Wall clock time and date at job start Wed Apr 1 2020 03:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47340 * 2 1 4 4 C 1.50701 * 109.47364 * 240.00147 * 2 1 3 5 5 H 1.08005 * 120.00077 * 240.00710 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99853 * 4 2 1 7 7 N 1.31508 * 119.99949 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99982 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47192 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47102 * 120.00083 * 8 6 4 11 11 H 1.48500 * 109.47347 * 240.00379 * 8 6 4 12 12 C 1.53005 * 109.47195 * 120.00172 * 2 1 3 13 13 N 1.46503 * 109.46886 * 300.00046 * 12 2 1 14 14 C 1.34772 * 120.00214 * 179.97438 * 13 12 2 15 15 O 1.21288 * 119.99764 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00269 * 179.97438 * 14 13 12 17 17 O 1.42897 * 109.46987 * 179.97438 * 16 14 13 18 18 C 1.35871 * 116.99997 * 180.02562 * 17 16 14 19 19 C 1.38830 * 119.93748 * 180.02562 * 18 17 16 20 20 C 1.37922 * 120.05800 * 179.97438 * 19 18 17 21 21 C 1.39342 * 119.93625 * 0.02562 * 20 19 18 22 22 C 1.48438 * 120.05864 * 179.97438 * 21 20 19 23 23 N 1.34059 * 126.67514 * 0.02562 * 22 21 20 24 24 N 1.28984 * 107.26645 * 179.97438 * 23 22 21 25 25 N 1.28723 * 108.94564 * 359.97438 * 24 23 22 26 26 H 0.97004 * 125.33488 * 179.97438 * 25 24 23 27 27 N 1.28872 * 109.32698 * 359.97438 * 25 24 23 28 28 C 1.39334 * 119.88215 * 0.24816 * 21 20 19 29 29 C 1.37923 * 119.93655 * 359.51453 * 28 21 20 30 30 H 1.09001 * 109.47184 * 299.99956 * 1 2 3 31 31 H 1.09006 * 109.46648 * 59.99761 * 1 2 3 32 32 H 1.08994 * 109.47243 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47226 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.46955 * 299.99953 * 3 2 1 35 35 H 1.09001 * 109.46946 * 59.99898 * 3 2 1 36 36 H 0.97002 * 119.99963 * 179.97438 * 7 6 4 37 37 H 1.08995 * 109.47402 * 180.02562 * 12 2 1 38 38 H 1.09002 * 109.46895 * 59.99580 * 12 2 1 39 39 H 0.97004 * 120.00253 * 0.02562 * 13 12 2 40 40 H 1.09003 * 109.46482 * 60.00544 * 16 14 13 41 41 H 1.08994 * 109.47274 * 300.00078 * 16 14 13 42 42 H 1.07997 * 119.97109 * 359.97438 * 19 18 17 43 43 H 1.07999 * 120.02831 * 180.02562 * 20 19 18 44 44 H 1.07999 * 120.03549 * 179.72676 * 28 21 20 45 45 H 1.07997 * 119.96873 * 180.23241 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1456 -2.2876 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1468 -0.1873 -4.8164 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5741 -1.4775 3.7808 16 6 1.3749 0.2193 4.9000 17 8 1.8502 -0.4551 6.0667 18 6 1.4849 0.0611 7.2693 19 6 1.9129 -0.5455 8.4425 20 6 1.5441 -0.0234 9.6646 21 6 0.7406 1.1137 9.7210 22 6 0.3416 1.6776 11.0349 23 7 0.6757 1.2047 12.2440 24 7 0.1301 1.9769 13.1212 25 7 -0.5241 2.9038 12.5130 26 1 -1.0254 3.6129 12.9453 27 7 -0.4087 2.7420 11.2397 28 6 0.3078 1.7171 8.5421 29 6 0.6837 1.1936 7.3227 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4425 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.7096 1.1618 -3.4844 37 1 3.1300 -0.7209 1.2495 38 1 1.6766 -1.7490 1.2492 39 1 0.9937 0.7578 2.3565 40 1 0.2849 0.2200 4.8999 41 1 1.7390 1.2467 4.9001 42 1 2.5353 -1.4270 8.3980 43 1 1.8777 -0.4954 10.5769 44 1 -0.3186 2.5959 8.5830 45 1 0.3516 1.6630 6.4086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603135024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:07 Heat of formation + Delta-G solvation = 53.122178 kcal Electronic energy + Delta-G solvation = -28245.571309 eV Core-core repulsion = 24072.799214 eV Total energy + Delta-G solvation = -4172.772094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.41601 -41.46766 -40.47147 -38.65315 -37.93969 -35.30842 -35.03635 -34.36607 -32.86488 -32.15516 -31.08336 -29.53825 -27.52476 -27.37790 -26.39978 -25.76599 -25.06627 -23.57121 -22.50988 -21.61924 -20.61713 -20.15981 -19.36074 -18.47871 -18.10161 -17.70601 -17.48207 -17.40568 -16.86102 -16.57654 -16.05971 -15.84936 -15.55328 -14.99820 -14.79883 -14.74551 -14.55630 -14.38357 -13.98396 -13.83184 -13.78558 -13.61152 -13.18222 -13.07814 -12.93611 -12.69941 -12.56830 -12.52438 -12.31061 -12.24781 -12.22037 -12.12532 -11.83495 -11.47378 -11.45938 -11.26824 -10.87565 -10.66024 -10.38594 -10.05531 -9.98698 -9.13872 -8.01492 -6.16426 -0.24821 0.21121 0.34441 1.32663 1.41706 1.46221 1.46717 1.54487 1.57928 1.60668 2.45832 2.69121 2.77811 2.78118 3.20245 3.22552 3.62394 3.85612 3.98095 4.08231 4.15806 4.21974 4.26819 4.43556 4.45514 4.51318 4.53320 4.63074 4.74568 5.01748 5.03890 5.09317 5.12413 5.17245 5.22950 5.28151 5.36124 5.42865 5.57785 5.63348 5.65012 5.69781 5.70730 6.19391 6.24240 6.28368 6.45700 6.62957 6.87887 7.15626 7.26092 7.51319 8.97327 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.034954 B = 0.001553 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.860702 B =18030.114127 C =18634.601410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.048 3.952 3 C -0.121 4.121 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.942 3.058 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.149 3.851 13 N -0.702 5.702 14 C 0.504 3.496 15 O -0.581 6.581 16 C 0.044 3.956 17 O -0.313 6.313 18 C 0.140 3.860 19 C -0.161 4.161 20 C -0.035 4.035 21 C -0.074 4.074 22 C 0.217 3.783 23 N -0.298 5.298 24 N -0.059 5.059 25 N -0.202 5.202 26 H 0.494 0.506 27 N -0.298 5.298 28 C -0.033 4.033 29 C -0.208 4.208 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.260 0.740 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.414 0.586 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.397 9.030 27.281 29.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.048 3.952 3 C -0.179 4.179 4 C -0.566 4.566 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.769 3.231 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.026 3.974 13 N -0.356 5.356 14 C 0.291 3.709 15 O -0.461 6.461 16 C -0.034 4.034 17 O -0.225 6.225 18 C 0.093 3.907 19 C -0.180 4.180 20 C -0.055 4.055 21 C -0.078 4.078 22 C -0.062 4.062 23 N -0.170 5.170 24 N -0.054 5.054 25 N -0.053 5.053 26 H 0.353 0.647 27 N -0.150 5.150 28 C -0.053 4.053 29 C -0.226 4.226 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.252 0.748 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.159 0.841 43 H 0.166 0.834 44 H 0.171 0.829 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.886 8.308 27.839 29.642 hybrid contribution -0.114 0.159 -1.457 1.470 sum -5.999 8.467 26.382 28.349 Atomic orbital electron populations 1.21676 0.96822 0.98746 1.00665 1.18404 0.93502 0.93198 0.90127 1.21676 0.97937 0.97630 1.00666 1.21301 1.31578 1.12093 0.91630 0.93902 1.25403 0.95194 0.95602 1.00825 1.69899 1.37009 1.23200 1.23499 0.85758 0.78116 0.78755 0.80464 1.20157 1.20797 1.20786 1.21289 0.97109 0.95122 0.83901 1.45930 1.52863 1.32173 1.04618 1.20745 0.80353 0.84498 0.85347 1.90715 1.39694 1.28376 1.87313 1.22699 1.02275 0.97283 0.81147 1.86146 1.70788 1.53296 1.12311 1.19475 0.93515 0.92759 0.84922 1.20511 1.05035 1.03133 0.89330 1.21021 0.93582 0.93083 0.97788 1.17266 1.04813 0.98792 0.86908 1.23767 0.96413 0.91364 0.94666 1.76070 1.20697 1.22190 0.98037 1.78851 1.06379 0.97591 1.22585 1.47784 1.33253 1.22435 1.01778 0.64719 1.74892 1.21166 1.19755 0.99217 1.21117 0.95944 0.98485 0.89745 1.21470 1.03079 0.97750 1.00336 0.93837 0.91975 0.96368 0.96370 0.91972 0.93838 0.93053 0.94272 0.94272 0.74787 0.85311 0.85302 0.84099 0.83365 0.82902 0.81801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.08 71.98 0.58 -4.46 16 2 C 0.05 2.12 0.50 -52.92 -0.03 2.10 16 3 C -0.12 -5.05 8.08 71.98 0.58 -4.46 16 4 C -0.53 -27.20 8.01 25.60 0.21 -26.99 16 5 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 6 C 0.03 1.53 5.15 84.66 0.44 1.96 16 7 N -0.90 -46.50 9.35 21.45 0.20 -46.30 16 8 Si 0.94 41.96 29.54 68.60 2.03 43.99 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.15 6.03 4.50 86.38 0.39 6.41 16 13 N -0.70 -21.46 4.96 -463.05 -2.30 -23.76 16 14 C 0.50 15.54 7.91 87.66 0.69 16.23 16 15 O -0.58 -24.28 16.50 15.98 0.26 -24.01 16 16 C 0.04 0.85 5.22 71.24 0.37 1.22 16 17 O -0.31 -7.77 9.66 -73.07 -0.71 -8.48 16 18 C 0.14 2.77 6.69 22.55 0.15 2.92 16 19 C -0.16 -3.08 9.97 22.34 0.22 -2.86 16 20 C -0.03 -0.60 9.70 22.46 0.22 -0.38 16 21 C -0.07 -1.27 5.88 -20.03 -0.12 -1.39 16 22 C 0.22 3.88 7.93 137.37 1.09 4.97 16 23 N -0.30 -5.83 12.23 -52.19 -0.64 -6.47 16 24 N -0.06 -0.92 13.47 37.02 0.50 -0.42 16 25 N -0.20 -1.90 7.90 37.02 0.29 -1.61 16 26 H 0.49 -0.32 8.96 -347.54 -3.12 -3.43 16 27 N -0.30 -4.21 12.08 -52.14 -0.63 -4.84 16 28 C -0.03 -0.46 9.69 22.46 0.22 -0.25 16 29 C -0.21 -2.98 9.02 22.34 0.20 -2.78 16 30 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 31 H 0.06 2.92 6.07 -2.38 -0.01 2.91 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 2.92 6.07 -2.39 -0.01 2.91 16 35 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 36 H 0.26 12.98 8.31 -92.71 -0.77 12.21 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.41 10.04 6.16 -92.71 -0.57 9.47 16 40 H 0.13 1.62 7.65 -2.39 -0.02 1.61 16 41 H 0.13 1.63 7.66 -2.39 -0.02 1.61 16 42 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 43 H 0.15 2.28 7.88 -2.91 -0.02 2.25 16 44 H 0.15 1.60 7.88 -2.91 -0.02 1.58 16 45 H 0.16 1.40 6.28 -2.91 -0.02 1.38 16 Total: -1.00 -71.32 378.35 1.60 -69.72 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -2.62 Total: 9.95 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 5.21 Total: -7.76 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.57 Total: -83.40 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.44 Total: -32.49 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -71.32 1.60 -69.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603135024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.841 kcal (2) G-P(sol) polarization free energy of solvation -71.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds