Wall clock time and date at job start Wed Apr 1 2020 05:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.49683 * 2 1 4 4 C 1.53189 * 109.49870 * 239.93390 * 2 1 3 5 5 N 1.46930 * 108.77394 * 185.38051 * 4 2 1 6 6 C 1.36941 * 120.62921 * 233.58544 * 5 4 2 7 7 H 1.08001 * 119.99840 * 27.70078 * 6 5 4 8 8 C 1.38808 * 119.99743 * 207.69585 * 6 5 4 9 9 N 1.31615 * 119.99919 * 17.36296 * 8 6 5 10 10 Si 1.86803 * 119.99890 * 197.35495 * 8 6 5 11 11 H 1.48502 * 109.46880 * 60.00728 * 10 8 6 12 12 H 1.48501 * 109.47157 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47242 * 300.00464 * 10 8 6 14 14 C 1.46926 * 118.73909 * 53.61074 * 5 4 2 15 15 C 1.53194 * 108.77264 * 306.39072 * 14 5 4 16 16 C 1.53037 * 109.31546 * 54.63474 * 15 14 5 17 17 H 1.09001 * 109.45836 * 58.65294 * 16 15 14 18 18 N 1.46496 * 109.45033 * 178.62210 * 16 15 14 19 19 C 1.34777 * 119.99923 * 275.06065 * 18 16 15 20 20 O 1.21562 * 120.00052 * 0.02562 * 19 18 16 21 21 C 1.47858 * 120.00246 * 179.97438 * 19 18 16 22 22 C 1.39720 * 119.43915 * 180.02562 * 21 19 18 23 23 C 1.36992 * 119.59168 * 179.97438 * 22 21 19 24 24 C 1.39902 * 118.37029 * 359.97438 * 23 22 21 25 25 N 1.35420 * 133.68238 * 180.02562 * 24 23 22 26 26 C 1.30931 * 109.56450 * 179.97438 * 25 24 23 27 27 O 1.35179 * 124.99846 * 179.97438 * 26 25 24 28 28 N 1.36385 * 110.00920 * 0.02562 * 26 25 24 29 29 H 0.96998 * 126.32411 * 180.02562 * 28 26 25 30 30 C 1.38256 * 107.35959 * 359.97438 * 28 26 25 31 31 N 1.31764 * 133.71716 * 180.32602 * 30 28 26 32 32 H 1.08998 * 109.46754 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47443 * 300.07015 * 1 2 3 34 34 H 1.09005 * 109.46775 * 60.06653 * 1 2 3 35 35 H 1.08999 * 109.58397 * 65.59810 * 4 2 1 36 36 H 1.08994 * 109.59045 * 305.16961 * 4 2 1 37 37 H 0.97007 * 119.99487 * 179.97438 * 9 8 6 38 38 H 1.08996 * 109.58752 * 66.17390 * 14 5 4 39 39 H 1.08998 * 109.58713 * 186.60679 * 14 5 4 40 40 H 1.09001 * 109.49473 * 174.58845 * 15 14 5 41 41 H 1.09007 * 109.49602 * 294.68211 * 15 14 5 42 42 H 0.96997 * 120.00651 * 95.06169 * 18 16 15 43 43 H 1.08006 * 120.20200 * 359.97438 * 22 21 19 44 44 H 1.08000 * 120.81621 * 179.97438 * 23 22 21 45 45 H 0.96701 * 114.00697 * 270.01160 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 -1.2497 5 7 3.5048 -0.8281 -1.1701 6 6 4.2932 -0.3778 -2.1952 7 1 3.9459 0.4220 -2.8324 8 6 5.5390 -0.9493 -2.4151 9 7 5.8284 -2.1198 -1.8875 10 14 6.8045 -0.0570 -3.4600 11 1 7.1167 1.2577 -2.8441 12 1 8.0429 -0.8726 -3.5414 13 1 6.2599 0.1528 -4.8255 14 6 4.1060 -1.4255 0.0301 15 6 3.5715 -0.6941 1.2655 16 6 2.0415 -0.7229 1.2482 17 1 1.6979 -1.7572 1.2351 18 7 1.5274 -0.0529 2.4452 19 6 1.3999 -0.7382 3.5988 20 8 1.7120 -1.9121 3.6460 21 6 0.8817 -0.0619 4.8071 22 6 0.7548 -0.7834 5.9969 23 6 0.2755 -0.1598 7.1184 24 6 -0.0728 1.1923 7.0298 25 7 -0.5630 2.0919 7.9154 26 6 -0.7193 3.2493 7.3236 27 8 -1.1907 4.3674 7.9194 28 7 -0.3375 3.1609 6.0172 29 1 -0.3553 3.8774 5.3636 30 6 0.0806 1.8616 5.7967 31 7 0.5503 1.2223 4.7447 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5149 0.8893 34 1 -0.3633 0.5128 -0.8906 35 1 1.7634 -0.1576 -2.1389 36 1 1.6058 -1.7214 -1.2982 37 1 6.6988 -2.5193 -2.0416 38 1 3.8388 -2.4807 0.0861 39 1 5.1902 -1.3228 -0.0147 40 1 3.9345 -1.1887 2.1664 41 1 3.9161 0.3400 1.2535 42 1 1.2788 0.8839 2.4078 43 1 1.0330 -1.8264 6.0320 44 1 0.1690 -0.6986 8.0483 45 1 -2.1513 4.4660 7.8670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942582427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:45 Heat of formation + Delta-G solvation = 10.671837 kcal Electronic energy + Delta-G solvation = -29779.236157 eV Core-core repulsion = 25604.623277 eV Total energy + Delta-G solvation = -4174.612879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.55537 -41.36020 -39.93089 -39.02125 -37.84443 -36.23940 -35.02059 -34.18775 -32.92784 -32.52390 -31.76845 -30.50795 -27.41275 -27.06929 -25.55459 -24.56910 -23.69792 -22.92360 -22.64272 -21.78862 -21.05029 -20.38335 -19.40561 -18.75579 -18.54757 -18.44297 -17.34520 -17.09813 -16.71746 -16.29345 -16.20233 -15.70617 -15.61435 -15.44883 -15.21334 -14.72580 -14.55137 -14.40341 -14.38671 -14.11945 -13.61647 -13.32747 -13.24133 -13.04627 -12.98607 -12.72696 -12.57186 -12.46765 -12.33804 -12.25755 -12.07232 -12.04137 -11.68454 -11.57446 -11.41103 -11.15478 -10.55227 -10.49324 -10.14562 -10.06134 -9.60366 -8.70464 -7.86620 -5.32273 -0.81029 0.03161 0.91463 1.17793 1.47668 1.50362 1.57065 1.77772 2.01057 2.41335 2.52035 2.70113 3.04195 3.28166 3.30993 3.63694 3.73880 3.75759 3.81283 3.90683 4.03838 4.16747 4.38735 4.48391 4.52084 4.60912 4.72042 4.73779 4.85631 4.87149 4.89958 4.93719 5.02227 5.10928 5.14524 5.29240 5.32339 5.39552 5.50277 5.52020 5.64058 5.65565 5.71237 6.24410 6.37588 6.38895 6.52839 6.64501 7.12458 7.14027 7.85031 8.37663 9.20206 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019011 B = 0.002250 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.470074 B =12438.989104 C =12748.359671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 H 0.076 0.924 4 C 0.150 3.850 5 N -0.610 5.610 6 C -0.262 4.262 7 H 0.072 0.928 8 C -0.053 4.053 9 N -0.936 5.936 10 Si 0.968 3.032 11 H -0.278 1.278 12 H -0.297 1.297 13 H -0.273 1.273 14 C 0.183 3.817 15 C -0.133 4.133 16 C 0.167 3.833 17 H 0.066 0.934 18 N -0.689 5.689 19 C 0.570 3.430 20 O -0.561 6.561 21 C 0.107 3.893 22 C -0.117 4.117 23 C -0.021 4.021 24 C 0.028 3.972 25 N -0.511 5.511 26 C 0.498 3.502 27 O -0.433 6.433 28 N -0.574 5.574 29 H 0.444 0.556 30 C 0.233 3.767 31 N -0.454 5.454 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.013 0.987 37 H 0.250 0.750 38 H -0.007 1.007 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.415 0.585 43 H 0.167 0.833 44 H 0.179 0.821 45 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.655 12.970 19.205 29.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 H 0.095 0.905 4 C 0.024 3.976 5 N -0.333 5.333 6 C -0.392 4.392 7 H 0.090 0.910 8 C -0.248 4.248 9 N -0.582 5.582 10 Si 0.796 3.204 11 H -0.204 1.204 12 H -0.223 1.223 13 H -0.199 1.199 14 C 0.056 3.944 15 C -0.173 4.173 16 C 0.063 3.937 17 H 0.084 0.916 18 N -0.339 5.339 19 C 0.355 3.645 20 O -0.439 6.439 21 C -0.040 4.040 22 C -0.141 4.141 23 C -0.049 4.049 24 C -0.094 4.094 25 N -0.244 5.244 26 C 0.192 3.808 27 O -0.240 6.240 28 N -0.203 5.203 29 H 0.288 0.712 30 C -0.006 4.006 31 N -0.170 5.170 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.031 0.969 37 H 0.059 0.941 38 H 0.011 0.989 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.253 0.747 43 H 0.184 0.816 44 H 0.196 0.804 45 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges -17.893 12.571 19.444 29.262 hybrid contribution 0.604 0.602 -1.150 1.432 sum -17.289 13.173 18.295 28.411 Atomic orbital electron populations 1.21706 0.92780 1.02006 1.02628 1.21764 0.96830 0.99800 0.93676 0.90547 1.21075 0.83474 0.96896 0.96107 1.44345 1.01132 1.71439 1.16338 1.19505 0.98763 1.12181 1.08767 0.91025 1.25839 1.01875 0.96043 1.01082 1.70198 1.22032 1.16141 1.49863 0.85332 0.78284 0.77812 0.78962 1.20412 1.22314 1.19863 1.20482 0.97694 0.92249 0.83961 1.22344 0.95832 1.00776 0.98350 1.20788 0.92670 0.96553 0.83711 0.91603 1.45908 1.63702 1.15226 1.09035 1.17990 0.77811 0.85683 0.83004 1.90815 1.51608 1.16710 1.84740 1.20727 1.00186 0.88487 0.94613 1.21700 0.98715 1.02788 0.90865 1.20731 0.93930 0.90075 1.00129 1.19964 1.02999 0.96019 0.90430 1.70672 1.23949 0.98693 1.31053 1.20307 0.94521 0.87194 0.78757 1.84818 1.32014 1.33653 1.73488 1.43008 1.55580 1.09555 1.12186 0.71244 1.18579 1.02792 0.86853 0.92422 1.66062 1.11867 1.08875 1.30178 0.93162 0.91550 0.91087 0.91648 0.96855 0.94143 0.98853 0.92529 0.93077 0.92372 0.74728 0.81555 0.80388 0.69299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.03 71.98 0.65 -2.59 16 2 C -0.10 -3.18 2.46 -10.72 -0.03 -3.21 16 3 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.15 6.10 5.80 86.36 0.50 6.60 16 5 N -0.61 -30.82 2.99 -699.11 -2.09 -32.91 16 6 C -0.26 -14.38 9.59 84.03 0.81 -13.58 16 7 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 8 C -0.05 -2.99 4.91 84.86 0.42 -2.58 16 9 N -0.94 -56.55 11.19 21.65 0.24 -56.31 16 10 Si 0.97 45.09 29.59 68.60 2.03 47.12 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 C 0.18 9.25 5.31 86.36 0.46 9.71 16 15 C -0.13 -5.42 5.65 30.67 0.17 -5.24 16 16 C 0.17 5.77 1.88 45.02 0.08 5.85 16 17 H 0.07 2.57 7.58 -2.39 -0.02 2.55 16 18 N -0.69 -19.64 4.36 -445.27 -1.94 -21.58 16 19 C 0.57 17.12 7.76 86.79 0.67 17.80 16 20 O -0.56 -20.54 15.95 -3.91 -0.06 -20.60 16 21 C 0.11 2.61 6.74 41.91 0.28 2.90 16 22 C -0.12 -2.37 9.55 22.34 0.21 -2.16 16 23 C -0.02 -0.37 10.16 22.38 0.23 -0.14 16 24 C 0.03 0.55 7.24 39.70 0.29 0.83 16 25 N -0.51 -9.52 11.30 -306.03 -3.46 -12.98 16 26 C 0.50 6.34 9.39 179.70 1.69 8.02 16 27 O -0.43 -2.50 13.62 -84.59 -1.15 -3.65 16 28 N -0.57 -7.08 6.25 -307.04 -1.92 -9.00 16 29 H 0.44 2.83 8.96 -92.71 -0.83 2.00 16 30 C 0.23 4.52 8.46 134.00 1.13 5.65 16 31 N -0.45 -10.08 9.54 -181.67 -1.73 -11.81 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.39 7.37 -2.39 -0.02 1.38 16 34 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.07 2.53 7.93 -2.39 -0.02 2.51 16 36 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 38 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H 0.06 3.23 6.04 -2.39 -0.01 3.21 16 40 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.42 10.10 7.61 -92.71 -0.71 9.39 16 43 H 0.17 3.12 7.61 -2.91 -0.02 3.10 16 44 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 45 H 0.44 -2.63 9.06 -74.06 -0.67 -3.30 16 Total: -1.00 -76.70 373.42 -3.65 -80.35 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -1.13 Total: 13.50 kcal Atomic # 6 Polarization: 20.30 SS G_CDS: 7.57 Total: 27.87 kcal Atomic # 7 Polarization: -133.68 SS G_CDS: -10.90 Total: -144.58 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -1.21 Total: -24.25 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.70 -3.65 -80.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942582427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.018 kcal (2) G-P(sol) polarization free energy of solvation -76.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds