Wall clock time and date at job start Wed Apr 1 2020 03:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47177 * 2 1 4 4 C 1.52994 * 109.47032 * 240.00020 * 2 1 3 5 5 C 1.50706 * 109.47213 * 59.99952 * 4 2 1 6 6 H 1.07995 * 120.00120 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00143 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00059 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99689 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47183 * 90.00070 * 9 7 5 11 11 H 1.48500 * 109.46786 * 209.99735 * 9 7 5 12 12 H 1.48498 * 109.47257 * 329.99943 * 9 7 5 13 13 C 1.52994 * 109.47333 * 119.99813 * 2 1 3 14 14 O 1.45203 * 109.47208 * 300.00043 * 13 2 1 15 15 C 1.34234 * 116.99916 * 179.97438 * 14 13 2 16 16 O 1.20826 * 119.99785 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99834 * 180.02562 * 15 14 13 18 18 C 1.50697 * 109.47020 * 180.02562 * 17 15 14 19 19 C 1.38776 * 120.32111 * 89.99871 * 18 17 15 20 20 C 1.38414 * 118.50605 * 179.97438 * 19 18 17 21 21 C 1.39291 * 119.07280 * 0.02562 * 20 19 18 22 22 C 1.48429 * 119.72777 * 179.97438 * 21 20 19 23 23 N 1.34064 * 126.67199 * 0.02947 * 22 21 20 24 24 N 1.28990 * 107.26616 * 179.97438 * 23 22 21 25 25 N 1.28733 * 108.94492 * 359.97438 * 24 23 22 26 26 H 0.96995 * 125.33767 * 180.02562 * 25 24 23 27 27 N 1.28871 * 109.32168 * 0.02562 * 25 24 23 28 28 N 1.32631 * 120.55042 * 0.27398 * 21 20 19 29 29 C 1.31763 * 121.61926 * 359.43546 * 28 21 20 30 30 H 1.09000 * 109.46739 * 299.99947 * 1 2 3 31 31 H 1.09000 * 109.47057 * 59.99696 * 1 2 3 32 32 H 1.08994 * 109.46918 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47461 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47036 * 300.00341 * 3 2 1 35 35 H 1.08998 * 109.47055 * 59.99849 * 3 2 1 36 36 H 1.09006 * 109.47481 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.47339 * 299.99914 * 4 2 1 38 38 H 0.97005 * 119.99785 * 179.97438 * 8 7 5 39 39 H 1.08999 * 109.47465 * 180.02562 * 13 2 1 40 40 H 1.08998 * 109.46922 * 59.99747 * 13 2 1 41 41 H 1.09001 * 109.46888 * 59.99602 * 17 15 14 42 42 H 1.08999 * 109.46789 * 300.00093 * 17 15 14 43 43 H 1.07995 * 120.74299 * 359.95483 * 19 18 17 44 44 H 1.08001 * 120.46409 * 179.97438 * 20 19 18 45 45 H 1.07997 * 119.55502 * 180.26617 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 1.4323 0.1381 -4.8058 9 14 2.9451 -2.0003 -3.9033 10 1 2.0865 -3.2111 -3.9494 11 1 3.7374 -1.9075 -5.1559 12 1 3.8650 -2.0898 -2.7411 13 6 2.0401 -0.7212 1.2492 14 8 1.5561 -0.0367 2.4348 15 6 1.9164 -0.5470 3.6229 16 8 2.6135 -1.5328 3.6706 17 6 1.4514 0.1095 4.8972 18 6 1.9904 -0.6524 6.0804 19 6 3.2188 -0.3146 6.6307 20 6 3.6775 -1.0390 7.7173 21 6 2.8950 -2.0769 8.2179 22 6 3.3732 -2.8636 9.3822 23 7 4.5243 -2.6904 10.0472 24 7 4.5600 -3.5730 10.9872 25 7 3.4869 -4.2823 10.9354 26 1 3.2686 -5.0140 11.5336 27 7 2.7482 -3.8678 9.9642 28 7 1.7288 -2.3719 7.6592 29 6 1.2661 -1.6950 6.6278 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.1300 -0.7209 -1.2495 37 1 1.6767 -1.7489 -1.2492 38 1 1.6673 -0.1929 -5.6868 39 1 3.1301 -0.7208 1.2494 40 1 1.6767 -1.7488 1.2492 41 1 0.3619 0.1088 4.9297 42 1 1.8152 1.1365 4.9305 43 1 3.8037 0.4951 6.2202 44 1 4.6293 -0.8034 8.1700 45 1 0.3101 -1.9611 6.2016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603139113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:46 Heat of formation + Delta-G solvation = 61.428375 kcal Electronic energy + Delta-G solvation = -28482.075683 eV Core-core repulsion = 24309.663773 eV Total energy + Delta-G solvation = -4172.411911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.88844 -40.95926 -40.08813 -37.42779 -35.58142 -35.02200 -34.46576 -33.22676 -32.35417 -32.21811 -29.13609 -27.91763 -26.48964 -26.48587 -25.38782 -24.72398 -23.63807 -22.78741 -22.16357 -20.69888 -19.73621 -18.28044 -17.64565 -17.57067 -17.54997 -17.06327 -16.89201 -16.22544 -16.11682 -15.38925 -14.61411 -14.38483 -14.24470 -14.12978 -14.03938 -13.76582 -13.55199 -13.13765 -13.02086 -12.79717 -12.44011 -12.37872 -12.26238 -12.10034 -11.82078 -11.57214 -11.39606 -11.38366 -11.09049 -11.01089 -10.63346 -10.60791 -10.45185 -10.39278 -10.22905 -9.97437 -9.88746 -9.76973 -9.57518 -9.21818 -9.02515 -8.56143 -6.06441 -4.04013 0.10787 0.72786 0.86515 1.78876 1.79636 2.20265 2.76396 2.97625 3.28982 3.37215 3.40284 3.47410 3.61323 4.10129 4.30877 4.42894 4.44332 4.57387 4.61158 4.77474 4.87501 5.04573 5.08113 5.17990 5.24935 5.34040 5.34657 5.37892 5.59460 5.65926 5.75617 5.90470 5.92626 6.05528 6.15355 6.22875 6.44646 6.51125 6.63576 6.68275 6.91576 7.03324 7.05814 7.17250 7.31559 7.40345 7.71715 7.72609 7.81900 8.50637 8.97873 9.55600 11.06133 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.001738 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.363128 B =16104.525314 C =16671.983590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.050 4.050 3 C -0.127 4.127 4 C -0.003 4.003 5 C -0.510 4.510 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.874 3.126 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.077 3.923 14 O -0.347 6.347 15 C 0.456 3.544 16 O -0.507 6.507 17 C -0.074 4.074 18 C -0.106 4.106 19 C -0.058 4.058 20 C -0.122 4.122 21 C 0.195 3.805 22 C 0.221 3.779 23 N -0.260 5.260 24 N -0.049 5.049 25 N -0.228 5.228 26 H 0.477 0.523 27 N -0.260 5.260 28 N -0.451 5.451 29 C 0.123 3.877 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.018 0.982 37 H 0.013 0.987 38 H 0.263 0.737 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.146 0.854 44 H 0.150 0.850 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 -2.379 31.278 31.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.050 4.050 3 C -0.184 4.184 4 C -0.041 4.041 5 C -0.548 4.548 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.191 1.191 13 C 0.004 3.996 14 O -0.263 6.263 15 C 0.299 3.701 16 O -0.395 6.395 17 C -0.112 4.112 18 C -0.109 4.109 19 C -0.083 4.083 20 C -0.144 4.144 21 C 0.056 3.944 22 C -0.060 4.060 23 N -0.134 5.134 24 N -0.044 5.044 25 N -0.074 5.074 26 H 0.332 0.668 27 N -0.112 5.112 28 N -0.160 5.160 29 C -0.036 4.036 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.164 0.836 44 H 0.168 0.832 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.431 -3.548 31.873 32.101 hybrid contribution 0.754 -0.809 -0.674 1.295 sum 2.185 -4.357 31.199 31.577 Atomic orbital electron populations 1.21732 0.94303 1.01027 1.01411 1.20591 0.96529 0.96260 0.91621 1.21727 0.99911 0.95399 1.01404 1.19627 0.96292 0.95548 0.92584 1.21034 1.31924 1.13459 0.88408 0.90205 1.24988 0.95693 0.96725 0.95966 1.69897 1.45777 1.40522 0.97878 0.86873 0.81328 0.83969 0.77680 1.20334 1.21404 1.19098 1.23522 0.98897 0.95923 0.81220 1.86485 1.69362 1.55728 1.14718 1.23340 0.78018 0.82778 0.85990 1.90703 1.35248 1.25446 1.88113 1.20248 1.04042 1.00372 0.86531 1.20525 0.95940 0.97695 0.96780 1.21468 0.94241 0.98745 0.93881 1.21967 1.00972 0.94824 0.96634 1.17702 0.91831 0.93087 0.91738 1.23173 0.89989 0.94587 0.98241 1.76083 1.17688 1.16488 1.03146 1.78934 1.07643 1.01271 1.16540 1.47861 1.11044 1.26418 1.22099 0.66828 1.75158 1.21025 1.13573 1.01429 1.67473 1.12206 1.26935 1.09392 1.22609 0.99656 0.90299 0.90999 0.93926 0.90999 0.93819 0.93828 0.91001 0.93930 0.96395 0.96839 0.92741 0.91608 0.91589 0.86004 0.86124 0.83605 0.83200 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.08 37.16 0.30 -1.98 16 2 C -0.05 -0.93 0.61 -154.51 -0.09 -1.03 16 3 C -0.13 -2.27 8.08 37.16 0.30 -1.97 16 4 C 0.00 -0.07 3.11 -27.88 -0.09 -0.16 16 5 C -0.51 -13.64 8.20 -34.44 -0.28 -13.92 16 6 H 0.08 2.26 5.92 -52.49 -0.31 1.95 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 9 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 13 C 0.08 1.29 4.32 37.15 0.16 1.45 16 14 O -0.35 -4.89 8.88 -39.27 -0.35 -5.24 16 15 C 0.46 5.65 7.95 36.01 0.29 5.94 16 16 O -0.51 -8.00 15.78 -18.75 -0.30 -8.30 16 17 C -0.07 -0.54 5.96 -29.03 -0.17 -0.72 16 18 C -0.11 -0.91 4.40 -104.42 -0.46 -1.37 16 19 C -0.06 -0.46 9.85 -39.32 -0.39 -0.85 16 20 C -0.12 -1.08 9.74 -39.13 -0.38 -1.46 16 21 C 0.20 2.12 6.75 -82.93 -0.56 1.56 16 22 C 0.22 2.39 8.03 -156.30 -1.26 1.13 16 23 N -0.26 -2.71 12.21 32.15 0.39 -2.32 16 24 N -0.05 -0.42 13.47 60.35 0.81 0.39 16 25 N -0.23 -1.44 7.90 60.35 0.48 -0.96 16 26 H 0.48 0.62 8.96 -340.37 -3.05 -2.43 16 27 N -0.26 -2.52 12.38 32.17 0.40 -2.12 16 28 N -0.45 -5.14 10.29 -9.77 -0.10 -5.24 16 29 C 0.12 1.17 10.85 -17.58 -0.19 0.98 16 30 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 31 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 35 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 36 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 37 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 40 H 0.07 1.11 8.13 -51.93 -0.42 0.68 16 41 H 0.12 0.61 8.09 -51.93 -0.42 0.19 16 42 H 0.12 0.60 8.09 -51.93 -0.42 0.18 16 43 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.15 1.08 7.88 -52.49 -0.41 0.67 16 45 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -35.23 383.79 -8.27 -43.50 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -8.57 Total: -5.39 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.92 Total: -10.58 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 2.75 Total: -36.45 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.64 Total: -13.54 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.23 -8.27 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603139113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.929 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds