 4.56 16 22 N -0.27 -5.17 11.04 -52.24 -0.58 -5.74 16 23 N -0.06 -0.93 13.47 37.02 0.50 -0.43 16 24 N -0.20 -1.70 7.90 37.02 0.29 -1.41 16 25 H 0.49 -0.75 8.96 -347.53 -3.12 -3.86 16 26 N -0.29 -3.68 12.07 -52.18 -0.63 -4.31 16 27 C 0.14 2.69 6.70 22.68 0.15 2.84 16 28 O -0.49 -8.73 11.82 -92.06 -1.09 -9.82 16 29 C -0.10 -2.10 9.52 22.60 0.22 -1.88 16 30 H 0.07 1.61 6.86 -2.39 -0.02 1.59 16 31 H 0.06 1.91 6.62 -2.38 -0.02 1.90 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.93 6.62 -2.38 -0.02 1.91 16 35 H 0.07 1.62 6.86 -2.39 -0.02 1.61 16 36 H -0.01 -0.80 8.14 -2.39 -0.02 -0.81 16 37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.41 7.52 4.18 -92.71 -0.39 7.14 16 42 H 0.17 1.29 6.38 -2.91 -0.02 1.27 16 43 H 0.17 1.30 7.87 -2.91 -0.02 1.28 16 44 H 0.41 4.18 9.06 -74.06 -0.67 3.51 16 45 H 0.14 3.23 7.64 -2.91 -0.02 3.21 16 Total: -1.00 -77.94 376.76 0.00 -77.94 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -3.08 Total: 7.70 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 4.62 Total: -10.94 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -2.42 Total: -88.16 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -1.15 Total: -31.48 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -77.94 0.00 -77.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589272776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.406 kcal (2) G-P(sol) polarization free energy of solvation -77.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds