Wall clock time and date at job start Wed Apr 1 2020 04:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46463 * 2 1 4 4 N 1.46506 * 109.46685 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99905 * 275.30633 * 4 3 2 6 6 H 1.07994 * 119.99889 * 37.57723 * 5 4 3 7 7 C 1.38806 * 119.99921 * 217.57467 * 5 4 3 8 8 N 1.31621 * 120.00414 * 21.43732 * 7 5 4 9 9 Si 1.86800 * 119.99942 * 201.43026 * 7 5 4 10 10 H 1.48492 * 109.47276 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46859 * 120.00591 * 9 7 5 12 12 H 1.48498 * 109.47477 * 239.99948 * 9 7 5 13 13 C 1.46506 * 120.00241 * 95.30711 * 4 3 2 14 14 C 1.52997 * 109.46758 * 270.00200 * 13 4 3 15 15 N 1.46506 * 109.46758 * 180.02562 * 14 13 4 16 16 C 1.34773 * 119.99718 * 180.27338 * 15 14 13 17 17 O 1.21599 * 120.00355 * 359.72447 * 16 15 14 18 18 C 1.47454 * 119.99640 * 179.72200 * 16 15 14 19 19 C 1.38705 * 120.31685 * 0.02562 * 18 16 15 20 20 C 1.39095 * 120.69600 * 179.97438 * 19 18 16 21 21 F 1.35100 * 119.50116 * 179.97438 * 20 19 18 22 22 C 1.36539 * 121.00292 * 359.97438 * 20 19 18 23 23 C 1.40408 * 120.07164 * 0.02562 * 22 20 19 24 24 C 1.40812 * 121.24362 * 179.97438 * 23 22 20 25 25 C 1.36622 * 118.16043 * 180.02562 * 24 23 22 26 26 C 1.39238 * 119.90777 * 0.02562 * 25 24 23 27 27 N 1.31223 * 121.69447 * 359.97438 * 26 25 24 28 28 C 1.33361 * 121.35824 * 359.73341 * 27 26 25 29 29 H 1.08994 * 109.47432 * 299.99917 * 1 2 3 30 30 H 1.08999 * 109.47174 * 60.00526 * 1 2 3 31 31 H 1.09005 * 109.46840 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47229 * 239.99569 * 2 1 3 33 33 H 1.08999 * 109.47174 * 119.99474 * 2 1 3 34 34 H 1.08993 * 109.47751 * 59.99888 * 3 2 1 35 35 H 1.09005 * 109.47406 * 299.99449 * 3 2 1 36 36 H 0.96993 * 120.00508 * 179.97438 * 8 7 5 37 37 H 1.08994 * 109.46919 * 149.99770 * 13 4 3 38 38 H 1.08998 * 109.46483 * 29.99829 * 13 4 3 39 39 H 1.08994 * 109.47757 * 60.00082 * 14 13 4 40 40 H 1.08998 * 109.47321 * 299.99116 * 14 13 4 41 41 H 0.97005 * 119.99692 * 359.97438 * 15 14 13 42 42 H 1.07996 * 119.65287 * 359.95224 * 19 18 16 43 43 H 1.08000 * 119.96335 * 180.02562 * 22 20 19 44 44 H 1.08002 * 120.91953 * 0.04371 * 24 23 22 45 45 H 1.07997 * 120.05046 * 180.02562 * 25 24 23 46 46 H 1.08007 * 119.15111 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3328 1.1799 6 1 3.8185 0.6872 1.9619 7 6 5.3623 2.0512 1.3715 8 7 5.6024 3.1240 0.6478 9 14 6.5989 1.4954 2.6565 10 1 6.0969 0.2706 3.3295 11 1 7.8976 1.2015 1.9990 12 1 6.7858 2.5720 3.6620 13 6 4.2370 1.5602 -1.2642 14 6 4.4917 0.1648 -1.8377 15 7 5.2243 0.2823 -3.1010 16 6 5.5562 -0.8255 -3.7930 17 8 5.2521 -1.9228 -3.3664 18 6 6.2882 -0.7069 -5.0675 19 6 6.6388 0.5415 -5.5600 20 6 7.3297 0.6625 -6.7611 21 9 7.6587 1.8904 -7.2186 22 6 7.6806 -0.4408 -7.4849 23 6 7.3444 -1.7227 -7.0211 24 6 7.6934 -2.8772 -7.7478 25 6 7.3343 -4.0929 -7.2382 26 6 6.6422 -4.1631 -6.0321 27 7 6.3192 -3.0842 -5.3587 28 6 6.6453 -1.8681 -5.7985 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6766 1.9564 -0.8901 36 1 6.4213 3.6263 0.7819 37 1 5.1893 2.0598 -1.0872 38 1 3.6475 2.1421 -1.9727 39 1 3.5393 -0.3348 -2.0147 40 1 5.0812 -0.4172 -1.1292 41 1 5.4666 1.1578 -3.4414 42 1 6.3722 1.4289 -5.0052 43 1 8.2173 -0.3273 -8.4152 44 1 8.2304 -2.8036 -8.6819 45 1 7.5869 -4.9982 -7.7702 46 1 6.3640 -5.1306 -5.6408 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753148922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:47 Heat of formation + Delta-G solvation = -22.692412 kcal Electronic energy + Delta-G solvation = -29478.138551 eV Core-core repulsion = 25282.158928 eV Total energy + Delta-G solvation = -4195.979623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -50.03326 -42.05762 -40.40284 -38.25984 -37.78403 -35.76408 -34.63580 -34.54997 -32.71059 -31.70086 -31.12509 -29.59075 -27.35436 -26.10776 -25.30942 -24.54470 -24.04897 -22.58619 -21.95330 -21.51357 -19.80308 -19.13338 -18.55092 -18.46525 -17.39868 -17.03434 -16.85569 -16.77992 -16.43179 -16.34246 -16.02588 -15.88969 -15.67044 -15.38936 -15.14030 -14.81178 -14.57270 -14.30423 -14.25087 -14.15362 -13.97117 -13.37078 -13.34954 -13.09694 -12.94441 -12.68333 -12.65658 -12.51266 -12.48213 -12.22671 -12.04669 -11.88516 -11.70643 -11.60710 -11.36072 -11.16114 -10.55028 -10.21696 -10.08533 -9.87658 -9.38411 -8.60786 -7.87365 -5.50169 -1.06048 -0.40217 0.66148 1.40648 1.45070 1.45724 1.54882 2.04123 2.12823 2.48424 2.94181 3.01048 3.17226 3.20429 3.35840 3.56257 3.70993 3.74252 3.91986 3.99140 4.16743 4.21684 4.28855 4.35252 4.36963 4.50207 4.51320 4.59442 4.66392 4.69355 4.71797 4.81523 4.84718 4.98056 5.00209 5.14330 5.15706 5.21638 5.25320 5.35703 5.41085 5.42616 5.61708 5.64372 5.69623 5.72068 6.42868 6.53312 6.99835 7.12723 7.22271 7.80799 8.33220 9.08521 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.002841 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.768570 B = 9853.105465 C =10603.921411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.269 4.269 6 H 0.051 0.949 7 C -0.027 4.027 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.285 1.285 13 C 0.146 3.854 14 C 0.123 3.877 15 N -0.712 5.712 16 C 0.544 3.456 17 O -0.545 6.545 18 C -0.105 4.105 19 C -0.087 4.087 20 C 0.084 3.916 21 F -0.132 7.132 22 C -0.083 4.083 23 C -0.102 4.102 24 C -0.047 4.047 25 C -0.161 4.161 26 C 0.124 3.876 27 N -0.496 5.496 28 C 0.127 3.873 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.049 0.951 36 H 0.254 0.746 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.030 0.970 41 H 0.407 0.593 42 H 0.159 0.841 43 H 0.188 0.812 44 H 0.190 0.810 45 H 0.183 0.817 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 -9.094 -22.979 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.399 4.399 6 H 0.069 0.931 7 C -0.225 4.225 8 N -0.553 5.553 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.211 1.211 13 C 0.018 3.982 14 C -0.003 4.003 15 N -0.365 5.365 16 C 0.331 3.669 17 O -0.422 6.422 18 C -0.109 4.109 19 C -0.108 4.108 20 C 0.064 3.936 21 F -0.111 7.111 22 C -0.102 4.102 23 C -0.104 4.104 24 C -0.072 4.072 25 C -0.180 4.180 26 C -0.047 4.047 27 N -0.204 5.204 28 C 0.004 3.996 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.244 0.756 42 H 0.177 0.823 43 H 0.206 0.794 44 H 0.207 0.793 45 H 0.201 0.799 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.666 -9.637 -21.794 24.110 hybrid contribution 1.173 0.565 0.369 1.353 sum 4.839 -9.072 -21.425 23.764 Atomic orbital electron populations 1.21652 0.94184 1.01772 1.02032 1.22016 0.96484 0.98808 1.00184 1.21054 0.83281 0.94493 0.99135 1.43840 1.00891 1.85054 1.01923 1.19171 1.06242 1.19844 0.94664 0.93109 1.25736 1.02055 0.94746 1.00010 1.70080 1.25885 1.15515 1.43781 0.85513 0.79374 0.78050 0.79351 1.19813 1.21733 1.21135 1.20918 0.99284 0.91708 0.86250 1.21942 0.94209 1.01119 0.83024 1.45928 1.57990 1.09025 1.23574 1.18334 0.79760 0.84359 0.84429 1.90805 1.54454 1.27209 1.69774 1.19681 1.02703 0.92886 0.95639 1.21577 0.96204 0.97597 0.95407 1.17100 1.01202 0.80923 0.94354 1.91558 1.90661 1.40492 1.88346 1.21462 0.98503 0.89067 1.01176 1.18773 1.00566 0.95971 0.95093 1.21970 0.95527 0.89893 0.99814 1.22396 0.98407 1.00688 0.96502 1.23766 0.91794 0.97380 0.91795 1.68280 1.19576 0.98660 1.33837 1.18874 0.96455 0.91433 0.92791 0.92477 0.92094 0.92315 0.93803 0.94320 0.94473 0.93226 0.93691 0.90765 0.93642 0.93318 0.95175 0.75590 0.82345 0.79432 0.79314 0.79931 0.80610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.26 16 2 C -0.14 -5.06 6.23 30.60 0.19 -4.87 16 3 C 0.15 6.14 5.72 86.38 0.49 6.63 16 4 N -0.60 -29.66 2.43 -702.00 -1.71 -31.37 16 5 C -0.27 -14.85 9.45 84.03 0.79 -14.05 16 6 H 0.05 2.86 7.92 -2.91 -0.02 2.84 16 7 C -0.03 -1.51 4.95 84.86 0.42 -1.09 16 8 N -0.91 -51.59 11.47 21.65 0.25 -51.34 16 9 Si 0.95 45.21 29.60 68.60 2.03 47.24 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 C 0.15 6.66 5.45 86.38 0.47 7.13 16 14 C 0.12 5.33 6.00 86.38 0.52 5.85 16 15 N -0.71 -25.98 5.51 -466.35 -2.57 -28.55 16 16 C 0.54 20.96 7.76 86.67 0.67 21.63 16 17 O -0.54 -25.39 15.18 -4.03 -0.06 -25.45 16 18 C -0.10 -3.22 5.90 -19.86 -0.12 -3.34 16 19 C -0.09 -2.05 9.49 22.59 0.21 -1.84 16 20 C 0.08 1.62 7.22 22.08 0.16 1.78 16 21 F -0.13 -2.55 17.24 44.97 0.78 -1.77 16 22 C -0.08 -1.24 9.71 22.40 0.22 -1.02 16 23 C -0.10 -1.92 5.74 -21.30 -0.12 -2.04 16 24 C -0.05 -0.52 9.89 22.52 0.22 -0.29 16 25 C -0.16 -1.86 10.03 22.13 0.22 -1.64 16 26 C 0.12 2.54 11.15 85.02 0.95 3.49 16 27 N -0.50 -15.58 8.43 -187.95 -1.58 -17.16 16 28 C 0.13 3.68 6.61 40.61 0.27 3.94 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.04 1.71 6.64 -2.39 -0.02 1.69 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 35 H 0.05 1.92 7.83 -2.38 -0.02 1.90 16 36 H 0.25 13.87 8.31 -92.71 -0.77 13.09 16 37 H 0.07 3.82 5.52 -2.39 -0.01 3.81 16 38 H 0.05 1.90 7.86 -2.39 -0.02 1.88 16 39 H 0.05 2.15 6.64 -2.39 -0.02 2.13 16 40 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.41 12.33 6.49 -92.70 -0.60 11.73 16 42 H 0.16 3.25 6.36 -2.91 -0.02 3.23 16 43 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 44 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 45 H 0.18 0.52 8.06 -2.91 -0.02 0.50 16 46 H 0.18 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -76.94 387.01 3.83 -73.11 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.41 Total: 18.28 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 6.29 Total: 17.02 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -5.61 Total: -128.42 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.06 Total: -25.45 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.78 Total: -1.77 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -76.94 3.83 -73.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753148922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.418 kcal (2) G-P(sol) polarization free energy of solvation -76.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds