Wall clock time and date at job start Wed Apr 1 2020 05:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.49399 * 2 1 4 4 C 1.53622 * 109.43308 * 120.23058 * 2 1 3 5 5 N 1.46920 * 108.54182 * 174.72781 * 4 2 1 6 6 C 1.36938 * 120.63045 * 126.37020 * 5 4 2 7 7 H 1.07992 * 120.00204 * 332.17553 * 6 5 4 8 8 C 1.38815 * 119.99900 * 152.17953 * 6 5 4 9 9 N 1.31618 * 120.00254 * 342.37015 * 8 6 5 10 10 Si 1.86800 * 119.99943 * 162.64390 * 8 6 5 11 11 H 1.48500 * 109.46912 * 89.99816 * 10 8 6 12 12 H 1.48500 * 109.47256 * 210.00183 * 10 8 6 13 13 H 1.48504 * 109.46959 * 330.00175 * 10 8 6 14 14 C 1.46929 * 118.73799 * 306.08918 * 5 4 2 15 15 C 1.53187 * 108.77314 * 53.86216 * 14 5 4 16 16 C 1.53036 * 109.31796 * 305.36619 * 15 14 5 17 17 H 1.08995 * 109.46410 * 181.38568 * 16 15 14 18 18 N 1.46506 * 109.45960 * 301.35976 * 16 15 14 19 19 C 1.34774 * 119.99721 * 275.00135 * 18 16 15 20 20 O 1.21571 * 120.00138 * 359.97438 * 19 18 16 21 21 C 1.47676 * 119.99608 * 180.02562 * 19 18 16 22 22 C 1.39908 * 120.39536 * 359.72046 * 21 19 18 23 23 N 1.31449 * 121.14438 * 179.68255 * 22 21 19 24 24 C 1.32476 * 121.80354 * 0.62223 * 23 22 21 25 25 N 1.37883 * 133.44571 * 179.68681 * 24 23 22 26 26 H 0.97000 * 126.24811 * 0.02562 * 25 24 23 27 27 C 1.36509 * 107.49408 * 179.97438 * 25 24 23 28 28 O 1.35271 * 125.02310 * 179.97438 * 27 25 24 29 29 N 1.30716 * 109.95916 * 0.02562 * 27 25 24 30 30 C 1.35897 * 109.39852 * 359.97438 * 29 27 25 31 31 C 1.39411 * 133.63322 * 179.97438 * 30 29 27 32 32 H 1.09002 * 109.47122 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47382 * 300.05713 * 1 2 3 34 34 H 1.09003 * 109.47321 * 60.05662 * 1 2 3 35 35 H 1.09000 * 109.73931 * 54.98354 * 4 2 1 36 36 H 1.09004 * 109.66058 * 294.41613 * 4 2 1 37 37 H 0.96994 * 120.00406 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.58909 * 173.65261 * 14 5 4 39 39 H 1.09004 * 109.58603 * 294.07939 * 14 5 4 40 40 H 1.09004 * 109.49944 * 65.32101 * 15 14 5 41 41 H 1.09007 * 109.49877 * 185.37780 * 15 14 5 42 42 H 0.96994 * 119.99948 * 94.99493 * 18 16 15 43 43 H 1.08001 * 119.42609 * 359.97438 * 22 21 19 44 44 H 0.96703 * 114.00050 * 89.99300 * 28 27 25 45 45 H 1.08001 * 120.97011 * 359.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0411 -0.7294 1.2517 5 7 3.5046 -0.8295 1.1692 6 6 4.2936 -0.3801 2.1943 7 1 3.9459 0.4180 2.8333 8 6 5.5403 -0.9503 2.4119 9 7 5.8289 -2.1220 1.8863 10 14 6.8058 -0.0584 3.4571 11 1 6.6484 -0.4627 4.8773 12 1 8.1706 -0.4110 2.9903 13 1 6.6041 1.4078 3.3346 14 6 4.1053 -1.4266 -0.0314 15 6 3.5708 -0.6945 -1.2663 16 6 2.0408 -0.7226 -1.2487 17 1 1.6581 -0.2237 -2.1390 18 7 1.5783 -2.1126 -1.2313 19 6 1.4489 -2.7942 -2.3868 20 8 1.7156 -2.2554 -3.4435 21 6 0.9822 -4.1951 -2.3693 22 6 0.6776 -4.8247 -1.1575 23 7 0.2551 -6.0690 -1.1253 24 6 0.1100 -6.7859 -2.2298 25 7 -0.2992 -8.0799 -2.4735 26 1 -0.5717 -8.7303 -1.8074 27 6 -0.2520 -8.2780 -3.8233 28 8 -0.5814 -9.4301 -4.4509 29 7 0.1598 -7.1901 -4.4197 30 6 0.4008 -6.2290 -3.4897 31 6 0.8458 -4.9099 -3.5626 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5147 0.8894 34 1 -0.3634 0.5130 -0.8905 35 1 1.6085 -1.7288 1.2978 36 1 1.7630 -0.1670 2.1431 37 1 6.6999 -2.5207 2.0387 38 1 5.1896 -1.3245 0.0131 39 1 3.8375 -2.4817 -0.0878 40 1 3.9159 0.3394 -1.2541 41 1 3.9339 -1.1885 -2.1676 42 1 1.3653 -2.5423 -0.3882 43 1 0.7870 -4.2773 -0.2330 44 1 -1.5132 -9.4880 -4.7032 45 1 1.0785 -4.4535 -4.5134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942200635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:25 Heat of formation + Delta-G solvation = 13.597155 kcal Electronic energy + Delta-G solvation = -30296.691583 eV Core-core repulsion = 26122.205555 eV Total energy + Delta-G solvation = -4174.486028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.59323 -41.42500 -39.93371 -38.96088 -37.89738 -35.98481 -34.92942 -34.03682 -32.85640 -32.63342 -31.78027 -30.33620 -27.33200 -27.07245 -25.45955 -24.85780 -23.69778 -23.07182 -22.71389 -21.96031 -20.45718 -20.04399 -19.48395 -19.21539 -18.60716 -17.78058 -17.46583 -16.85050 -16.80850 -16.45342 -16.12312 -15.73309 -15.55206 -15.33623 -15.21117 -14.82312 -14.68175 -14.52713 -14.26759 -14.12358 -13.48737 -13.43628 -13.40879 -13.10945 -12.90764 -12.65836 -12.47554 -12.44348 -12.31013 -12.18427 -12.15996 -11.91163 -11.60971 -11.43083 -11.23352 -11.03314 -10.48665 -10.45907 -10.23535 -9.93570 -9.70103 -8.61210 -7.82750 -5.26386 -0.54354 -0.41165 0.94713 1.35248 1.47856 1.50968 1.59040 1.76397 2.03303 2.47957 2.54663 2.66773 3.06556 3.32442 3.44107 3.59236 3.68512 3.72865 3.75514 3.85953 4.09580 4.14109 4.20621 4.47129 4.49072 4.65996 4.72266 4.77762 4.80983 4.84778 4.89745 5.05310 5.09137 5.16445 5.17385 5.24515 5.38576 5.49729 5.56171 5.62435 5.66494 5.70040 5.80628 6.33534 6.41356 6.43259 6.53148 6.62994 7.17485 7.19611 7.92164 8.42289 9.22495 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.002675 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.154998 B =10462.840045 C =11315.962022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 H 0.078 0.922 4 C 0.147 3.853 5 N -0.607 5.607 6 C -0.256 4.256 7 H 0.068 0.932 8 C -0.050 4.050 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.285 1.285 12 H -0.298 1.298 13 H -0.272 1.272 14 C 0.186 3.814 15 C -0.144 4.144 16 C 0.168 3.832 17 H 0.082 0.918 18 N -0.697 5.697 19 C 0.571 3.429 20 O -0.571 6.571 21 C -0.193 4.193 22 C 0.181 3.819 23 N -0.486 5.486 24 C 0.261 3.739 25 N -0.571 5.571 26 H 0.445 0.555 27 C 0.489 3.511 28 O -0.431 6.431 29 N -0.505 5.505 30 C -0.008 4.008 31 C 0.040 3.960 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.027 0.973 36 H 0.059 0.941 37 H 0.247 0.753 38 H 0.045 0.955 39 H 0.004 0.996 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.406 0.594 43 H 0.189 0.811 44 H 0.441 0.559 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.662 -9.899 -8.460 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 H 0.097 0.903 4 C 0.022 3.978 5 N -0.330 5.330 6 C -0.386 4.386 7 H 0.086 0.914 8 C -0.245 4.245 9 N -0.578 5.578 10 Si 0.788 3.212 11 H -0.212 1.212 12 H -0.225 1.225 13 H -0.197 1.197 14 C 0.060 3.940 15 C -0.184 4.184 16 C 0.064 3.936 17 H 0.100 0.900 18 N -0.348 5.348 19 C 0.358 3.642 20 O -0.452 6.452 21 C -0.201 4.201 22 C 0.013 3.987 23 N -0.198 5.198 24 C 0.024 3.976 25 N -0.200 5.200 26 H 0.289 0.711 27 C 0.183 3.817 28 O -0.237 6.237 29 N -0.238 5.238 30 C -0.128 4.128 31 C 0.012 3.988 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.022 0.978 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.244 0.756 43 H 0.206 0.794 44 H 0.306 0.694 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.915 -10.169 -9.296 22.601 hybrid contribution 0.718 -0.144 1.156 1.368 sum -17.197 -10.314 -8.141 21.642 Atomic orbital electron populations 1.21716 0.92699 1.02448 1.02412 1.21882 0.96885 0.99714 0.94172 0.90334 1.21212 0.83310 0.97178 0.96133 1.44280 1.01132 1.71561 1.16009 1.19471 0.98613 1.12041 1.08510 0.91383 1.25691 1.01717 0.96089 1.01024 1.70172 1.21747 1.15950 1.49903 0.85406 0.78576 0.78764 0.78463 1.21211 1.22514 1.19656 1.20424 0.97111 0.92627 0.83835 1.22405 0.96475 1.01093 0.98452 1.20816 0.92859 0.80957 0.98987 0.89952 1.45918 1.66242 1.14088 1.08557 1.17922 0.77067 0.85285 0.83914 1.90750 1.52450 1.70354 1.31626 1.20561 1.08924 0.95602 0.94992 1.23022 0.89933 0.88255 0.97510 1.66465 1.17184 1.07542 1.28641 1.18904 1.00077 0.87047 0.91611 1.42962 1.56908 1.10702 1.09465 0.71077 1.20199 0.95944 0.87242 0.78365 1.84857 1.36563 1.28284 1.74030 1.70715 1.22811 0.98949 1.31289 1.19408 1.07496 0.95516 0.90354 1.20854 0.89272 0.89386 0.99297 0.92082 0.91395 0.92109 0.95511 0.92215 0.94426 0.93646 0.97826 0.91916 0.93293 0.75558 0.79424 0.69437 0.82804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.05 71.98 0.65 -2.22 16 2 C -0.11 -3.04 2.69 -10.57 -0.03 -3.07 16 3 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 4 C 0.15 5.21 5.53 86.51 0.48 5.68 16 5 N -0.61 -28.16 2.99 -698.28 -2.09 -30.25 16 6 C -0.26 -13.42 9.59 84.03 0.81 -12.61 16 7 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 8 C -0.05 -2.71 4.90 84.86 0.42 -2.30 16 9 N -0.93 -54.12 11.19 21.65 0.24 -53.88 16 10 Si 0.96 44.29 29.59 68.60 2.03 46.32 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 C 0.19 8.66 5.05 86.36 0.44 9.10 16 15 C -0.14 -5.54 5.77 30.67 0.18 -5.36 16 16 C 0.17 5.26 2.21 45.02 0.10 5.36 16 17 H 0.08 2.56 7.57 -2.39 -0.02 2.54 16 18 N -0.70 -19.99 3.55 -445.44 -1.58 -21.57 16 19 C 0.57 17.42 7.74 86.74 0.67 18.09 16 20 O -0.57 -20.93 16.06 -3.94 -0.06 -20.99 16 21 C -0.19 -5.11 5.89 -20.01 -0.12 -5.23 16 22 C 0.18 4.29 10.69 85.15 0.91 5.20 16 23 N -0.49 -11.75 10.36 -191.60 -1.99 -13.74 16 24 C 0.26 6.01 8.45 133.83 1.13 7.14 16 25 N -0.57 -8.78 6.23 -306.99 -1.91 -10.69 16 26 H 0.45 3.79 8.96 -92.71 -0.83 2.95 16 27 C 0.49 8.02 9.39 179.73 1.69 9.71 16 28 O -0.43 -3.75 13.63 -85.55 -1.17 -4.92 16 29 N -0.51 -12.10 11.32 -306.40 -3.47 -15.56 16 30 C -0.01 -0.21 7.22 39.42 0.28 0.07 16 31 C 0.04 1.06 9.75 22.92 0.22 1.29 16 32 H 0.06 1.19 7.54 -2.39 -0.02 1.18 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.03 0.89 6.63 -2.39 -0.02 0.88 16 36 H 0.06 2.09 7.93 -2.39 -0.02 2.07 16 37 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 38 H 0.05 2.49 6.03 -2.39 -0.01 2.47 16 39 H 0.00 0.18 7.74 -2.38 -0.02 0.16 16 40 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 41 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 42 H 0.41 10.56 4.75 -92.71 -0.44 10.12 16 43 H 0.19 3.67 6.39 -2.91 -0.02 3.65 16 44 H 0.44 -1.49 9.06 -74.05 -0.67 -2.16 16 45 H 0.15 4.13 7.72 -2.91 -0.02 4.11 16 Total: -1.00 -74.51 367.41 -3.02 -77.53 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.86 Total: 16.92 kcal Atomic # 6 Polarization: 23.01 SS G_CDS: 7.83 Total: 30.84 kcal Atomic # 7 Polarization: -134.90 SS G_CDS: -10.79 Total: -145.69 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -1.23 Total: -25.91 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -74.51 -3.02 -77.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942200635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.126 kcal (2) G-P(sol) polarization free energy of solvation -74.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds