Wall clock time and date at job start Wed Apr 1 2020 03:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21555 * 120.00518 * 0.02562 * 8 7 6 10 10 C 1.47763 * 119.99446 * 179.97438 * 8 7 6 11 11 C 1.40600 * 120.26993 * 359.72926 * 10 8 7 12 12 N 1.30798 * 121.53697 * 179.71312 * 11 10 8 13 13 C 1.33822 * 121.72848 * 0.54834 * 12 11 10 14 14 C 1.40544 * 120.79277 * 179.72261 * 13 12 11 15 15 C 1.36098 * 119.84638 * 180.02562 * 14 13 12 16 16 C 1.39559 * 121.06229 * 359.97438 * 15 14 13 17 17 F 1.35098 * 119.60679 * 180.02562 * 16 15 14 18 18 C 1.36348 * 120.78105 * 0.02562 * 16 15 14 19 19 C 1.40510 * 119.60223 * 359.96020 * 18 16 15 20 20 C 1.39001 * 120.26548 * 180.02562 * 10 8 7 21 21 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 22 22 C 1.36935 * 120.00239 * 84.99640 * 21 4 2 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22 28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22 29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22 30 30 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 31 31 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 32 32 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 34 34 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 36 36 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 37 37 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 38 38 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 39 39 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 40 40 H 1.07993 * 119.23046 * 359.97438 * 11 10 8 41 41 H 1.07995 * 120.07231 * 0.04205 * 14 13 12 42 42 H 1.07998 * 119.46725 * 180.02562 * 15 14 13 43 43 H 1.07997 * 120.19648 * 179.97438 * 18 16 15 44 44 H 1.07999 * 121.02227 * 0.02562 * 20 10 8 45 45 H 0.97004 * 119.99747 * 265.00379 * 21 4 2 46 46 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0424 -4.7526 1.8257 10 6 2.3949 -4.9154 3.7234 11 6 3.2833 -4.2657 4.5984 12 7 3.8152 -4.8871 5.6190 13 6 3.5502 -6.1734 5.8759 14 6 4.1373 -6.8234 6.9750 15 6 3.8546 -8.1324 7.2180 16 6 2.9864 -8.8470 6.3915 17 9 2.7261 -10.1451 6.6604 18 6 2.3977 -8.2506 5.3160 19 6 2.6679 -6.9002 5.0370 20 6 2.0806 -6.2525 3.9366 21 7 3.5050 -0.7207 1.2495 22 6 4.1892 0.3542 1.7510 23 1 3.6488 1.2015 2.1466 24 6 5.5773 0.3549 1.7508 25 7 6.2358 -0.6800 1.2736 26 14 6.5107 1.8210 2.4355 27 1 7.9708 1.5730 2.3266 28 1 6.1563 3.0384 1.6624 29 1 6.1470 2.0171 3.8618 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 0.4437 -2.1651 1.3387 38 1 1.8184 -2.6510 0.3178 39 1 2.7227 -2.4348 2.9848 40 1 3.5289 -3.2283 4.4262 41 1 4.8111 -6.2854 7.6253 42 1 4.3089 -8.6257 8.0645 43 1 1.7276 -8.8126 4.6824 44 1 1.4054 -6.7775 3.2773 45 1 3.9903 -1.4819 0.8944 46 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715693427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:03 Heat of formation + Delta-G solvation = -40.901059 kcal Electronic energy + Delta-G solvation = -29330.512331 eV Core-core repulsion = 25133.743122 eV Total energy + Delta-G solvation = -4196.769210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.03988 -42.14652 -40.70427 -38.90782 -37.84912 -35.54629 -35.18464 -34.69328 -32.34301 -31.72198 -30.95614 -29.47197 -27.47500 -26.23084 -25.21345 -25.12806 -23.58860 -23.40458 -22.09370 -20.92589 -19.83773 -19.37432 -19.01681 -18.77035 -17.80218 -17.15172 -16.81811 -16.68033 -16.38656 -16.37736 -16.01132 -15.72130 -15.47058 -15.33830 -15.22718 -14.95200 -14.73706 -14.54117 -14.34455 -14.20074 -13.82135 -13.64556 -13.53579 -12.89545 -12.81439 -12.66121 -12.57329 -12.49627 -12.45801 -11.98060 -11.91596 -11.77993 -11.57601 -11.49398 -11.42701 -11.14458 -10.80757 -10.66620 -10.24324 -9.91789 -9.43797 -9.03374 -8.23326 -5.19431 -1.02713 -0.68211 0.61562 1.24957 1.63750 1.71180 1.86611 1.97874 2.04049 2.76827 2.83329 2.95328 3.06246 3.34541 3.44263 3.51200 3.54960 3.64024 3.72263 3.79251 3.84754 3.96102 4.19924 4.23180 4.24932 4.38447 4.44725 4.56692 4.63406 4.65642 4.73982 4.86364 4.87408 4.91796 4.93472 4.97536 5.00689 5.11082 5.19925 5.22654 5.26418 5.41726 5.58419 5.59010 5.71717 5.76401 6.37726 6.60999 6.61403 7.00176 7.17309 8.07413 8.19755 9.26841 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.002689 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.904766 B =10409.344032 C =12326.016214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.134 4.134 4 C 0.176 3.824 5 H 0.057 0.943 6 C 0.120 3.880 7 N -0.704 5.704 8 C 0.563 3.437 9 O -0.571 6.571 10 C -0.194 4.194 11 C 0.161 3.839 12 N -0.485 5.485 13 C 0.114 3.886 14 C -0.071 4.071 15 C -0.109 4.109 16 C 0.098 3.902 17 F -0.135 7.135 18 C -0.123 4.123 19 C -0.100 4.100 20 C 0.016 3.984 21 N -0.739 5.739 22 C -0.302 4.302 23 H 0.071 0.929 24 C -0.101 4.101 25 N -0.979 5.979 26 Si 1.115 2.885 27 H -0.303 1.303 28 H -0.284 1.284 29 H -0.278 1.278 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.409 0.591 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.177 0.823 43 H 0.166 0.834 44 H 0.168 0.832 45 H 0.358 0.642 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.591 -12.331 10.050 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.191 4.191 4 C 0.068 3.932 5 H 0.075 0.925 6 C -0.004 4.004 7 N -0.355 5.355 8 C 0.350 3.650 9 O -0.453 6.453 10 C -0.200 4.200 11 C -0.013 4.013 12 N -0.192 5.192 13 C -0.008 4.008 14 C -0.089 4.089 15 C -0.129 4.129 16 C 0.079 3.921 17 F -0.114 7.114 18 C -0.143 4.143 19 C -0.102 4.102 20 C -0.011 4.011 21 N -0.380 5.380 22 C -0.433 4.433 23 H 0.089 0.911 24 C -0.293 4.293 25 N -0.628 5.628 26 Si 0.942 3.058 27 H -0.229 1.229 28 H -0.210 1.210 29 H -0.204 1.204 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.247 0.753 40 H 0.183 0.817 41 H 0.182 0.818 42 H 0.194 0.806 43 H 0.184 0.816 44 H 0.185 0.815 45 H 0.190 0.810 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.159 -11.548 10.558 18.130 hybrid contribution -1.361 -1.057 -1.124 2.057 sum -10.519 -12.605 9.434 18.935 Atomic orbital electron populations 1.21856 0.93769 1.02011 1.02227 1.21616 0.96055 0.96772 0.98290 1.21718 1.01610 0.95532 1.00228 1.20639 0.83474 0.92225 0.96908 0.92518 1.21727 0.98435 0.91951 0.88254 1.45923 1.48134 1.10671 1.30775 1.18133 0.80752 0.81867 0.84253 1.90730 1.37905 1.68441 1.48208 1.20883 1.03519 0.96521 0.99034 1.23199 0.89659 1.00248 0.88159 1.67994 1.23406 1.09110 1.18709 1.19514 0.95189 0.90043 0.96012 1.20951 0.98829 0.93943 0.95221 1.21282 0.97026 0.94070 1.00501 1.17483 0.98956 0.79125 0.96533 1.91539 1.92702 1.33662 1.93495 1.21139 1.01653 0.93341 0.98120 1.18589 0.99604 0.95181 0.96802 1.22080 0.93444 0.92116 0.93417 1.42590 1.01108 1.19911 1.74439 1.20174 0.91456 0.97453 1.34241 0.91119 1.26740 0.95049 1.05074 1.02407 1.70998 1.37638 1.07898 1.46268 0.82760 0.74471 0.72473 0.76085 1.22940 1.21010 1.20434 0.92214 0.92062 0.92108 0.93193 0.93342 0.93091 0.93529 0.89377 0.92732 0.75316 0.81683 0.81767 0.80578 0.81605 0.81499 0.80965 0.94600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.84 71.98 0.64 -2.78 16 2 C -0.11 -3.34 2.69 -10.79 -0.03 -3.37 16 3 C -0.13 -4.54 8.26 71.98 0.59 -3.94 16 4 C 0.18 6.06 2.18 44.99 0.10 6.16 16 5 H 0.06 1.97 8.08 -2.39 -0.02 1.96 16 6 C 0.12 3.76 4.73 86.38 0.41 4.17 16 7 N -0.70 -22.01 5.34 -466.06 -2.49 -24.50 16 8 C 0.56 17.78 7.77 86.76 0.67 18.46 16 9 O -0.57 -20.54 16.38 -3.89 -0.06 -20.61 16 10 C -0.19 -5.40 5.89 -20.00 -0.12 -5.52 16 11 C 0.16 4.53 10.68 85.42 0.91 5.44 16 12 N -0.48 -13.63 10.30 -187.66 -1.93 -15.56 16 13 C 0.11 2.73 6.61 40.28 0.27 2.99 16 14 C -0.07 -1.25 9.97 22.33 0.22 -1.03 16 15 C -0.11 -1.48 9.92 22.09 0.22 -1.26 16 16 C 0.10 1.57 7.24 22.15 0.16 1.73 16 17 F -0.14 -2.21 17.25 44.97 0.78 -1.44 16 18 C -0.12 -2.09 9.73 22.38 0.22 -1.88 16 19 C -0.10 -2.19 5.74 -21.29 -0.12 -2.31 16 20 C 0.02 0.38 9.46 23.02 0.22 0.60 16 21 N -0.74 -32.24 4.44 -322.95 -1.43 -33.67 16 22 C -0.30 -14.89 7.57 84.03 0.64 -14.26 16 23 H 0.07 3.42 7.40 -2.91 -0.02 3.40 16 24 C -0.10 -5.43 5.50 84.86 0.47 -4.97 16 25 N -0.98 -58.05 13.70 21.65 0.30 -57.76 16 26 Si 1.11 49.69 29.92 68.60 2.05 51.74 16 27 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 29 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.37 6.55 -2.39 -0.02 1.36 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 2.02 6.01 -2.39 -0.01 2.01 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 2.48 6.71 -2.38 -0.02 2.46 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.41 12.97 6.16 -92.71 -0.57 12.39 16 40 H 0.17 4.56 6.37 -2.91 -0.02 4.55 16 41 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.18 1.28 8.06 -2.91 -0.02 1.25 16 43 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 44 H 0.17 3.48 7.70 -2.91 -0.02 3.46 16 45 H 0.36 17.09 6.63 -92.71 -0.61 16.48 16 46 H 0.24 14.42 6.77 -92.71 -0.63 13.79 16 Total: -1.00 -65.14 382.83 2.66 -62.48 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: -0.01 Total: 41.07 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 5.46 Total: -1.76 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -5.56 Total: -131.49 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.06 Total: -20.61 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.78 Total: -1.44 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 2.05 Total: 51.74 kcal Total: -65.14 2.66 -62.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715693427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.584 kcal (2) G-P(sol) polarization free energy of solvation -65.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds