Wall clock time and date at job start Wed Apr 1 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21555 * 120.00518 * 0.02562 * 8 7 6 10 10 C 1.47763 * 119.99446 * 179.97438 * 8 7 6 11 11 C 1.40600 * 120.26993 * 359.72926 * 10 8 7 12 12 N 1.30798 * 121.53697 * 179.71312 * 11 10 8 13 13 C 1.33822 * 121.72848 * 0.54834 * 12 11 10 14 14 C 1.40544 * 120.79277 * 179.72261 * 13 12 11 15 15 C 1.36098 * 119.84638 * 180.02562 * 14 13 12 16 16 C 1.39559 * 121.06229 * 359.97438 * 15 14 13 17 17 F 1.35098 * 119.60679 * 180.02562 * 16 15 14 18 18 C 1.36348 * 120.78105 * 0.02562 * 16 15 14 19 19 C 1.40510 * 119.60223 * 359.96020 * 18 16 15 20 20 C 1.39001 * 120.26548 * 180.02562 * 10 8 7 21 21 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 22 22 C 1.36935 * 120.00239 * 84.99640 * 21 4 2 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22 28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22 29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22 30 30 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 31 31 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 32 32 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 34 34 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 36 36 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 37 37 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 38 38 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 39 39 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 40 40 H 1.07993 * 119.23046 * 359.97438 * 11 10 8 41 41 H 1.07995 * 120.07231 * 0.04205 * 14 13 12 42 42 H 1.07998 * 119.46725 * 180.02562 * 15 14 13 43 43 H 1.07997 * 120.19648 * 179.97438 * 18 16 15 44 44 H 1.07999 * 121.02227 * 0.02562 * 20 10 8 45 45 H 0.97004 * 119.99747 * 265.00379 * 21 4 2 46 46 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0424 -4.7526 1.8257 10 6 2.3949 -4.9154 3.7234 11 6 3.2833 -4.2657 4.5984 12 7 3.8152 -4.8871 5.6190 13 6 3.5502 -6.1734 5.8759 14 6 4.1373 -6.8234 6.9750 15 6 3.8546 -8.1324 7.2180 16 6 2.9864 -8.8470 6.3915 17 9 2.7261 -10.1451 6.6604 18 6 2.3977 -8.2506 5.3160 19 6 2.6679 -6.9002 5.0370 20 6 2.0806 -6.2525 3.9366 21 7 3.5050 -0.7207 1.2495 22 6 4.1892 0.3542 1.7510 23 1 3.6488 1.2015 2.1466 24 6 5.5773 0.3549 1.7508 25 7 6.2358 -0.6800 1.2736 26 14 6.5107 1.8210 2.4355 27 1 7.9708 1.5730 2.3266 28 1 6.1563 3.0384 1.6624 29 1 6.1470 2.0171 3.8618 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 0.4437 -2.1651 1.3387 38 1 1.8184 -2.6510 0.3178 39 1 2.7227 -2.4348 2.9848 40 1 3.5289 -3.2283 4.4262 41 1 4.8111 -6.2854 7.6253 42 1 4.3089 -8.6257 8.0645 43 1 1.7276 -8.8126 4.6824 44 1 1.4054 -6.7775 3.2773 45 1 3.9903 -1.4819 0.8944 46 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715693427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:04 Heat of formation + Delta-G solvation = -23.402903 kcal Electronic energy + Delta-G solvation = -29329.753554 eV Core-core repulsion = 25133.743122 eV Total energy + Delta-G solvation = -4196.010433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.28674 -41.19243 -39.50338 -37.49189 -36.91774 -34.18409 -33.75579 -33.48617 -31.23187 -30.21760 -30.09063 -28.05119 -26.19793 -25.06593 -24.21473 -23.50913 -22.64786 -22.11555 -20.90825 -19.60071 -18.76821 -18.10830 -17.88974 -17.44802 -16.83984 -16.02861 -15.96495 -15.40100 -15.33700 -14.95889 -14.84640 -14.55257 -14.25622 -14.04378 -13.95009 -13.69150 -13.57534 -13.47733 -13.38189 -13.01058 -12.92902 -12.30933 -12.03686 -11.74516 -11.71111 -11.70028 -11.27757 -11.00321 -10.86435 -10.82185 -10.53226 -10.23675 -10.18869 -10.10835 -9.93502 -9.61100 -9.25799 -9.15662 -8.97216 -8.81535 -8.60633 -7.15423 -6.16537 -3.19333 -0.14975 0.22485 1.48302 2.18682 3.07339 3.20671 3.47725 3.49409 3.67403 3.78323 3.79768 3.90884 4.15492 4.36967 4.45745 4.53694 4.59119 4.66048 4.82486 5.07196 5.20038 5.24434 5.28994 5.42932 5.44663 5.50873 5.53523 5.66334 5.67580 5.71076 5.74424 5.81581 5.87493 6.04776 6.10971 6.12465 6.25438 6.32250 6.36973 6.41343 6.51213 6.52792 6.74164 6.95197 7.22651 7.56349 7.65282 7.73871 8.25349 8.66722 9.10403 9.97417 10.11835 11.30036 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.002689 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.904766 B =10409.344032 C =12326.016214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.174 3.826 5 H 0.056 0.944 6 C 0.112 3.888 7 N -0.704 5.704 8 C 0.559 3.441 9 O -0.545 6.545 10 C -0.177 4.177 11 C 0.169 3.831 12 N -0.466 5.466 13 C 0.131 3.869 14 C -0.061 4.061 15 C -0.128 4.128 16 C 0.098 3.902 17 F -0.137 7.137 18 C -0.124 4.124 19 C -0.091 4.091 20 C 0.006 3.994 21 N -0.733 5.733 22 C -0.330 4.330 23 H 0.068 0.932 24 C -0.040 4.040 25 N -0.939 5.939 26 Si 1.074 2.926 27 H -0.286 1.286 28 H -0.296 1.296 29 H -0.295 1.295 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.031 0.969 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.410 0.590 40 H 0.170 0.830 41 H 0.150 0.850 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.156 0.844 45 H 0.368 0.632 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 -11.579 8.775 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.196 4.196 4 C 0.064 3.936 5 H 0.074 0.926 6 C -0.013 4.013 7 N -0.356 5.356 8 C 0.345 3.655 9 O -0.424 6.424 10 C -0.182 4.182 11 C -0.005 4.005 12 N -0.173 5.173 13 C 0.009 3.991 14 C -0.080 4.080 15 C -0.148 4.148 16 C 0.079 3.921 17 F -0.115 7.115 18 C -0.144 4.144 19 C -0.094 4.094 20 C -0.020 4.020 21 N -0.376 5.376 22 C -0.460 4.460 23 H 0.086 0.914 24 C -0.239 4.239 25 N -0.584 5.584 26 Si 0.905 3.095 27 H -0.211 1.211 28 H -0.223 1.223 29 H -0.222 1.222 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.247 0.753 40 H 0.187 0.813 41 H 0.168 0.832 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.173 0.827 45 H 0.201 0.799 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.609 -10.814 9.272 16.149 hybrid contribution -1.736 -1.170 -0.788 2.237 sum -9.345 -11.983 8.484 17.404 Atomic orbital electron populations 1.21946 0.96739 1.00964 1.01075 1.21713 0.93634 0.97934 0.99760 1.21811 1.04278 0.94446 0.99026 1.20499 0.85875 0.90894 0.96323 0.92589 1.21840 0.97625 0.93298 0.88492 1.45939 1.48181 1.10480 1.30972 1.17917 0.81349 0.82105 0.84178 1.90756 1.36585 1.68009 1.47096 1.21087 1.02236 0.95837 0.99081 1.23273 0.89234 1.00216 0.87787 1.68012 1.22824 1.07986 1.18479 1.19091 0.94651 0.90354 0.94967 1.20756 0.98350 0.93301 0.95572 1.20965 0.98555 0.94846 1.00447 1.17345 0.99072 0.79087 0.96576 1.91527 1.92727 1.33723 1.93548 1.20960 1.01559 0.94155 0.97731 1.18506 0.99494 0.94344 0.97018 1.21892 0.94027 0.92735 0.93368 1.42483 0.99372 1.20987 1.74726 1.19968 0.91542 0.97367 1.37163 0.91427 1.25686 0.93414 1.03658 1.01117 1.70901 1.37391 1.07022 1.43100 0.83313 0.76452 0.74186 0.75520 1.21147 1.22308 1.22219 0.93104 0.93453 0.93062 0.92045 0.89442 0.94988 0.94008 0.91097 0.91643 0.75276 0.81305 0.83204 0.83743 0.83638 0.82672 0.79889 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.84 37.16 0.33 -1.68 16 2 C -0.11 -1.78 2.69 -90.62 -0.24 -2.02 16 3 C -0.14 -2.43 8.26 37.16 0.31 -2.12 16 4 C 0.17 3.04 2.18 -67.93 -0.15 2.89 16 5 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 6 C 0.11 1.76 4.73 -4.04 -0.02 1.74 16 7 N -0.70 -10.85 5.34 -61.28 -0.33 -11.17 16 8 C 0.56 8.72 7.77 -12.37 -0.10 8.62 16 9 O -0.55 -9.79 16.38 5.32 0.09 -9.71 16 10 C -0.18 -2.42 5.89 -104.83 -0.62 -3.04 16 11 C 0.17 2.30 10.68 -17.10 -0.18 2.11 16 12 N -0.47 -6.48 10.30 -10.67 -0.11 -6.59 16 13 C 0.13 1.62 6.61 -84.77 -0.56 1.06 16 14 C -0.06 -0.59 9.97 -39.48 -0.39 -0.99 16 15 C -0.13 -1.06 9.92 -39.86 -0.40 -1.45 16 16 C 0.10 0.92 7.24 -39.77 -0.29 0.63 16 17 F -0.14 -1.31 17.25 2.25 0.04 -1.28 16 18 C -0.12 -1.19 9.73 -39.41 -0.38 -1.57 16 19 C -0.09 -1.05 5.74 -106.82 -0.61 -1.66 16 20 C 0.01 0.08 9.46 -38.43 -0.36 -0.28 16 21 N -0.73 -15.72 4.44 -53.43 -0.24 -15.95 16 22 C -0.33 -8.07 7.57 -15.06 -0.11 -8.18 16 23 H 0.07 1.65 7.40 -52.48 -0.39 1.26 16 24 C -0.04 -1.07 5.50 -17.43 -0.10 -1.16 16 25 N -0.94 -26.97 13.70 55.49 0.76 -26.21 16 26 Si 1.07 24.33 29.92 -169.99 -5.09 19.24 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 28 H -0.30 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.65 6.55 -51.93 -0.34 0.31 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.84 6.01 -51.93 -0.31 1.53 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.05 6.71 -51.92 -0.35 0.70 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.41 6.30 6.16 -40.82 -0.25 6.05 16 40 H 0.17 2.19 6.37 -52.49 -0.33 1.86 16 41 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.16 1.68 7.70 -52.49 -0.40 1.28 16 45 H 0.37 8.46 6.63 -40.82 -0.27 8.19 16 46 H 0.26 7.24 6.77 -40.82 -0.28 6.96 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -29.83 382.83 -8.93 -38.76 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -5.95 Total: 14.25 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -3.88 Total: -7.11 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.09 Total: -59.93 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.09 Total: 19.24 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.83 -8.93 -38.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715693427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.353 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds