Wall clock time and date at job start Wed Apr 1 2020 03:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47177 * 2 1 4 4 C 1.52994 * 109.47032 * 240.00020 * 2 1 3 5 5 C 1.50706 * 109.47213 * 59.99952 * 4 2 1 6 6 H 1.07995 * 120.00120 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00143 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00059 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99689 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47183 * 90.00070 * 9 7 5 11 11 H 1.48500 * 109.46786 * 209.99735 * 9 7 5 12 12 H 1.48498 * 109.47257 * 329.99943 * 9 7 5 13 13 C 1.52994 * 109.47333 * 119.99813 * 2 1 3 14 14 O 1.45203 * 109.47208 * 300.00043 * 13 2 1 15 15 C 1.34234 * 116.99916 * 179.97438 * 14 13 2 16 16 O 1.20826 * 119.99785 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99834 * 180.02562 * 15 14 13 18 18 C 1.50697 * 109.47020 * 180.02562 * 17 15 14 19 19 C 1.38776 * 120.32111 * 89.99871 * 18 17 15 20 20 C 1.38414 * 118.50605 * 179.97438 * 19 18 17 21 21 C 1.39291 * 119.07280 * 0.02562 * 20 19 18 22 22 C 1.48429 * 119.72777 * 179.97438 * 21 20 19 23 23 N 1.34064 * 126.67199 * 0.02947 * 22 21 20 24 24 N 1.28990 * 107.26616 * 179.97438 * 23 22 21 25 25 N 1.28733 * 108.94492 * 359.97438 * 24 23 22 26 26 H 0.96995 * 125.33767 * 180.02562 * 25 24 23 27 27 N 1.28871 * 109.32168 * 0.02562 * 25 24 23 28 28 N 1.32631 * 120.55042 * 0.27398 * 21 20 19 29 29 C 1.31763 * 121.61926 * 359.43546 * 28 21 20 30 30 H 1.09000 * 109.46739 * 299.99947 * 1 2 3 31 31 H 1.09000 * 109.47057 * 59.99696 * 1 2 3 32 32 H 1.08994 * 109.46918 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47461 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47036 * 300.00341 * 3 2 1 35 35 H 1.08998 * 109.47055 * 59.99849 * 3 2 1 36 36 H 1.09006 * 109.47481 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.47339 * 299.99914 * 4 2 1 38 38 H 0.97005 * 119.99785 * 179.97438 * 8 7 5 39 39 H 1.08999 * 109.47465 * 180.02562 * 13 2 1 40 40 H 1.08998 * 109.46922 * 59.99747 * 13 2 1 41 41 H 1.09001 * 109.46888 * 59.99602 * 17 15 14 42 42 H 1.08999 * 109.46789 * 300.00093 * 17 15 14 43 43 H 1.07995 * 120.74299 * 359.95483 * 19 18 17 44 44 H 1.08001 * 120.46409 * 179.97438 * 20 19 18 45 45 H 1.07997 * 119.55502 * 180.26617 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 1.4323 0.1381 -4.8058 9 14 2.9451 -2.0003 -3.9033 10 1 2.0865 -3.2111 -3.9494 11 1 3.7374 -1.9075 -5.1559 12 1 3.8650 -2.0898 -2.7411 13 6 2.0401 -0.7212 1.2492 14 8 1.5561 -0.0367 2.4348 15 6 1.9164 -0.5470 3.6229 16 8 2.6135 -1.5328 3.6706 17 6 1.4514 0.1095 4.8972 18 6 1.9904 -0.6524 6.0804 19 6 3.2188 -0.3146 6.6307 20 6 3.6775 -1.0390 7.7173 21 6 2.8950 -2.0769 8.2179 22 6 3.3732 -2.8636 9.3822 23 7 4.5243 -2.6904 10.0472 24 7 4.5600 -3.5730 10.9872 25 7 3.4869 -4.2823 10.9354 26 1 3.2686 -5.0140 11.5336 27 7 2.7482 -3.8678 9.9642 28 7 1.7288 -2.3719 7.6592 29 6 1.2661 -1.6950 6.6278 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.1300 -0.7209 -1.2495 37 1 1.6767 -1.7489 -1.2492 38 1 1.6673 -0.1929 -5.6868 39 1 3.1301 -0.7208 1.2494 40 1 1.6767 -1.7488 1.2492 41 1 0.3619 0.1088 4.9297 42 1 1.8152 1.1365 4.9305 43 1 3.8037 0.4951 6.2202 44 1 4.6293 -0.8034 8.1700 45 1 0.3101 -1.9611 6.2016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603139113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:45 Heat of formation + Delta-G solvation = 38.229078 kcal Electronic energy + Delta-G solvation = -28483.081680 eV Core-core repulsion = 24309.663773 eV Total energy + Delta-G solvation = -4173.417908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.55673 -41.78212 -40.98301 -38.77167 -36.87358 -35.70916 -35.15579 -34.39359 -33.90342 -32.89481 -30.15480 -29.53237 -27.93596 -27.73469 -26.06609 -25.51686 -24.55381 -24.16836 -23.04583 -21.64469 -20.35964 -19.80636 -18.90255 -18.61832 -18.24602 -18.20237 -17.80771 -17.22913 -17.13255 -16.29282 -16.00770 -15.48387 -15.39738 -15.23814 -15.05342 -14.84740 -14.51271 -14.26326 -14.16747 -14.12889 -13.63599 -13.52746 -13.24286 -12.99072 -12.84935 -12.73370 -12.63203 -12.49756 -12.27735 -12.25923 -12.12470 -12.07720 -11.82957 -11.75429 -11.57093 -11.30524 -11.18421 -10.92613 -10.86468 -10.71068 -10.63962 -9.89189 -8.22560 -6.23194 -0.57233 0.06895 0.24026 1.05988 1.27398 1.32303 1.35570 1.38180 1.47732 1.81336 2.32759 2.38350 2.77577 2.94643 3.12367 3.47929 3.69790 3.82363 3.88029 3.94783 3.97211 3.97388 4.02319 4.16752 4.22475 4.40564 4.53163 4.58293 4.61788 4.70712 4.71211 4.76724 4.99095 5.01764 5.04017 5.15379 5.15671 5.30260 5.40337 5.43765 5.50204 5.54459 5.56974 5.61119 5.68093 5.77889 6.37618 6.73620 6.80213 6.84468 7.03516 7.39178 8.92955 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023340 B = 0.001738 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.363128 B =16104.525314 C =16671.983590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.050 4.050 3 C -0.121 4.121 4 C -0.004 4.004 5 C -0.503 4.503 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.949 5.949 9 Si 0.934 3.066 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.251 1.251 13 C 0.088 3.912 14 O -0.345 6.345 15 C 0.458 3.542 16 O -0.544 6.544 17 C -0.062 4.062 18 C -0.109 4.109 19 C -0.057 4.057 20 C -0.124 4.124 21 C 0.174 3.826 22 C 0.207 3.793 23 N -0.278 5.278 24 N -0.051 5.051 25 N -0.200 5.200 26 H 0.496 0.504 27 N -0.275 5.275 28 N -0.479 5.479 29 C 0.112 3.888 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.017 0.983 37 H 0.015 0.985 38 H 0.263 0.737 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.173 0.827 44 H 0.161 0.839 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 -2.441 33.444 33.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.050 4.050 3 C -0.178 4.178 4 C -0.041 4.041 5 C -0.541 4.541 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.759 3.241 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.175 1.175 13 C 0.014 3.986 14 O -0.260 6.260 15 C 0.302 3.698 16 O -0.434 6.434 17 C -0.100 4.100 18 C -0.112 4.112 19 C -0.082 4.082 20 C -0.146 4.146 21 C 0.036 3.964 22 C -0.073 4.073 23 N -0.151 5.151 24 N -0.046 5.046 25 N -0.051 5.051 26 H 0.355 0.645 27 N -0.128 5.128 28 N -0.189 5.189 29 C -0.047 4.047 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.170 0.830 42 H 0.172 0.828 43 H 0.191 0.809 44 H 0.179 0.821 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.772 -3.618 34.090 34.327 hybrid contribution 0.594 -0.771 -1.241 1.577 sum 2.366 -4.389 32.849 33.225 Atomic orbital electron populations 1.21657 0.93736 1.01101 1.01383 1.20461 0.96975 0.96437 0.91159 1.21652 0.99962 0.94828 1.01384 1.19581 0.96068 0.95540 0.92953 1.21322 1.30399 1.12400 0.90008 0.93004 1.25832 0.97435 0.99919 0.95837 1.70040 1.47962 1.42637 0.98440 0.85900 0.79857 0.80338 0.78001 1.19667 1.21388 1.17495 1.23088 0.98554 0.95406 0.81541 1.86473 1.69405 1.55468 1.14703 1.24301 0.76883 0.82212 0.86367 1.90705 1.37064 1.27276 1.88364 1.20414 1.05834 1.01001 0.82717 1.20681 0.96036 0.97468 0.97034 1.21850 0.94203 0.98958 0.93206 1.22154 1.01208 0.94385 0.96899 1.17939 0.92286 0.93977 0.92204 1.23357 0.90262 0.95035 0.98690 1.76057 1.17981 1.17344 1.03733 1.78860 1.08136 1.01359 1.16275 1.47887 1.09908 1.26058 1.21283 0.64499 1.75106 1.21696 1.13784 1.02231 1.67439 1.12870 1.28066 1.10489 1.22998 1.00511 0.90467 0.90711 0.91041 0.93842 0.93704 0.93665 0.93855 0.91022 0.96500 0.96708 0.92805 0.91864 0.91917 0.82951 0.82793 0.80936 0.82125 0.80163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 8.08 71.98 0.58 -3.60 16 2 C -0.05 -1.80 0.61 -52.18 -0.03 -1.84 16 3 C -0.12 -4.14 8.08 71.98 0.58 -3.56 16 4 C 0.00 -0.18 3.11 29.85 0.09 -0.08 16 5 C -0.50 -27.30 8.20 25.60 0.21 -27.09 16 6 H 0.05 3.05 5.92 -2.91 -0.02 3.03 16 7 C 0.01 0.35 5.47 84.65 0.46 0.82 16 8 N -0.95 -58.27 13.96 21.45 0.30 -57.97 16 9 Si 0.93 43.96 27.47 68.60 1.88 45.84 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 13 C 0.09 2.71 4.32 71.98 0.31 3.02 16 14 O -0.34 -8.50 8.88 -51.46 -0.46 -8.96 16 15 C 0.46 9.78 7.95 71.24 0.57 10.35 16 16 O -0.54 -15.95 15.78 21.96 0.35 -15.60 16 17 C -0.06 -0.64 5.96 29.10 0.17 -0.47 16 18 C -0.11 -1.55 4.40 -19.73 -0.09 -1.64 16 19 C -0.06 -0.76 9.85 22.44 0.22 -0.54 16 20 C -0.12 -2.04 9.74 22.57 0.22 -1.82 16 21 C 0.17 3.68 6.75 41.99 0.28 3.97 16 22 C 0.21 4.43 8.03 137.36 1.10 5.53 16 23 N -0.28 -5.67 12.21 -52.19 -0.64 -6.31 16 24 N -0.05 -0.85 13.47 37.02 0.50 -0.35 16 25 N -0.20 -2.35 7.90 37.02 0.29 -2.06 16 26 H 0.50 0.68 8.96 -347.54 -3.12 -2.44 16 27 N -0.28 -5.21 12.38 -52.14 -0.65 -5.85 16 28 N -0.48 -10.58 10.29 -184.82 -1.90 -12.48 16 29 C 0.11 1.92 10.85 84.71 0.92 2.84 16 30 H 0.07 2.02 7.68 -2.39 -0.02 2.00 16 31 H 0.04 1.72 6.62 -2.39 -0.02 1.71 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.71 6.62 -2.38 -0.02 1.70 16 35 H 0.07 2.01 7.68 -2.39 -0.02 1.99 16 36 H 0.02 0.75 7.20 -2.38 -0.02 0.74 16 37 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 38 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 39 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 40 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 41 H 0.15 0.73 8.09 -2.39 -0.02 0.71 16 42 H 0.15 0.66 8.09 -2.39 -0.02 0.64 16 43 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 44 H 0.16 2.14 7.88 -2.91 -0.02 2.12 16 45 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -78.26 383.79 3.16 -75.10 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -2.13 Total: 2.73 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 5.61 Total: -14.09 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -2.09 Total: -85.02 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.11 Total: -24.56 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Total: -78.26 3.16 -75.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603139113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.328 kcal (2) G-P(sol) polarization free energy of solvation -78.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds