Wall clock time and date at job start Wed Apr 1 2020 04:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47200 * 16.90366 * 3 2 1 5 5 C 1.34772 * 120.00498 * 89.99740 * 4 3 2 6 6 O 1.21286 * 120.00406 * 180.02562 * 5 4 3 7 7 C 1.50701 * 119.99707 * 359.97438 * 5 4 3 8 8 C 1.50705 * 109.46989 * 179.97438 * 7 5 4 9 9 C 1.38238 * 119.58981 * 124.99915 * 8 7 5 10 10 C 1.38590 * 119.19132 * 179.97438 * 9 8 7 11 11 C 1.38880 * 118.39558 * 0.25805 * 10 9 8 12 12 F 1.35099 * 120.43980 * 179.74664 * 11 10 9 13 13 C 1.38417 * 119.11358 * 359.51935 * 11 10 9 14 14 N 1.31840 * 119.59135 * 305.02440 * 8 7 5 15 15 C 1.46504 * 119.99908 * 269.99863 * 4 3 2 16 16 C 1.53043 * 109.45778 * 60.02237 * 15 4 3 17 17 C 1.53198 * 109.31080 * 178.60366 * 16 15 4 18 18 N 1.46927 * 108.76425 * 54.65509 * 17 16 15 19 19 C 1.36936 * 120.62961 * 126.36183 * 18 17 16 20 20 H 1.08010 * 119.99647 * 331.86139 * 19 18 17 21 21 C 1.38810 * 120.00292 * 151.85721 * 19 18 17 22 22 N 1.31617 * 120.00040 * 343.07619 * 21 19 18 23 23 Si 1.86801 * 120.00092 * 163.07554 * 21 19 18 24 24 H 1.48498 * 109.47376 * 60.00068 * 23 21 19 25 25 H 1.48491 * 109.47253 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47027 * 300.00307 * 23 21 19 27 27 C 1.46924 * 118.74041 * 306.38742 * 18 17 16 28 28 C 1.53040 * 109.45824 * 299.97596 * 15 4 3 29 29 H 4.40643 * 5.51351 * 179.97438 * 4 1 2 30 30 H 1.08995 * 109.47246 * 256.90006 * 3 2 1 31 31 H 1.08999 * 109.46945 * 136.89875 * 3 2 1 32 32 H 1.08995 * 109.47288 * 60.00089 * 7 5 4 33 33 H 1.09002 * 109.47289 * 299.99744 * 7 5 4 34 34 H 1.08004 * 120.40090 * 0.02562 * 9 8 7 35 35 H 1.07998 * 120.79907 * 179.97438 * 10 9 8 36 36 H 1.08003 * 119.63577 * 180.21205 * 13 11 10 37 37 H 1.08999 * 109.46451 * 179.97438 * 15 4 3 38 38 H 1.08997 * 109.50021 * 298.56587 * 16 15 4 39 39 H 1.09003 * 109.49544 * 58.67165 * 16 15 4 40 40 H 1.09005 * 109.59472 * 294.87109 * 17 16 15 41 41 H 1.08993 * 109.70181 * 174.50734 * 17 16 15 42 42 H 0.97001 * 120.00283 * 179.97438 * 22 21 19 43 43 H 1.09000 * 109.58496 * 293.81799 * 27 18 17 44 44 H 1.08999 * 109.70196 * 173.46763 * 27 18 17 45 45 H 1.09007 * 109.49629 * 301.33300 * 28 15 4 46 46 H 1.09003 * 109.50270 * 61.42636 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3206 -0.4016 5 6 3.3597 -1.5892 -1.7030 6 8 3.7640 -2.6832 -2.0355 7 6 3.1074 -0.5303 -2.7453 8 6 3.4348 -1.0804 -4.1096 9 6 2.4798 -1.0419 -5.1083 10 6 2.7899 -1.5496 -6.3601 11 6 4.0554 -2.0854 -6.5605 12 9 4.3998 -2.5962 -7.7628 13 6 4.9606 -2.0848 -5.5133 14 7 4.6284 -1.5928 -4.3358 15 6 3.3796 -2.3502 0.6116 16 6 2.0781 -2.6493 1.3591 17 6 2.3297 -3.7508 2.3937 18 7 3.4425 -3.3397 3.2606 19 6 3.2978 -3.3259 4.6222 20 1 2.3236 -3.1658 5.0601 21 6 4.4032 -3.5179 5.4396 22 7 5.5067 -4.0358 4.9434 23 14 4.3245 -3.0411 7.2441 24 1 3.2455 -3.8115 7.9131 25 1 5.6252 -3.3440 7.8933 26 1 4.0403 -1.5882 7.3602 27 6 4.7132 -2.9431 2.6388 28 6 4.4347 -1.8509 1.6013 29 1 -1.0498 -0.0004 0.0001 30 1 3.0093 0.2337 1.0009 31 1 3.0090 0.7512 -0.7022 32 1 3.7369 0.3362 -2.5427 33 1 2.0592 -0.2330 -2.7150 34 1 1.5041 -0.6206 -4.9156 35 1 2.0633 -1.5331 -7.1590 36 1 5.9482 -2.4962 -5.6609 37 1 3.7368 -3.2589 0.1271 38 1 1.7332 -1.7472 1.8645 39 1 1.3199 -2.9825 0.6504 40 1 2.5874 -4.6792 1.8839 41 1 1.4337 -3.9011 2.9957 42 1 6.2792 -4.1696 5.5145 43 1 5.1652 -3.8056 2.1491 44 1 5.3911 -2.5588 3.4009 45 1 5.3541 -1.6157 1.0650 46 1 4.0674 -0.9564 2.1043 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733368881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:08 Heat of formation + Delta-G solvation = 22.671696 kcal Electronic energy + Delta-G solvation = -29889.793656 eV Core-core repulsion = 25695.781168 eV Total energy + Delta-G solvation = -4194.012488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.00803 -41.66262 -40.74278 -38.94973 -36.96177 -34.76479 -33.70239 -33.48669 -33.42319 -31.84731 -31.41243 -29.07461 -28.13029 -26.77700 -24.99307 -24.20343 -23.88654 -23.10035 -20.88785 -20.71925 -19.12294 -18.65077 -18.53588 -18.43478 -18.00672 -17.48963 -16.93414 -16.80546 -16.55481 -16.36514 -15.63886 -15.39508 -15.08076 -15.04572 -14.93459 -14.81143 -14.59282 -14.32961 -14.28289 -14.08927 -13.96487 -13.82341 -13.25676 -13.14470 -13.00665 -12.92441 -12.65609 -12.56102 -12.16581 -12.05733 -11.93367 -11.52437 -11.36760 -11.27882 -11.07395 -10.92323 -10.75812 -10.56075 -10.51279 -9.85372 -9.75504 -8.71789 -7.87526 -5.34146 -0.15029 0.14299 1.48328 1.50072 1.52358 1.57780 1.68257 2.01015 2.34292 2.51889 2.67435 2.96715 3.25675 3.28201 3.53759 3.59745 3.63483 3.68940 3.78972 3.88794 3.97408 4.08782 4.25087 4.30612 4.33810 4.41301 4.46422 4.53373 4.63148 4.63712 4.77216 4.81503 4.84386 4.87085 4.95614 5.02911 5.04118 5.13841 5.20058 5.28791 5.45106 5.56180 5.61642 5.63469 5.69618 6.38079 6.41494 6.79703 6.88483 7.13399 7.20587 7.83182 8.36771 9.19465 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018767 B = 0.002424 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.661250 B =11548.266232 C =12449.586310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.232 4.232 3 C 0.209 3.791 4 N -0.600 5.600 5 C 0.516 3.484 6 O -0.572 6.572 7 C -0.082 4.082 8 C 0.113 3.887 9 C -0.127 4.127 10 C -0.105 4.105 11 C 0.032 3.968 12 F -0.136 7.136 13 C 0.062 3.938 14 N -0.466 5.466 15 C 0.157 3.843 16 C -0.112 4.112 17 C 0.143 3.857 18 N -0.607 5.607 19 C -0.263 4.263 20 H 0.070 0.930 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.970 3.030 24 H -0.276 1.276 25 H -0.296 1.296 26 H -0.274 1.274 27 C 0.182 3.818 28 C -0.128 4.128 29 H 0.241 0.759 30 H 0.104 0.896 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.170 0.830 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.003 0.997 41 H 0.061 0.939 42 H 0.250 0.750 43 H -0.013 1.013 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 14.494 -21.626 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.234 4.234 3 C 0.088 3.912 4 N -0.331 5.331 5 C 0.305 3.695 6 O -0.450 6.450 7 C -0.122 4.122 8 C -0.025 4.025 9 C -0.146 4.146 10 C -0.131 4.131 11 C 0.011 3.989 12 F -0.115 7.115 13 C -0.096 4.096 14 N -0.174 5.174 15 C 0.054 3.946 16 C -0.152 4.152 17 C 0.017 3.983 18 N -0.331 5.331 19 C -0.393 4.393 20 H 0.087 0.913 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.798 3.202 24 H -0.202 1.202 25 H -0.222 1.222 26 H -0.200 1.200 27 C 0.055 3.945 28 C -0.168 4.168 29 H 0.257 0.743 30 H 0.122 0.878 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.201 0.799 35 H 0.196 0.804 36 H 0.187 0.813 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.021 0.979 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.005 0.995 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.220 13.835 -21.085 26.851 hybrid contribution -0.042 -0.750 0.279 0.801 sum -9.262 13.085 -20.806 26.266 Atomic orbital electron populations 1.25632 0.96683 0.97573 0.99529 1.23679 0.95235 1.02572 1.01867 1.18692 0.84063 0.84107 1.04353 1.48145 1.65057 1.14113 1.05828 1.21015 0.76180 0.89092 0.83202 1.90726 1.46608 1.26677 1.80984 1.20776 1.06787 0.97619 0.87017 1.21072 0.89712 0.95604 0.96101 1.22245 1.01582 0.99246 0.91568 1.21993 0.95009 0.96401 0.99695 1.18985 0.96424 1.01166 0.82349 1.91506 1.92622 1.84874 1.42486 1.23054 1.00733 0.98474 0.87387 1.67468 1.20903 1.08025 1.21050 1.20740 0.95487 0.90725 0.87652 1.22079 0.96085 0.99816 0.97234 1.20999 0.91290 0.94045 0.91947 1.44317 1.10258 1.76418 1.02068 1.19490 0.95009 1.42358 0.82439 0.91253 1.25857 0.97195 0.99508 1.02080 1.70196 1.04529 1.46853 1.36760 0.85306 0.76426 0.78542 0.79955 1.20154 1.22249 1.19975 1.20508 0.88000 0.92748 0.93215 1.22298 0.98010 0.99812 0.96648 0.74259 0.87812 0.84492 0.84267 0.83760 0.79901 0.80433 0.81271 0.91911 0.91214 0.91913 0.97871 0.92083 0.94070 0.99540 0.92047 0.92036 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 19.25 74.32 1.43 -1.36 16 2 C -0.23 -4.29 11.92 31.13 0.37 -3.92 16 3 C 0.21 3.83 5.15 84.57 0.44 4.27 16 4 N -0.60 -15.87 2.37 -808.16 -1.91 -17.78 16 5 C 0.52 14.21 7.60 87.66 0.67 14.88 16 6 O -0.57 -21.89 14.66 -3.05 -0.04 -21.93 16 7 C -0.08 -1.35 4.65 29.10 0.14 -1.21 16 8 C 0.11 2.28 5.76 42.56 0.25 2.53 16 9 C -0.13 -1.70 9.71 22.35 0.22 -1.49 16 10 C -0.10 -1.46 10.16 22.51 0.23 -1.23 16 11 C 0.03 0.62 7.34 22.47 0.17 0.78 16 12 F -0.14 -2.67 17.28 44.97 0.78 -1.89 16 13 C 0.06 1.41 11.17 84.73 0.95 2.36 16 14 N -0.47 -12.20 9.22 -183.71 -1.69 -13.89 16 15 C 0.16 5.52 2.48 45.02 0.11 5.63 16 16 C -0.11 -3.89 4.73 30.68 0.15 -3.74 16 17 C 0.14 6.18 6.52 86.36 0.56 6.74 16 18 N -0.61 -30.97 2.99 -699.09 -2.09 -33.06 16 19 C -0.26 -14.46 9.58 84.03 0.81 -13.65 16 20 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 21 C -0.05 -2.86 4.92 84.86 0.42 -2.45 16 22 N -0.94 -56.29 11.19 21.65 0.24 -56.05 16 23 Si 0.97 44.65 29.59 68.60 2.03 46.68 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 C 0.18 9.02 5.30 86.36 0.46 9.48 16 28 C -0.13 -4.84 5.31 30.67 0.16 -4.68 16 29 H 0.24 2.17 7.80 -4.43 -0.03 2.13 16 30 H 0.10 2.04 6.46 -2.39 -0.02 2.03 16 31 H 0.14 1.39 6.44 -2.39 -0.02 1.38 16 32 H 0.14 1.57 7.40 -2.39 -0.02 1.55 16 33 H 0.14 1.34 7.68 -2.39 -0.02 1.32 16 34 H 0.18 0.95 7.95 -2.91 -0.02 0.92 16 35 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.17 3.36 8.06 -2.91 -0.02 3.33 16 37 H 0.06 2.66 6.90 -2.39 -0.02 2.65 16 38 H 0.07 2.34 7.02 -2.39 -0.02 2.32 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 41 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 43 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 44 H 0.06 3.39 6.06 -2.39 -0.01 3.38 16 45 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 46 H 0.07 2.52 6.72 -2.39 -0.02 2.50 16 Total: -1.00 -78.50 383.45 5.80 -72.69 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.00 Total: 12.29 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 7.51 Total: 12.95 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -5.46 Total: -120.79 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.04 Total: -21.93 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -78.50 5.80 -72.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733368881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.367 kcal (2) G-P(sol) polarization free energy of solvation -78.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds