Wall clock time and date at job start Wed Apr 1 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53012 * 109.47034 * 2 1 4 4 C 1.53006 * 109.47104 * 119.99338 * 2 1 3 5 5 H 1.08994 * 109.47567 * 300.00472 * 4 2 1 6 6 C 1.52995 * 109.47104 * 179.97438 * 4 2 1 7 7 N 1.46500 * 109.47361 * 185.00342 * 6 4 2 8 8 C 1.34770 * 120.00423 * 180.02562 * 7 6 4 9 9 O 1.21565 * 120.00151 * 0.02562 * 8 7 6 10 10 C 1.47767 * 120.00527 * 180.02562 * 8 7 6 11 11 C 1.40608 * 120.26239 * 0.02562 * 10 8 7 12 12 N 1.30791 * 121.52925 * 179.97438 * 11 10 8 13 13 C 1.33797 * 121.72533 * 0.02562 * 12 11 10 14 14 C 1.40742 * 120.82999 * 179.97438 * 13 12 11 15 15 F 1.35107 * 120.11725 * 0.02562 * 14 13 12 16 16 C 1.36329 * 119.77037 * 180.02562 * 14 13 12 17 17 C 1.39305 * 121.05812 * 0.02562 * 16 14 13 18 18 C 1.36143 * 120.86655 * 0.02562 * 17 16 14 19 19 C 1.40548 * 119.66973 * 359.97438 * 18 17 16 20 20 C 1.38990 * 120.27518 * 179.72337 * 10 8 7 21 21 N 1.46505 * 109.46692 * 60.00395 * 4 2 1 22 22 C 1.36931 * 119.99788 * 274.99780 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.09002 * 109.47452 * 300.00278 * 1 2 3 31 31 H 1.09001 * 109.46956 * 60.00206 * 1 2 3 32 32 H 1.08998 * 109.47373 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47294 * 239.99977 * 2 1 3 34 34 H 1.08995 * 109.46796 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46647 * 300.00002 * 3 2 1 36 36 H 1.08994 * 109.47099 * 59.99857 * 3 2 1 37 37 H 1.09005 * 109.47349 * 305.00426 * 6 4 2 38 38 H 1.09002 * 109.47351 * 65.00597 * 6 4 2 39 39 H 0.96998 * 119.99598 * 0.02562 * 7 6 4 40 40 H 1.07997 * 119.23885 * 359.97438 * 11 10 8 41 41 H 1.08003 * 119.47740 * 180.02562 * 16 14 13 42 42 H 1.07999 * 119.56893 * 179.97438 * 17 16 14 43 43 H 1.08003 * 120.16855 * 180.02562 * 18 17 16 44 44 H 1.08008 * 121.01892 * 359.97438 * 20 10 8 45 45 H 0.97000 * 119.99792 * 94.99575 * 21 4 2 46 46 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7217 1.2491 7 7 4.0583 -1.5139 2.3805 8 6 5.3832 -1.6552 2.5823 9 8 6.1733 -1.1249 1.8257 10 6 5.8758 -2.4546 3.7233 11 6 4.9671 -3.0709 4.6016 12 7 5.3757 -3.7843 5.6188 13 6 6.6766 -3.9633 5.8752 14 6 7.0953 -4.7344 6.9756 15 9 6.1813 -5.3063 7.7898 16 6 8.4265 -4.9023 7.2172 17 6 9.3858 -4.3212 6.3909 18 6 9.0193 -3.5678 5.3177 19 6 7.6559 -3.3729 5.0375 20 6 7.2411 -2.6088 3.9333 21 7 1.5516 -2.1024 1.2494 22 6 0.3101 -2.3896 1.7505 23 1 -0.3093 -1.5979 2.1454 24 6 -0.1549 -3.6976 1.7453 25 7 0.5998 -4.6623 1.2636 26 14 -1.8517 -4.0883 2.4219 27 1 -2.8543 -3.9902 1.3309 28 1 -1.8579 -5.4655 2.9775 29 1 -2.1916 -3.1199 3.4952 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.9329 -1.1563 0.3177 38 1 3.9337 0.3019 1.3384 39 1 3.4279 -1.9367 2.9844 40 1 3.9070 -2.9524 4.4324 41 1 8.7426 -5.4953 8.0627 42 1 10.4339 -4.4696 6.6048 43 1 9.7725 -3.1229 4.6843 44 1 7.9613 -2.1509 3.2713 45 1 2.1078 -2.8134 0.8944 46 1 0.2749 -5.5764 1.2603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732561832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:08 Heat of formation + Delta-G solvation = -23.058843 kcal Electronic energy + Delta-G solvation = -29494.525829 eV Core-core repulsion = 25298.530316 eV Total energy + Delta-G solvation = -4195.995513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.02767 -41.09933 -39.41422 -37.42643 -37.03624 -34.08075 -33.44464 -33.15212 -31.29359 -30.34523 -30.03285 -28.12124 -26.19506 -25.09308 -24.39080 -23.58747 -22.31734 -21.97050 -20.82783 -19.50733 -18.64267 -18.21853 -17.64805 -17.20476 -16.71187 -15.97090 -15.82475 -15.62118 -15.34767 -14.88090 -14.80661 -14.40160 -14.05170 -13.96795 -13.91254 -13.50410 -13.40385 -13.30634 -13.26897 -12.83599 -12.52701 -12.26275 -12.06078 -11.97509 -11.72234 -11.65742 -11.11465 -10.97250 -10.85761 -10.70832 -10.58885 -10.34452 -10.20059 -10.12542 -9.97530 -9.60166 -9.55065 -9.22104 -8.95566 -8.75606 -8.42861 -7.07188 -5.84780 -3.14592 -0.09486 0.28517 1.47935 2.32828 3.13043 3.29257 3.39219 3.45221 3.47091 3.67905 3.80646 3.97697 4.32450 4.44241 4.50849 4.52727 4.58331 4.75973 4.84971 5.08312 5.25660 5.28943 5.32540 5.46809 5.50023 5.59308 5.61133 5.70681 5.73278 5.79026 5.84623 5.93831 5.98070 6.13089 6.14291 6.20286 6.33896 6.39550 6.43331 6.49070 6.58645 6.60036 6.81716 7.03094 7.26913 7.56758 7.64472 7.73538 8.31533 8.33693 9.44560 9.97937 10.33801 11.36710 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.002993 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.460157 B = 9353.135671 C =11514.768597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.169 3.831 5 H 0.055 0.945 6 C 0.113 3.887 7 N -0.702 5.702 8 C 0.559 3.441 9 O -0.546 6.546 10 C -0.174 4.174 11 C 0.170 3.830 12 N -0.464 5.464 13 C 0.110 3.890 14 C 0.124 3.876 15 F -0.121 7.121 16 C -0.136 4.136 17 C -0.098 4.098 18 C -0.095 4.095 19 C -0.091 4.091 20 C 0.006 3.994 21 N -0.722 5.722 22 C -0.240 4.240 23 H 0.073 0.927 24 C -0.008 4.008 25 N -0.927 5.927 26 Si 0.902 3.098 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.410 0.590 40 H 0.173 0.827 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.158 0.842 45 H 0.385 0.615 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.566 4.910 7.814 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.058 3.942 5 H 0.073 0.927 6 C -0.011 4.011 7 N -0.353 5.353 8 C 0.345 3.655 9 O -0.426 6.426 10 C -0.180 4.180 11 C -0.003 4.003 12 N -0.171 5.171 13 C -0.013 4.013 14 C 0.104 3.896 15 F -0.099 7.099 16 C -0.156 4.156 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.093 4.093 20 C -0.021 4.021 21 N -0.364 5.364 22 C -0.371 4.371 23 H 0.091 0.909 24 C -0.205 4.205 25 N -0.575 5.575 26 Si 0.733 3.267 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.248 0.752 40 H 0.189 0.811 41 H 0.161 0.839 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.176 0.824 45 H 0.219 0.781 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.326 4.798 8.027 18.815 hybrid contribution -0.839 -0.515 -0.013 0.985 sum 15.487 4.283 8.014 17.956 Atomic orbital electron populations 1.21820 0.94885 1.03946 0.99026 1.21730 0.96976 0.94393 0.99991 1.21948 1.00462 0.97342 1.00984 1.20567 0.89109 0.88315 0.96190 0.92706 1.21825 0.95907 0.94842 0.88549 1.45930 1.06185 1.52249 1.30944 1.17883 0.82970 0.80556 0.84127 1.90753 1.55555 1.49149 1.47135 1.21145 0.95044 1.02826 0.98947 1.23295 1.00658 0.88762 0.87600 1.67981 1.14985 1.15354 1.18796 1.18985 0.89850 0.97454 0.94999 1.17165 0.86601 0.96249 0.89574 1.91549 1.66231 1.81911 1.70203 1.20942 0.90737 1.02061 1.01904 1.20696 0.99777 0.96803 0.94355 1.21096 0.93986 0.98443 0.97836 1.18625 0.94481 0.99820 0.96400 1.21925 0.95338 0.91457 0.93390 1.42475 1.18178 1.01792 1.73905 1.19180 0.92774 0.92414 1.32741 0.90870 1.24724 0.98229 0.95895 1.01616 1.69652 1.36751 0.99965 1.51130 0.86283 0.84430 0.77473 0.78551 1.21774 1.21822 1.20706 0.94036 0.94983 0.89464 0.91854 0.93046 0.93538 0.93165 0.91517 0.91213 0.75187 0.81055 0.83915 0.84351 0.84214 0.82422 0.78092 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.26 37.16 0.31 -2.12 16 2 C -0.11 -1.78 2.69 -90.61 -0.24 -2.02 16 3 C -0.15 -2.00 8.84 37.16 0.33 -1.67 16 4 C 0.17 2.93 2.18 -67.93 -0.15 2.79 16 5 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 6 C 0.11 1.79 4.73 -4.04 -0.02 1.77 16 7 N -0.70 -11.00 5.34 -61.28 -0.33 -11.33 16 8 C 0.56 8.83 7.77 -12.37 -0.10 8.73 16 9 O -0.55 -9.82 16.38 5.31 0.09 -9.73 16 10 C -0.17 -2.45 5.89 -104.83 -0.62 -3.06 16 11 C 0.17 2.47 10.68 -17.10 -0.18 2.29 16 12 N -0.46 -7.24 10.17 -10.63 -0.11 -7.35 16 13 C 0.11 1.51 6.61 -84.72 -0.56 0.95 16 14 C 0.12 1.53 7.30 -39.32 -0.29 1.24 16 15 F -0.12 -1.67 17.11 2.25 0.04 -1.64 16 16 C -0.14 -1.17 9.91 -39.87 -0.40 -1.57 16 17 C -0.10 -0.69 9.95 -39.94 -0.40 -1.09 16 18 C -0.09 -0.78 9.77 -39.46 -0.39 -1.16 16 19 C -0.09 -1.05 5.74 -106.82 -0.61 -1.67 16 20 C 0.01 0.07 9.46 -38.43 -0.36 -0.30 16 21 N -0.72 -15.68 4.44 -53.42 -0.24 -15.91 16 22 C -0.24 -5.88 7.57 -15.06 -0.11 -5.99 16 23 H 0.07 1.76 7.39 -52.49 -0.39 1.37 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 25 N -0.93 -26.18 13.06 55.49 0.72 -25.45 16 26 Si 0.90 21.27 29.55 -169.99 -5.02 16.25 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.81 6.01 -51.93 -0.31 1.50 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.03 6.71 -51.93 -0.35 0.68 16 39 H 0.41 6.45 6.16 -40.82 -0.25 6.20 16 40 H 0.17 2.36 6.37 -52.49 -0.33 2.02 16 41 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 42 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.16 1.65 7.70 -52.48 -0.40 1.24 16 45 H 0.39 9.22 7.80 -40.82 -0.32 8.91 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -30.23 384.35 -8.99 -39.23 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -6.06 Total: 13.31 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -3.88 Total: -3.17 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.05 Total: -60.04 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.23 -8.99 -39.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732561832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.170 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds