Wall clock time and date at job start Wed Apr 1 2020 03:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47340 * 2 1 4 4 C 1.50701 * 109.47364 * 240.00147 * 2 1 3 5 5 H 1.08005 * 120.00077 * 240.00710 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99853 * 4 2 1 7 7 N 1.31508 * 119.99949 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99982 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47192 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47102 * 120.00083 * 8 6 4 11 11 H 1.48500 * 109.47347 * 240.00379 * 8 6 4 12 12 C 1.53005 * 109.47195 * 120.00172 * 2 1 3 13 13 N 1.46503 * 109.46886 * 300.00046 * 12 2 1 14 14 C 1.34772 * 120.00214 * 179.97438 * 13 12 2 15 15 O 1.21288 * 119.99764 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00269 * 179.97438 * 14 13 12 17 17 O 1.42897 * 109.46987 * 179.97438 * 16 14 13 18 18 C 1.35871 * 116.99997 * 180.02562 * 17 16 14 19 19 C 1.38830 * 119.93748 * 180.02562 * 18 17 16 20 20 C 1.37922 * 120.05800 * 179.97438 * 19 18 17 21 21 C 1.39342 * 119.93625 * 0.02562 * 20 19 18 22 22 C 1.48438 * 120.05864 * 179.97438 * 21 20 19 23 23 N 1.34059 * 126.67514 * 0.02562 * 22 21 20 24 24 N 1.28984 * 107.26645 * 179.97438 * 23 22 21 25 25 N 1.28723 * 108.94564 * 359.97438 * 24 23 22 26 26 H 0.97004 * 125.33488 * 179.97438 * 25 24 23 27 27 N 1.28872 * 109.32698 * 359.97438 * 25 24 23 28 28 C 1.39334 * 119.88215 * 0.24816 * 21 20 19 29 29 C 1.37923 * 119.93655 * 359.51453 * 28 21 20 30 30 H 1.09001 * 109.47184 * 299.99956 * 1 2 3 31 31 H 1.09006 * 109.46648 * 59.99761 * 1 2 3 32 32 H 1.08994 * 109.47243 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47226 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.46955 * 299.99953 * 3 2 1 35 35 H 1.09001 * 109.46946 * 59.99898 * 3 2 1 36 36 H 0.97002 * 119.99963 * 179.97438 * 7 6 4 37 37 H 1.08995 * 109.47402 * 180.02562 * 12 2 1 38 38 H 1.09002 * 109.46895 * 59.99580 * 12 2 1 39 39 H 0.97004 * 120.00253 * 0.02562 * 13 12 2 40 40 H 1.09003 * 109.46482 * 60.00544 * 16 14 13 41 41 H 1.08994 * 109.47274 * 300.00078 * 16 14 13 42 42 H 1.07997 * 119.97109 * 359.97438 * 19 18 17 43 43 H 1.07999 * 120.02831 * 180.02562 * 20 19 18 44 44 H 1.07999 * 120.03549 * 179.72676 * 28 21 20 45 45 H 1.07997 * 119.96873 * 180.23241 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1456 -2.2876 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1468 -0.1873 -4.8164 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5741 -1.4775 3.7808 16 6 1.3749 0.2193 4.9000 17 8 1.8502 -0.4551 6.0667 18 6 1.4849 0.0611 7.2693 19 6 1.9129 -0.5455 8.4425 20 6 1.5441 -0.0234 9.6646 21 6 0.7406 1.1137 9.7210 22 6 0.3416 1.6776 11.0349 23 7 0.6757 1.2047 12.2440 24 7 0.1301 1.9769 13.1212 25 7 -0.5241 2.9038 12.5130 26 1 -1.0254 3.6129 12.9453 27 7 -0.4087 2.7420 11.2397 28 6 0.3078 1.7171 8.5421 29 6 0.6837 1.1936 7.3227 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4425 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.7096 1.1618 -3.4844 37 1 3.1300 -0.7209 1.2495 38 1 1.6766 -1.7490 1.2492 39 1 0.9937 0.7578 2.3565 40 1 0.2849 0.2200 4.8999 41 1 1.7390 1.2467 4.9001 42 1 2.5353 -1.4270 8.3980 43 1 1.8777 -0.4954 10.5769 44 1 -0.3186 2.5959 8.5830 45 1 0.3516 1.6630 6.4086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603135024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:08 Heat of formation + Delta-G solvation = 73.769574 kcal Electronic energy + Delta-G solvation = -28244.675971 eV Core-core repulsion = 24072.799214 eV Total energy + Delta-G solvation = -4171.876756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.79437 -40.59154 -39.27039 -37.73554 -36.34914 -34.67231 -33.71022 -33.40920 -31.53883 -31.08248 -30.29825 -28.52260 -25.79357 -25.60328 -25.14267 -24.86530 -24.28348 -22.81687 -21.79340 -20.36259 -19.55364 -18.92169 -18.55047 -17.48645 -17.20489 -16.79743 -16.47581 -16.04661 -15.65968 -15.02149 -14.84768 -14.62322 -14.55511 -14.21205 -13.79212 -13.53596 -13.31091 -13.11866 -12.97301 -12.77419 -12.72532 -12.27629 -12.25121 -11.82464 -11.64478 -11.58396 -11.42525 -11.26259 -11.15284 -10.92516 -10.78028 -10.70110 -10.45293 -10.24747 -9.70631 -9.67145 -9.40014 -9.33964 -8.84111 -8.56838 -8.42044 -8.39340 -6.06988 -4.16994 0.41634 0.85086 0.99936 1.87795 2.02497 2.55900 2.82195 3.24626 3.33557 3.35029 3.38270 3.45840 3.80601 3.85714 4.36461 4.43583 4.57328 4.73755 4.87940 4.92616 4.93896 4.96292 5.09078 5.18535 5.20268 5.28824 5.66508 5.84006 5.93965 6.01209 6.10269 6.12843 6.24895 6.30357 6.43126 6.67873 6.74685 6.83822 6.89681 6.94946 7.05593 7.28612 7.49136 7.64690 7.79125 7.88163 7.95008 8.08140 8.32253 8.51822 8.83802 9.49273 10.94520 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.034954 B = 0.001553 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.860702 B =18030.114127 C =18634.601410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.054 3.946 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.134 3.866 13 N -0.712 5.712 14 C 0.506 3.494 15 O -0.528 6.528 16 C 0.037 3.963 17 O -0.282 6.282 18 C 0.158 3.842 19 C -0.152 4.152 20 C -0.033 4.033 21 C -0.068 4.068 22 C 0.230 3.770 23 N -0.272 5.272 24 N -0.050 5.050 25 N -0.229 5.229 26 H 0.475 0.525 27 N -0.299 5.299 28 C -0.035 4.035 29 C -0.216 4.216 30 H 0.006 0.994 31 H 0.086 0.914 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.086 0.914 35 H 0.006 0.994 36 H 0.260 0.740 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.399 0.601 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.136 0.864 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 7.087 25.941 27.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.012 3.988 13 N -0.364 5.364 14 C 0.289 3.711 15 O -0.405 6.405 16 C -0.042 4.042 17 O -0.193 6.193 18 C 0.111 3.889 19 C -0.170 4.170 20 C -0.054 4.054 21 C -0.072 4.072 22 C -0.049 4.049 23 N -0.145 5.145 24 N -0.046 5.046 25 N -0.075 5.075 26 H 0.329 0.671 27 N -0.151 5.151 28 C -0.055 4.055 29 C -0.235 4.235 30 H 0.025 0.975 31 H 0.105 0.895 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.234 0.766 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.154 0.846 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.481 6.322 26.469 27.579 hybrid contribution -0.509 0.717 -1.145 1.444 sum -4.989 7.038 25.323 26.752 Atomic orbital electron populations 1.21837 0.97667 0.99267 1.00109 1.18394 0.92887 0.92839 0.90525 1.21836 0.98672 0.98261 1.00110 1.21009 1.31489 1.12135 0.89789 0.92313 1.24875 0.94823 0.94916 0.98892 1.69803 1.36698 1.22745 1.23187 0.86510 0.78656 0.79774 0.82926 1.19721 1.21053 1.21048 1.21789 0.98337 0.95863 0.82841 1.46183 1.52806 1.32003 1.05448 1.19883 0.81693 0.85235 0.84247 1.90734 1.37339 1.25854 1.86527 1.22652 1.00495 0.97050 0.83973 1.86202 1.69769 1.52053 1.11309 1.19327 0.92224 0.91623 0.85770 1.20408 1.04745 1.02887 0.88991 1.20968 0.93563 0.92959 0.97870 1.17088 1.04890 0.98748 0.86462 1.23664 0.95794 0.90817 0.94635 1.76087 1.19644 1.21183 0.97571 1.78904 1.05897 0.97099 1.22675 1.47714 1.34559 1.22843 1.02385 0.67086 1.74935 1.21509 1.20259 0.98405 1.20916 0.96136 0.98180 0.90249 1.21238 1.04240 0.98767 0.99209 0.97520 0.89533 0.95350 0.95351 0.89531 0.97521 0.93023 0.92431 0.92431 0.76561 0.88829 0.88815 0.83952 0.83933 0.84643 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 2 C 0.05 1.20 0.50 -155.65 -0.08 1.12 16 3 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 4 C -0.51 -12.86 8.01 -34.44 -0.28 -13.13 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -22.96 9.35 55.43 0.52 -22.44 16 8 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.13 2.70 4.50 -4.04 -0.02 2.68 16 13 N -0.71 -11.57 4.96 -60.29 -0.30 -11.87 16 14 C 0.51 8.19 7.91 -10.99 -0.09 8.10 16 15 O -0.53 -10.96 16.50 -14.36 -0.24 -11.20 16 16 C 0.04 0.42 5.22 36.01 0.19 0.61 16 17 O -0.28 -3.73 9.66 -39.25 -0.38 -4.11 16 18 C 0.16 1.71 6.69 -39.14 -0.26 1.44 16 19 C -0.15 -1.49 9.97 -39.48 -0.39 -1.88 16 20 C -0.03 -0.30 9.70 -39.29 -0.38 -0.68 16 21 C -0.07 -0.64 5.88 -104.88 -0.62 -1.25 16 22 C 0.23 2.23 7.93 -156.30 -1.24 0.99 16 23 N -0.27 -2.80 12.23 32.15 0.39 -2.40 16 24 N -0.05 -0.43 13.47 60.35 0.81 0.38 16 25 N -0.23 -1.32 7.90 60.35 0.48 -0.85 16 26 H 0.48 0.43 8.96 -340.37 -3.05 -2.62 16 27 N -0.30 -2.45 12.08 32.17 0.39 -2.06 16 28 C -0.03 -0.29 9.69 -39.29 -0.38 -0.67 16 29 C -0.22 -1.90 9.02 -39.48 -0.36 -2.25 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 31 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 35 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 36 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.40 5.57 6.16 -40.82 -0.25 5.31 16 40 H 0.09 0.81 7.65 -51.93 -0.40 0.41 16 41 H 0.09 0.81 7.66 -51.93 -0.40 0.41 16 42 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.14 1.10 7.88 -52.49 -0.41 0.69 16 44 H 0.14 0.95 7.88 -52.49 -0.41 0.54 16 45 H 0.14 0.93 6.28 -52.49 -0.33 0.60 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -32.09 378.35 -9.29 -41.38 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.25 Total: 0.49 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -3.39 Total: -8.33 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 2.29 Total: -39.24 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.62 Total: -15.31 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.09 -9.29 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603135024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.153 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds