Wall clock time and date at job start Wed Apr 1 2020 04:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47200 * 16.90366 * 3 2 1 5 5 C 1.34772 * 120.00498 * 89.99740 * 4 3 2 6 6 O 1.21286 * 120.00406 * 180.02562 * 5 4 3 7 7 C 1.50701 * 119.99707 * 359.97438 * 5 4 3 8 8 C 1.50705 * 109.46989 * 179.97438 * 7 5 4 9 9 C 1.38238 * 119.58981 * 124.99915 * 8 7 5 10 10 C 1.38590 * 119.19132 * 179.97438 * 9 8 7 11 11 C 1.38880 * 118.39558 * 0.25805 * 10 9 8 12 12 F 1.35099 * 120.43980 * 179.74664 * 11 10 9 13 13 C 1.38417 * 119.11358 * 359.51935 * 11 10 9 14 14 N 1.31840 * 119.59135 * 305.02440 * 8 7 5 15 15 C 1.46504 * 119.99908 * 269.99863 * 4 3 2 16 16 C 1.53043 * 109.45778 * 60.02237 * 15 4 3 17 17 C 1.53198 * 109.31080 * 178.60366 * 16 15 4 18 18 N 1.46927 * 108.76425 * 54.65509 * 17 16 15 19 19 C 1.36936 * 120.62961 * 126.36183 * 18 17 16 20 20 H 1.08010 * 119.99647 * 331.86139 * 19 18 17 21 21 C 1.38810 * 120.00292 * 151.85721 * 19 18 17 22 22 N 1.31617 * 120.00040 * 343.07619 * 21 19 18 23 23 Si 1.86801 * 120.00092 * 163.07554 * 21 19 18 24 24 H 1.48498 * 109.47376 * 60.00068 * 23 21 19 25 25 H 1.48491 * 109.47253 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47027 * 300.00307 * 23 21 19 27 27 C 1.46924 * 118.74041 * 306.38742 * 18 17 16 28 28 C 1.53040 * 109.45824 * 299.97596 * 15 4 3 29 29 H 4.40643 * 5.51351 * 179.97438 * 4 1 2 30 30 H 1.08995 * 109.47246 * 256.90006 * 3 2 1 31 31 H 1.08999 * 109.46945 * 136.89875 * 3 2 1 32 32 H 1.08995 * 109.47288 * 60.00089 * 7 5 4 33 33 H 1.09002 * 109.47289 * 299.99744 * 7 5 4 34 34 H 1.08004 * 120.40090 * 0.02562 * 9 8 7 35 35 H 1.07998 * 120.79907 * 179.97438 * 10 9 8 36 36 H 1.08003 * 119.63577 * 180.21205 * 13 11 10 37 37 H 1.08999 * 109.46451 * 179.97438 * 15 4 3 38 38 H 1.08997 * 109.50021 * 298.56587 * 16 15 4 39 39 H 1.09003 * 109.49544 * 58.67165 * 16 15 4 40 40 H 1.09005 * 109.59472 * 294.87109 * 17 16 15 41 41 H 1.08993 * 109.70181 * 174.50734 * 17 16 15 42 42 H 0.97001 * 120.00283 * 179.97438 * 22 21 19 43 43 H 1.09000 * 109.58496 * 293.81799 * 27 18 17 44 44 H 1.08999 * 109.70196 * 173.46763 * 27 18 17 45 45 H 1.09007 * 109.49629 * 301.33300 * 28 15 4 46 46 H 1.09003 * 109.50270 * 61.42636 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3206 -0.4016 5 6 3.3597 -1.5892 -1.7030 6 8 3.7640 -2.6832 -2.0355 7 6 3.1074 -0.5303 -2.7453 8 6 3.4348 -1.0804 -4.1096 9 6 2.4798 -1.0419 -5.1083 10 6 2.7899 -1.5496 -6.3601 11 6 4.0554 -2.0854 -6.5605 12 9 4.3998 -2.5962 -7.7628 13 6 4.9606 -2.0848 -5.5133 14 7 4.6284 -1.5928 -4.3358 15 6 3.3796 -2.3502 0.6116 16 6 2.0781 -2.6493 1.3591 17 6 2.3297 -3.7508 2.3937 18 7 3.4425 -3.3397 3.2606 19 6 3.2978 -3.3259 4.6222 20 1 2.3236 -3.1658 5.0601 21 6 4.4032 -3.5179 5.4396 22 7 5.5067 -4.0358 4.9434 23 14 4.3245 -3.0411 7.2441 24 1 3.2455 -3.8115 7.9131 25 1 5.6252 -3.3440 7.8933 26 1 4.0403 -1.5882 7.3602 27 6 4.7132 -2.9431 2.6388 28 6 4.4347 -1.8509 1.6013 29 1 -1.0498 -0.0004 0.0001 30 1 3.0093 0.2337 1.0009 31 1 3.0090 0.7512 -0.7022 32 1 3.7369 0.3362 -2.5427 33 1 2.0592 -0.2330 -2.7150 34 1 1.5041 -0.6206 -4.9156 35 1 2.0633 -1.5331 -7.1590 36 1 5.9482 -2.4962 -5.6609 37 1 3.7368 -3.2589 0.1271 38 1 1.7332 -1.7472 1.8645 39 1 1.3199 -2.9825 0.6504 40 1 2.5874 -4.6792 1.8839 41 1 1.4337 -3.9011 2.9957 42 1 6.2792 -4.1696 5.5145 43 1 5.1652 -3.8056 2.1491 44 1 5.3911 -2.5588 3.4009 45 1 5.3541 -1.6157 1.0650 46 1 4.0674 -0.9564 2.1043 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733368881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:09 Heat of formation + Delta-G solvation = 42.554963 kcal Electronic energy + Delta-G solvation = -29888.931453 eV Core-core repulsion = 25695.781168 eV Total energy + Delta-G solvation = -4193.150285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -49.25199 -40.74843 -39.71861 -37.41969 -35.64080 -33.37213 -32.81104 -32.77614 -32.10114 -30.22554 -29.68263 -28.15358 -27.13276 -25.01294 -24.25138 -23.04161 -22.18765 -21.76197 -19.71355 -19.24597 -18.11136 -17.89238 -17.60787 -17.06482 -16.85200 -16.39377 -16.03486 -15.76362 -15.37600 -14.78579 -14.37526 -14.31358 -14.10263 -13.83561 -13.72690 -13.51858 -13.34326 -13.30499 -13.09419 -12.88018 -12.74038 -12.49870 -12.24167 -12.10633 -11.51697 -11.16309 -10.97830 -10.71947 -10.55801 -10.42434 -10.23880 -10.19521 -10.15319 -10.07163 -9.84342 -9.77449 -9.67345 -9.49467 -9.07564 -8.60155 -8.38151 -6.67514 -5.78302 -3.21019 0.58278 0.81856 2.44188 2.73223 2.76241 3.19171 3.38385 3.44434 3.45188 3.50573 3.68327 3.97300 4.23352 4.30376 4.42328 4.48728 4.49837 4.65740 4.97074 5.02372 5.08330 5.21790 5.31488 5.36300 5.41750 5.49516 5.51924 5.53442 5.60514 5.63248 5.85782 5.89438 6.09102 6.21954 6.29283 6.34325 6.51670 6.56971 6.64251 6.78675 6.89332 6.98123 7.34396 7.47525 7.54648 7.62484 7.66887 7.79656 8.29019 8.45484 9.21550 9.84727 10.41950 11.30400 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018767 B = 0.002424 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.661250 B =11548.266232 C =12449.586310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.201 4.201 3 C 0.213 3.787 4 N -0.603 5.603 5 C 0.521 3.479 6 O -0.519 6.519 7 C -0.094 4.094 8 C 0.136 3.864 9 C -0.138 4.138 10 C -0.109 4.109 11 C 0.041 3.959 12 F -0.132 7.132 13 C 0.083 3.917 14 N -0.426 5.426 15 C 0.147 3.853 16 C -0.134 4.134 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.174 3.826 28 C -0.146 4.146 29 H 0.215 0.785 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.019 0.981 41 H 0.056 0.944 42 H 0.255 0.745 43 H 0.020 0.980 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 11.663 -20.697 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.202 4.202 3 C 0.090 3.910 4 N -0.335 5.335 5 C 0.308 3.692 6 O -0.393 6.393 7 C -0.134 4.134 8 C -0.002 4.002 9 C -0.158 4.158 10 C -0.136 4.136 11 C 0.019 3.981 12 F -0.111 7.111 13 C -0.076 4.076 14 N -0.134 5.134 15 C 0.045 3.955 16 C -0.174 4.174 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.048 3.952 28 C -0.186 4.186 29 H 0.232 0.768 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.185 0.815 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.259 10.961 -20.134 23.763 hybrid contribution -0.894 0.186 0.037 0.914 sum -7.153 11.147 -20.097 24.069 Atomic orbital electron populations 1.24897 0.95873 0.99189 1.00856 1.23586 0.94909 1.01163 1.00579 1.18428 0.83694 0.85414 1.03493 1.48247 1.65108 1.13643 1.06533 1.20152 0.77627 0.88751 0.82697 1.90740 1.44317 1.24103 1.80188 1.20698 1.04241 0.98952 0.89496 1.20688 0.89584 0.95089 0.94845 1.21862 1.00814 1.00564 0.92513 1.21593 0.95437 0.97829 0.98728 1.18865 0.95648 1.00779 0.82768 1.91519 1.92456 1.84722 1.42406 1.22940 0.99918 0.97647 0.87091 1.67530 1.19105 1.06630 1.20113 1.21230 0.96238 0.90646 0.87362 1.22352 0.95773 1.01101 0.98212 1.20870 0.92307 0.93248 0.91516 1.44073 1.09381 1.75911 1.02066 1.19127 0.94771 1.43175 0.81215 0.91760 1.25053 0.97465 0.99197 0.97875 1.70019 1.03916 1.45284 1.35414 0.86374 0.76790 0.78534 0.85081 1.20904 1.21643 1.21062 1.20745 0.88710 0.92605 0.93143 1.22583 0.96959 1.01437 0.97638 0.76801 0.87250 0.88425 0.86755 0.87235 0.83741 0.83520 0.81540 0.88524 0.92011 0.93236 0.96337 0.92582 0.93526 0.96147 0.89122 0.92779 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 19.25 29.55 0.57 -1.34 16 2 C -0.20 -2.24 11.92 -37.12 -0.44 -2.68 16 3 C 0.21 2.29 5.15 -6.83 -0.04 2.26 16 4 N -0.60 -8.48 2.37 -169.37 -0.40 -8.88 16 5 C 0.52 7.53 7.60 -10.99 -0.08 7.45 16 6 O -0.52 -9.77 14.66 5.55 0.08 -9.69 16 7 C -0.09 -0.92 4.65 -29.03 -0.14 -1.05 16 8 C 0.14 1.51 5.76 -82.59 -0.48 1.04 16 9 C -0.14 -1.16 9.71 -39.45 -0.38 -1.54 16 10 C -0.11 -0.91 10.16 -39.21 -0.40 -1.31 16 11 C 0.04 0.41 7.34 -39.28 -0.29 0.12 16 12 F -0.13 -1.33 17.28 2.25 0.04 -1.29 16 13 C 0.08 0.93 11.17 -17.47 -0.20 0.73 16 14 N -0.43 -5.60 9.22 -9.42 -0.09 -5.69 16 15 C 0.15 2.57 2.48 -67.89 -0.17 2.40 16 16 C -0.13 -2.39 4.73 -26.61 -0.13 -2.51 16 17 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 18 N -0.59 -14.73 2.99 -172.32 -0.52 -15.24 16 19 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 20 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 21 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 22 N -0.90 -26.13 11.19 55.49 0.62 -25.51 16 23 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 28 C -0.15 -2.74 5.31 -26.61 -0.14 -2.88 16 29 H 0.22 1.47 7.80 -54.10 -0.42 1.05 16 30 H 0.11 1.23 6.46 -51.93 -0.34 0.90 16 31 H 0.10 0.72 6.44 -51.93 -0.33 0.38 16 32 H 0.11 0.87 7.40 -51.93 -0.38 0.49 16 33 H 0.11 0.79 7.68 -51.93 -0.40 0.40 16 34 H 0.14 0.78 7.95 -52.48 -0.42 0.36 16 35 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.10 1.96 6.90 -51.93 -0.36 1.60 16 38 H 0.06 1.10 7.02 -51.93 -0.36 0.73 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 45 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 46 H 0.06 1.04 6.72 -51.93 -0.35 0.69 16 LS Contribution 383.45 15.07 5.78 5.78 Total: -1.00 -33.95 383.45 -8.27 -42.22 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.18 Total: 0.93 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -2.58 Total: 0.89 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.38 Total: -55.32 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.95 -8.27 -42.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733368881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.773 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds