Wall clock time and date at job start Wed Apr 1 2020 04:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47594 * 2 1 4 4 N 1.46503 * 109.47447 * 120.00176 * 2 1 3 5 5 N 1.39827 * 125.39271 * 300.02730 * 4 2 1 6 6 C 1.30242 * 110.09460 * 179.97438 * 5 4 2 7 7 C 1.45871 * 107.67816 * 359.97438 * 6 5 4 8 8 C 1.40007 * 134.16036 * 180.02562 * 7 6 5 9 9 C 1.38542 * 118.00618 * 180.02562 * 8 7 6 10 10 N 1.40204 * 120.32230 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00014 * 33.35122 * 10 9 8 12 12 O 1.21589 * 120.00120 * 5.35146 * 11 10 9 13 13 N 1.34776 * 120.00113 * 185.34707 * 11 10 9 14 14 C 1.47576 * 134.49471 * 180.02562 * 13 11 10 15 15 C 1.53939 * 86.11882 * 155.35780 * 14 13 11 16 16 O 1.42898 * 113.74547 * 269.15151 * 15 14 13 17 17 C 1.50706 * 113.74416 * 137.95178 * 15 14 13 18 18 H 1.07994 * 119.99698 * 5.48561 * 17 15 14 19 19 C 1.37873 * 120.00310 * 185.49098 * 17 15 14 20 20 N 1.31520 * 119.99901 * 13.43546 * 19 17 15 21 21 Si 1.86795 * 120.00310 * 193.43689 * 19 17 15 22 22 H 1.48502 * 109.47408 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.47154 * 300.00334 * 21 19 17 24 24 H 1.48508 * 109.46825 * 59.99918 * 21 19 17 25 25 C 1.47587 * 134.49074 * 359.97438 * 13 11 10 26 26 C 1.39409 * 119.35626 * 0.26945 * 9 8 7 27 27 N 1.31440 * 121.48237 * 359.40664 * 26 9 8 28 28 C 1.32733 * 121.72381 * 0.62684 * 27 26 9 29 29 H 1.09005 * 109.47095 * 300.00188 * 1 2 3 30 30 H 1.09001 * 109.47042 * 59.99907 * 1 2 3 31 31 H 1.08992 * 109.47581 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47095 * 239.99812 * 2 1 3 33 33 H 1.08995 * 109.47158 * 59.99757 * 3 2 1 34 34 H 1.09004 * 109.47330 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47002 * 300.00118 * 3 2 1 36 36 H 1.07999 * 126.15912 * 180.02562 * 6 5 4 37 37 H 1.08000 * 120.99712 * 359.97438 * 8 7 6 38 38 H 0.96999 * 119.99676 * 213.35844 * 10 9 8 39 39 H 1.08999 * 113.77217 * 41.05628 * 14 13 11 40 40 H 1.09005 * 113.76824 * 269.65810 * 14 13 11 41 41 H 0.96698 * 114.00752 * 172.49723 * 16 15 14 42 42 H 0.97001 * 119.99877 * 356.09431 * 20 19 17 43 43 H 1.08999 * 113.76188 * 90.33862 * 25 13 11 44 44 H 1.09000 * 113.77294 * 318.94893 * 25 13 11 45 45 H 1.07994 * 119.25779 * 179.73135 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 7 1.7506 -0.3129 2.5155 6 6 2.3311 -1.1344 3.3428 7 6 3.0380 -2.1347 2.5507 8 6 3.8251 -3.2493 2.8645 9 6 4.3498 -3.9905 1.8183 10 7 5.1443 -5.1164 2.0771 11 6 4.8972 -5.8812 3.1589 12 8 3.9276 -5.6530 3.8562 13 7 5.7248 -6.8991 3.4679 14 6 5.7636 -7.9113 4.5411 15 6 6.5747 -8.7726 3.5561 16 8 5.7704 -9.6329 2.7468 17 6 7.7412 -9.4849 4.1911 18 1 7.8877 -9.4346 5.2599 19 6 8.6214 -10.2006 3.4076 20 7 8.6083 -10.0527 2.1008 21 14 9.8325 -11.3802 4.2020 22 1 10.6610 -12.0220 3.1499 23 1 10.7109 -10.6324 5.1370 24 1 9.0877 -12.4244 4.9505 25 6 6.9558 -7.4497 2.8681 26 6 4.0845 -3.6030 0.5057 27 7 3.3372 -2.5556 0.2369 28 6 2.8094 -1.8093 1.1994 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.2948 -1.0845 4.4210 37 1 4.0181 -3.5226 3.8914 38 1 5.8718 -5.3447 1.4775 39 1 4.7870 -8.3278 4.7878 40 1 6.3284 -7.5988 5.4195 41 1 6.2612 -10.0902 2.0504 42 1 7.9425 -9.4838 1.6837 43 1 7.8712 -7.0013 3.2545 44 1 6.9308 -7.4976 1.7795 45 1 4.4979 -4.1794 -0.3086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649891941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:46 Heat of formation + Delta-G solvation = 67.564543 kcal Electronic energy + Delta-G solvation = -29476.579831 eV Core-core repulsion = 25304.434005 eV Total energy + Delta-G solvation = -4172.145826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.70209 -40.23482 -38.81181 -37.63018 -35.76207 -34.67164 -34.40626 -32.43757 -31.93192 -30.41931 -29.40553 -27.75938 -27.60995 -25.62837 -24.95994 -24.27802 -23.27640 -22.55055 -20.73422 -20.04841 -19.25013 -18.37887 -18.10164 -17.80274 -16.86460 -16.36926 -15.72794 -15.53956 -15.38949 -15.24090 -14.77855 -14.51479 -14.17451 -14.08330 -13.95368 -13.69294 -13.52149 -13.12501 -13.02617 -12.72740 -12.71093 -12.46456 -12.43221 -12.21496 -11.71572 -11.69764 -11.69625 -11.22144 -11.02982 -11.01002 -10.99019 -10.64380 -10.27038 -10.11761 -9.89417 -9.42199 -9.40018 -9.05686 -8.91660 -8.51065 -8.08792 -7.69240 -6.77021 -4.55366 0.66156 1.18833 1.96503 2.33393 2.69492 3.26266 3.31042 3.35220 3.48213 3.77184 3.92653 4.03667 4.19985 4.26339 4.50286 4.59359 4.62246 4.75696 4.78031 4.80197 4.98708 5.19586 5.19724 5.22709 5.28513 5.39926 5.44724 5.57967 5.59568 5.79548 5.81427 5.83876 5.97963 6.01541 6.06477 6.16483 6.23443 6.29706 6.31814 6.63752 6.68462 6.84052 7.31757 7.34325 7.56189 7.77093 8.02567 8.32490 8.38803 8.74398 8.79545 9.15761 10.56013 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.032402 B = 0.002001 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.949826 B =13987.998211 C =14326.094071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.166 3.834 3 C -0.160 4.160 4 N -0.390 5.390 5 N -0.237 5.237 6 C 0.082 3.918 7 C -0.205 4.205 8 C -0.001 4.001 9 C 0.084 3.916 10 N -0.681 5.681 11 C 0.723 3.277 12 O -0.591 6.591 13 N -0.648 5.648 14 C 0.145 3.855 15 C 0.217 3.783 16 O -0.566 6.566 17 C -0.617 4.617 18 H 0.066 0.934 19 C 0.034 3.966 20 N -0.895 5.895 21 Si 1.072 2.928 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.283 1.283 25 C 0.070 3.930 26 C 0.150 3.850 27 N -0.487 5.487 28 C 0.293 3.707 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.200 0.800 37 H 0.153 0.847 38 H 0.408 0.592 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.374 0.626 42 H 0.266 0.734 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.007 17.542 -4.221 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.064 3.936 3 C -0.218 4.218 4 N -0.183 5.183 5 N -0.049 5.049 6 C -0.116 4.116 7 C -0.215 4.215 8 C -0.033 4.033 9 C -0.015 4.015 10 N -0.329 5.329 11 C 0.426 3.574 12 O -0.470 6.470 13 N -0.385 5.385 14 C 0.023 3.977 15 C 0.175 3.825 16 O -0.374 6.374 17 C -0.655 4.655 18 H 0.085 0.915 19 C -0.172 4.172 20 N -0.532 5.532 21 Si 0.898 3.102 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.053 4.053 26 C -0.021 4.021 27 N -0.201 5.201 28 C 0.055 3.945 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.216 0.784 37 H 0.170 0.830 38 H 0.244 0.756 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.223 0.777 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.047 18.425 -4.782 21.076 hybrid contribution 0.221 -0.172 0.483 0.558 sum -8.826 18.253 -4.299 20.725 Atomic orbital electron populations 1.22147 0.93706 1.02888 1.03151 1.21249 0.95072 0.93485 0.83773 1.22143 1.01753 0.94756 1.03159 1.48366 1.43548 1.22092 1.04308 1.76581 1.19540 1.21672 0.87095 1.25013 0.95238 0.91535 0.99853 1.20390 1.06978 1.00512 0.93657 1.21038 0.92670 0.89024 1.00561 1.18153 0.99478 0.89890 0.93993 1.42419 1.35299 1.26439 1.28723 1.15457 0.82702 0.78330 0.80877 1.90874 1.30200 1.72668 1.53288 1.49330 1.26777 1.30488 1.31935 1.23240 1.00246 0.83176 0.91071 1.20131 0.88869 0.85839 0.87613 1.86276 1.39592 1.62200 1.49283 1.22215 1.11137 1.35653 0.96501 0.91550 1.26016 0.98971 0.96969 0.95267 1.71008 1.33907 1.37940 1.10345 0.83486 0.75422 0.75954 0.75311 1.20571 1.21102 1.20958 1.24465 0.86128 0.96189 0.98493 1.22477 0.93029 0.92318 0.94286 1.66632 1.12095 1.06736 1.34636 1.18948 0.94638 0.90484 0.90443 0.91277 0.90771 0.92174 0.87638 0.91285 0.92213 0.90778 0.78362 0.82961 0.75608 0.90871 0.89250 0.77653 0.92206 0.89423 0.91872 0.81572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.44 37.15 0.35 -0.95 16 2 C 0.17 1.57 3.67 -67.93 -0.25 1.33 16 3 C -0.16 -1.25 9.44 37.16 0.35 -0.89 16 4 N -0.39 -4.88 3.32 -53.91 -0.18 -5.06 16 5 N -0.24 -2.93 12.21 31.85 0.39 -2.54 16 6 C 0.08 0.96 12.29 -15.17 -0.19 0.78 16 7 C -0.20 -2.86 6.37 -105.19 -0.67 -3.53 16 8 C 0.00 -0.02 8.81 -38.81 -0.34 -0.36 16 9 C 0.08 1.22 6.30 -83.48 -0.53 0.69 16 10 N -0.68 -10.22 5.36 -14.11 -0.08 -10.30 16 11 C 0.72 13.72 8.52 -86.92 -0.74 12.98 16 12 O -0.59 -12.75 14.81 5.29 0.08 -12.67 16 13 N -0.65 -12.61 3.61 -184.12 -0.66 -13.27 16 14 C 0.14 2.97 8.23 -2.98 -0.02 2.94 16 15 C 0.22 4.82 1.07 -90.87 -0.10 4.73 16 16 O -0.57 -13.29 13.45 -35.23 -0.47 -13.77 16 17 C -0.62 -14.92 8.56 -34.44 -0.29 -15.21 16 18 H 0.07 1.59 7.85 -52.49 -0.41 1.18 16 19 C 0.03 0.82 5.26 -17.82 -0.09 0.73 16 20 N -0.90 -22.57 13.08 55.43 0.72 -21.85 16 21 Si 1.07 22.00 29.92 -169.99 -5.09 16.91 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 25 C 0.07 1.36 7.01 -2.99 -0.02 1.34 16 26 C 0.15 1.91 11.08 -17.28 -0.19 1.72 16 27 N -0.49 -6.74 10.37 -12.18 -0.13 -6.87 16 28 C 0.29 4.15 7.92 -155.98 -1.24 2.92 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.11 0.99 8.05 -51.93 -0.42 0.57 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.15 2.39 6.52 -52.49 -0.34 2.05 16 38 H 0.41 5.18 8.44 -40.82 -0.34 4.83 16 39 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 41 H 0.37 8.54 6.78 45.56 0.31 8.85 16 42 H 0.27 6.45 5.22 -40.82 -0.21 6.24 16 43 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 44 H 0.06 1.16 7.86 -51.93 -0.41 0.75 16 45 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -30.52 381.43 -8.91 -39.43 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -5.27 Total: 15.05 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -3.97 Total: 9.19 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.07 Total: -59.90 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.40 Total: -26.43 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.09 Total: 16.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.52 -8.91 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649891941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.993 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds