Wall clock time and date at job start Wed Apr 1 2020 03:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53012 * 109.47034 * 2 1 4 4 C 1.53006 * 109.47104 * 119.99338 * 2 1 3 5 5 H 1.08994 * 109.47567 * 300.00472 * 4 2 1 6 6 C 1.52995 * 109.47104 * 179.97438 * 4 2 1 7 7 N 1.46500 * 109.47361 * 185.00342 * 6 4 2 8 8 C 1.34770 * 120.00423 * 180.02562 * 7 6 4 9 9 O 1.21565 * 120.00151 * 0.02562 * 8 7 6 10 10 C 1.47767 * 120.00527 * 180.02562 * 8 7 6 11 11 C 1.40608 * 120.26239 * 0.02562 * 10 8 7 12 12 N 1.30791 * 121.52925 * 179.97438 * 11 10 8 13 13 C 1.33797 * 121.72533 * 0.02562 * 12 11 10 14 14 C 1.40742 * 120.82999 * 179.97438 * 13 12 11 15 15 F 1.35107 * 120.11725 * 0.02562 * 14 13 12 16 16 C 1.36329 * 119.77037 * 180.02562 * 14 13 12 17 17 C 1.39305 * 121.05812 * 0.02562 * 16 14 13 18 18 C 1.36143 * 120.86655 * 0.02562 * 17 16 14 19 19 C 1.40548 * 119.66973 * 359.97438 * 18 17 16 20 20 C 1.38990 * 120.27518 * 179.72337 * 10 8 7 21 21 N 1.46505 * 109.46692 * 60.00395 * 4 2 1 22 22 C 1.36931 * 119.99788 * 274.99780 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.09002 * 109.47452 * 300.00278 * 1 2 3 31 31 H 1.09001 * 109.46956 * 60.00206 * 1 2 3 32 32 H 1.08998 * 109.47373 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47294 * 239.99977 * 2 1 3 34 34 H 1.08995 * 109.46796 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46647 * 300.00002 * 3 2 1 36 36 H 1.08994 * 109.47099 * 59.99857 * 3 2 1 37 37 H 1.09005 * 109.47349 * 305.00426 * 6 4 2 38 38 H 1.09002 * 109.47351 * 65.00597 * 6 4 2 39 39 H 0.96998 * 119.99598 * 0.02562 * 7 6 4 40 40 H 1.07997 * 119.23885 * 359.97438 * 11 10 8 41 41 H 1.08003 * 119.47740 * 180.02562 * 16 14 13 42 42 H 1.07999 * 119.56893 * 179.97438 * 17 16 14 43 43 H 1.08003 * 120.16855 * 180.02562 * 18 17 16 44 44 H 1.08008 * 121.01892 * 359.97438 * 20 10 8 45 45 H 0.97000 * 119.99792 * 94.99575 * 21 4 2 46 46 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7217 1.2491 7 7 4.0583 -1.5139 2.3805 8 6 5.3832 -1.6552 2.5823 9 8 6.1733 -1.1249 1.8257 10 6 5.8758 -2.4546 3.7233 11 6 4.9671 -3.0709 4.6016 12 7 5.3757 -3.7843 5.6188 13 6 6.6766 -3.9633 5.8752 14 6 7.0953 -4.7344 6.9756 15 9 6.1813 -5.3063 7.7898 16 6 8.4265 -4.9023 7.2172 17 6 9.3858 -4.3212 6.3909 18 6 9.0193 -3.5678 5.3177 19 6 7.6559 -3.3729 5.0375 20 6 7.2411 -2.6088 3.9333 21 7 1.5516 -2.1024 1.2494 22 6 0.3101 -2.3896 1.7505 23 1 -0.3093 -1.5979 2.1454 24 6 -0.1549 -3.6976 1.7453 25 7 0.5998 -4.6623 1.2636 26 14 -1.8517 -4.0883 2.4219 27 1 -2.8543 -3.9902 1.3309 28 1 -1.8579 -5.4655 2.9775 29 1 -2.1916 -3.1199 3.4952 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.9329 -1.1563 0.3177 38 1 3.9337 0.3019 1.3384 39 1 3.4279 -1.9367 2.9844 40 1 3.9070 -2.9524 4.4324 41 1 8.7426 -5.4953 8.0627 42 1 10.4339 -4.4696 6.6048 43 1 9.7725 -3.1229 4.6843 44 1 7.9613 -2.1509 3.2713 45 1 2.1078 -2.8134 0.8944 46 1 0.2749 -5.5764 1.2603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732561832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:07 Heat of formation + Delta-G solvation = -41.809334 kcal Electronic energy + Delta-G solvation = -29495.338912 eV Core-core repulsion = 25298.530316 eV Total energy + Delta-G solvation = -4196.808595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.94974 -42.06673 -40.60969 -38.78612 -37.99800 -35.40605 -34.91229 -34.40672 -32.41189 -31.89185 -30.86298 -29.53530 -27.47504 -26.31740 -25.30878 -25.18293 -23.35935 -23.16794 -22.02164 -20.85134 -19.74871 -19.29455 -18.94409 -18.51326 -17.77869 -17.04667 -16.92249 -16.82286 -16.54038 -16.25536 -15.72558 -15.68815 -15.52452 -15.12856 -14.98413 -14.95137 -14.75221 -14.41542 -14.27756 -14.09448 -13.77545 -13.41742 -13.17337 -12.90012 -12.84092 -12.79699 -12.71527 -12.51929 -12.45476 -12.27209 -11.98672 -11.78569 -11.55778 -11.47795 -11.33691 -11.27440 -10.83299 -10.66913 -10.19896 -9.96445 -9.26436 -8.95235 -7.87513 -5.13952 -0.97699 -0.61733 0.59951 1.39219 1.49172 1.51039 1.57355 2.06170 2.13265 2.59736 2.82745 2.86121 3.05934 3.45053 3.49259 3.59356 3.64712 3.67018 3.83791 3.89064 3.93777 4.11199 4.29897 4.30851 4.33805 4.40290 4.47852 4.61543 4.69090 4.78077 4.79346 4.94796 4.97980 4.99632 5.06117 5.08199 5.17636 5.23152 5.27006 5.28272 5.32656 5.49113 5.61625 5.67421 5.69543 5.79112 6.32676 6.44584 6.58860 7.06611 7.41325 8.12835 8.37299 9.35105 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.002993 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.460157 B = 9353.135671 C =11514.768597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C -0.141 4.141 4 C 0.170 3.830 5 H 0.058 0.942 6 C 0.121 3.879 7 N -0.704 5.704 8 C 0.564 3.436 9 O -0.570 6.570 10 C -0.196 4.196 11 C 0.162 3.838 12 N -0.500 5.500 13 C 0.085 3.915 14 C 0.078 3.922 15 F -0.141 7.141 16 C -0.107 4.107 17 C -0.086 4.086 18 C -0.084 4.084 19 C -0.102 4.102 20 C 0.021 3.979 21 N -0.728 5.728 22 C -0.213 4.213 23 H 0.080 0.920 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.954 3.046 27 H -0.294 1.294 28 H -0.305 1.305 29 H -0.269 1.269 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.409 0.591 40 H 0.165 0.835 41 H 0.173 0.827 42 H 0.186 0.814 43 H 0.177 0.823 44 H 0.178 0.822 45 H 0.372 0.628 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.559 6.495 8.545 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.199 4.199 4 C 0.061 3.939 5 H 0.076 0.924 6 C -0.003 4.003 7 N -0.354 5.354 8 C 0.351 3.649 9 O -0.451 6.451 10 C -0.201 4.201 11 C -0.012 4.012 12 N -0.208 5.208 13 C -0.037 4.037 14 C 0.058 3.942 15 F -0.120 7.120 16 C -0.127 4.127 17 C -0.104 4.104 18 C -0.103 4.103 19 C -0.104 4.104 20 C -0.005 4.005 21 N -0.368 5.368 22 C -0.345 4.345 23 H 0.098 0.902 24 C -0.262 4.262 25 N -0.617 5.617 26 Si 0.785 3.215 27 H -0.222 1.222 28 H -0.233 1.233 29 H -0.194 1.194 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.246 0.754 40 H 0.182 0.818 41 H 0.190 0.810 42 H 0.204 0.796 43 H 0.194 0.806 44 H 0.196 0.804 45 H 0.204 0.796 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 19.313 6.445 8.772 22.169 hybrid contribution -1.571 -0.960 -0.174 1.850 sum 17.742 5.485 8.599 20.464 Atomic orbital electron populations 1.21738 0.95556 1.01721 1.00273 1.21621 0.96302 0.96372 0.98431 1.21857 1.01049 0.94821 1.02146 1.20724 0.90149 0.86056 0.96937 0.92397 1.21727 0.94540 0.95772 0.88230 1.45939 1.06425 1.52283 1.30792 1.18065 0.82569 0.80100 0.84166 1.90724 1.55918 1.50354 1.48138 1.20949 0.96002 1.04257 0.98914 1.23176 1.00601 0.89383 0.88035 1.67908 1.16844 1.16461 1.19579 1.19401 0.89694 0.98384 0.96191 1.17585 0.87888 0.98464 0.90308 1.91488 1.67219 1.82501 1.70747 1.21451 0.89206 1.00027 1.02036 1.21266 1.01589 0.94729 0.92767 1.21574 0.92756 0.97621 0.98321 1.18860 0.95871 0.99767 0.95882 1.22212 0.94726 0.90274 0.93315 1.42585 1.17244 1.03429 1.73496 1.19452 0.93197 0.92038 1.29766 0.90241 1.25307 1.00990 0.96297 1.03597 1.69792 1.38175 0.99706 1.54029 0.85423 0.81436 0.76614 0.78029 1.22159 1.23266 1.19416 0.93462 0.93098 0.93274 0.93018 0.92069 0.92147 0.92253 0.92645 0.89324 0.75363 0.81793 0.80968 0.79649 0.80573 0.80446 0.79551 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 8.26 71.98 0.59 -3.97 16 2 C -0.11 -3.33 2.69 -10.79 -0.03 -3.36 16 3 C -0.14 -3.39 8.84 71.99 0.64 -2.76 16 4 C 0.17 5.87 2.18 44.99 0.10 5.97 16 5 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 6 C 0.12 3.82 4.73 86.38 0.41 4.23 16 7 N -0.70 -22.59 5.34 -466.05 -2.49 -25.07 16 8 C 0.56 18.08 7.77 86.76 0.67 18.75 16 9 O -0.57 -20.30 16.38 -3.92 -0.06 -20.36 16 10 C -0.20 -5.64 5.89 -20.00 -0.12 -5.76 16 11 C 0.16 5.03 10.68 85.43 0.91 5.94 16 12 N -0.50 -16.62 10.17 -187.54 -1.91 -18.53 16 13 C 0.09 2.38 6.61 40.32 0.27 2.64 16 14 C 0.08 1.89 7.30 22.44 0.16 2.05 16 15 F -0.14 -4.07 17.11 44.97 0.77 -3.30 16 16 C -0.11 -1.51 9.91 22.08 0.22 -1.29 16 17 C -0.09 -0.78 9.95 22.04 0.22 -0.56 16 18 C -0.08 -1.03 9.77 22.35 0.22 -0.81 16 19 C -0.10 -2.20 5.74 -21.29 -0.12 -2.32 16 20 C 0.02 0.49 9.46 23.01 0.22 0.71 16 21 N -0.73 -32.30 4.44 -322.93 -1.43 -33.73 16 22 C -0.21 -10.57 7.57 84.04 0.64 -9.93 16 23 H 0.08 3.81 7.39 -2.91 -0.02 3.79 16 24 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 25 N -0.97 -56.76 13.06 21.65 0.28 -56.48 16 26 Si 0.95 44.92 29.55 68.60 2.03 46.95 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 28 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 29 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 2.03 6.01 -2.39 -0.01 2.02 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.37 6.54 -2.39 -0.02 1.35 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.09 2.48 6.71 -2.39 -0.02 2.47 16 39 H 0.41 13.49 6.16 -92.71 -0.57 12.92 16 40 H 0.17 5.03 6.37 -2.91 -0.02 5.02 16 41 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 42 H 0.19 0.07 8.06 -2.91 -0.02 0.04 16 43 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 44 H 0.18 3.31 7.70 -2.91 -0.02 3.29 16 45 H 0.37 18.52 7.80 -92.71 -0.72 17.80 16 46 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 Total: -1.00 -69.59 384.35 2.39 -67.20 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.26 Total: 37.08 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 5.46 Total: 6.24 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -5.55 Total: -133.81 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.06 Total: -20.36 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.77 Total: -3.30 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -69.59 2.39 -67.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732561832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.393 kcal (2) G-P(sol) polarization free energy of solvation -69.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds