Wall clock time and date at job start Wed Apr 1 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.49747 * 2 1 4 4 C 1.53191 * 109.49911 * 120.09862 * 2 1 3 5 5 N 1.46926 * 108.77490 * 174.59089 * 4 2 1 6 6 C 1.36937 * 120.63494 * 126.37240 * 5 4 2 7 7 H 1.08003 * 119.99307 * 331.82440 * 6 5 4 8 8 C 1.38806 * 120.00509 * 151.82390 * 6 5 4 9 9 N 1.31619 * 120.00026 * 343.08973 * 8 6 5 10 10 Si 1.86806 * 120.00198 * 163.08959 * 8 6 5 11 11 H 1.48499 * 109.46769 * 60.00206 * 10 8 6 12 12 H 1.48500 * 109.46923 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46758 * 299.99999 * 10 8 6 14 14 C 1.46925 * 118.73775 * 306.38935 * 5 4 2 15 15 C 1.53193 * 108.76835 * 53.61649 * 14 5 4 16 16 C 1.53039 * 109.31072 * 305.34855 * 15 14 5 17 17 H 1.09000 * 109.45897 * 301.36597 * 16 15 14 18 18 N 1.46500 * 109.45919 * 181.39620 * 16 15 14 19 19 C 1.34774 * 120.00134 * 84.97280 * 18 16 15 20 20 O 1.21596 * 119.99725 * 359.97438 * 19 18 16 21 21 C 1.47544 * 120.00115 * 180.02562 * 19 18 16 22 22 C 1.46410 * 120.25129 * 0.02562 * 21 19 18 23 23 C 1.35593 * 119.10243 * 179.97438 * 22 21 19 24 24 C 1.41163 * 119.48821 * 359.97438 * 23 22 21 25 25 N 1.32064 * 132.79807 * 179.97438 * 24 23 22 26 26 N 1.28592 * 109.72037 * 179.76881 * 25 24 23 27 27 C 1.31092 * 110.35202 * 0.39297 * 26 25 24 28 28 O 1.35692 * 126.33390 * 179.88058 * 27 26 25 29 29 N 1.36532 * 107.32975 * 359.61710 * 27 26 25 30 30 C 1.36026 * 133.09784 * 180.22538 * 29 27 26 31 31 H 1.09005 * 109.46509 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46800 * 300.05841 * 1 2 3 33 33 H 1.08995 * 109.46794 * 60.06145 * 1 2 3 34 34 H 1.09003 * 109.58958 * 294.37486 * 4 2 1 35 35 H 1.08996 * 109.58623 * 54.79681 * 4 2 1 36 36 H 0.96996 * 120.00329 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.58788 * 173.39838 * 14 5 4 38 38 H 1.09009 * 109.58633 * 293.82264 * 14 5 4 39 39 H 1.08996 * 109.49100 * 185.39993 * 15 14 5 40 40 H 1.09002 * 109.50530 * 65.30080 * 15 14 5 41 41 H 0.97002 * 120.00114 * 264.97375 * 18 16 15 42 42 H 1.07995 * 120.44683 * 359.95589 * 22 21 19 43 43 H 1.08010 * 120.25197 * 179.97438 * 23 22 21 44 44 H 0.96699 * 113.99834 * 269.68439 * 28 27 26 45 45 H 1.07996 * 119.79847 * 0.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7242 1.2493 5 7 3.5047 -0.8294 1.1693 6 6 4.2937 -0.3791 2.1939 7 1 3.9501 0.4263 2.8262 8 6 5.5351 -0.9576 2.4199 9 7 5.8213 -2.1287 1.8918 10 14 6.7995 -0.0740 3.4736 11 1 6.2482 0.1362 4.8363 12 1 8.0334 -0.8958 3.5595 13 1 7.1221 1.2401 2.8618 14 6 4.1054 -1.4265 -0.0312 15 6 3.5709 -0.6943 -1.2661 16 6 2.0409 -0.7227 -1.2486 17 1 1.6971 -1.7569 -1.2357 18 7 1.5266 -0.0522 -2.4453 19 6 1.3980 -0.7373 -3.5988 20 8 1.7093 -1.9118 -3.6463 21 6 0.8805 -0.0619 -4.8042 22 6 0.5056 1.3525 -4.7536 23 6 0.0332 1.9500 -5.8754 24 6 -0.0867 1.1993 -7.0648 25 7 -0.5046 1.5040 -8.2799 26 7 -0.4227 0.4694 -9.0391 27 6 0.0398 -0.5554 -8.3650 28 8 0.2525 -1.8055 -8.8478 29 7 0.2734 -0.1305 -7.0886 30 6 0.7501 -0.7501 -5.9754 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5147 0.8895 33 1 -0.3633 0.5129 -0.8905 34 1 1.7639 -0.1586 2.1389 35 1 1.6053 -1.7219 1.2975 36 1 6.6888 -2.5329 2.0494 37 1 5.1897 -1.3244 0.0133 38 1 3.8377 -2.4817 -0.0875 39 1 3.9337 -1.1885 -2.1673 40 1 3.9157 0.3397 -1.2537 41 1 1.2786 0.8848 -2.4075 42 1 0.6038 1.9121 -3.8353 43 1 -0.2493 2.9924 -5.8589 44 1 -0.5089 -2.3954 -8.7613 45 1 1.0262 -1.7933 -6.0185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943499950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:06 Heat of formation + Delta-G solvation = 37.681318 kcal Electronic energy + Delta-G solvation = -29884.879818 eV Core-core repulsion = 25711.438158 eV Total energy + Delta-G solvation = -4173.441660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.76604 -41.36885 -39.55798 -38.90299 -38.50967 -36.27108 -35.02720 -34.13093 -32.91491 -32.61039 -31.38264 -30.17225 -27.38155 -27.29020 -25.71798 -24.87679 -23.79559 -23.71350 -22.61929 -21.97278 -21.05061 -20.44621 -19.35650 -18.78661 -18.41158 -18.17691 -17.78868 -17.08766 -16.73983 -16.17941 -16.05347 -15.93426 -15.66731 -15.57958 -15.16426 -14.72793 -14.66008 -14.54590 -14.19853 -13.73064 -13.68498 -13.53272 -13.40210 -13.03947 -12.97161 -12.83388 -12.68608 -12.55502 -12.31397 -12.25886 -12.05963 -12.03594 -11.69685 -11.64299 -11.56030 -11.35370 -11.07365 -10.81925 -10.54708 -10.04675 -9.33943 -8.68881 -7.86323 -5.32413 -0.75785 -0.32459 0.60524 1.06398 1.48908 1.51100 1.57649 1.68169 1.96734 2.32489 2.52572 2.52751 2.92990 3.23005 3.30274 3.34728 3.54828 3.64428 3.68320 3.77677 4.05972 4.11638 4.20848 4.37636 4.42125 4.62247 4.64429 4.71412 4.76035 4.79092 4.85195 4.90324 4.93593 5.06197 5.12334 5.15326 5.17933 5.33624 5.36728 5.43824 5.50537 5.56626 5.65942 5.73075 6.22244 6.39776 6.46979 7.11759 7.14554 7.15101 7.86429 8.38241 9.20284 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022145 B = 0.002211 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.079219 B =12662.531685 C =12989.742165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.099 4.099 3 H 0.085 0.915 4 C 0.147 3.853 5 N -0.609 5.609 6 C -0.260 4.260 7 H 0.074 0.926 8 C -0.053 4.053 9 N -0.938 5.938 10 Si 0.966 3.034 11 H -0.274 1.274 12 H -0.300 1.300 13 H -0.276 1.276 14 C 0.181 3.819 15 C -0.133 4.133 16 C 0.170 3.830 17 H 0.062 0.938 18 N -0.691 5.691 19 C 0.570 3.430 20 O -0.574 6.574 21 C -0.147 4.147 22 C -0.045 4.045 23 C -0.077 4.077 24 C 0.210 3.790 25 N -0.304 5.304 26 N -0.271 5.271 27 C 0.326 3.674 28 O -0.430 6.430 29 N -0.408 5.408 30 C 0.135 3.865 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.009 0.991 36 H 0.249 0.751 37 H 0.054 0.946 38 H -0.012 1.012 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.417 0.583 42 H 0.195 0.805 43 H 0.201 0.799 44 H 0.431 0.569 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.973 8.400 -14.164 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 H 0.104 0.896 4 C 0.022 3.978 5 N -0.332 5.332 6 C -0.390 4.390 7 H 0.091 0.909 8 C -0.249 4.249 9 N -0.584 5.584 10 Si 0.795 3.205 11 H -0.199 1.199 12 H -0.226 1.226 13 H -0.202 1.202 14 C 0.055 3.945 15 C -0.173 4.173 16 C 0.066 3.934 17 H 0.080 0.920 18 N -0.343 5.343 19 C 0.356 3.644 20 O -0.455 6.455 21 C -0.154 4.154 22 C -0.069 4.069 23 C -0.098 4.098 24 C -0.040 4.040 25 N -0.150 5.150 26 N -0.120 5.120 27 C 0.025 3.975 28 O -0.233 6.233 29 N -0.100 5.100 30 C 0.011 3.989 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.027 0.973 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.006 0.994 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.256 0.744 42 H 0.212 0.788 43 H 0.218 0.782 44 H 0.293 0.707 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.650 8.310 -15.719 23.686 hybrid contribution 1.207 -1.265 1.524 2.320 sum -14.442 7.045 -14.195 21.441 Atomic orbital electron populations 1.21747 0.92536 1.01921 1.03170 1.21772 0.96947 1.00092 0.93189 0.89642 1.21110 0.83359 0.96812 0.96561 1.44344 1.01186 1.71397 1.16293 1.19513 0.98900 1.11685 1.08880 0.90879 1.25839 1.02010 0.95970 1.01035 1.70191 1.22246 1.16100 1.49904 0.85356 0.78280 0.77862 0.79044 1.19937 1.22606 1.20184 1.20479 0.97647 0.92132 0.84286 1.22338 0.96001 1.01078 0.97928 1.20724 0.92446 0.96516 0.83743 0.92017 1.45788 1.64481 1.15151 1.08832 1.17833 0.77615 0.85725 0.83186 1.90850 1.51872 1.17624 1.85122 1.20509 1.06233 0.96024 0.92627 1.22648 0.93418 0.90552 1.00286 1.20641 1.01153 1.02012 0.85987 1.22761 1.00881 0.82389 0.97998 1.74872 1.22435 1.18992 0.98708 1.74456 1.16217 0.96251 1.25049 1.21939 1.05079 0.90706 0.79795 1.84988 1.43626 1.15864 1.78777 1.44062 1.43826 1.12562 1.09585 1.21842 0.93925 0.99999 0.83113 0.93660 0.91280 0.90319 0.91714 0.97320 0.94243 0.92786 0.99351 0.93287 0.91633 0.74397 0.78773 0.78222 0.70708 0.79606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.03 71.98 0.65 -1.86 16 2 C -0.10 -2.60 2.46 -10.71 -0.03 -2.63 16 3 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 4 C 0.15 5.46 5.80 86.36 0.50 5.97 16 5 N -0.61 -28.97 2.99 -699.09 -2.09 -31.06 16 6 C -0.26 -13.61 9.58 84.03 0.81 -12.81 16 7 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 8 C -0.05 -2.91 4.92 84.86 0.42 -2.50 16 9 N -0.94 -55.31 11.20 21.65 0.24 -55.06 16 10 Si 0.97 43.68 29.59 68.60 2.03 45.71 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 13 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 14 C 0.18 8.63 5.30 86.36 0.46 9.09 16 15 C -0.13 -4.79 5.65 30.67 0.17 -4.62 16 16 C 0.17 4.86 1.88 45.02 0.08 4.94 16 17 H 0.06 2.12 7.58 -2.39 -0.02 2.10 16 18 N -0.69 -13.27 4.32 -445.56 -1.93 -15.19 16 19 C 0.57 12.46 7.73 86.70 0.67 13.13 16 20 O -0.57 -18.00 15.96 -4.02 -0.06 -18.07 16 21 C -0.15 -2.24 5.98 -19.11 -0.11 -2.36 16 22 C -0.04 -0.36 9.73 23.79 0.23 -0.13 16 23 C -0.08 -0.76 10.09 22.38 0.23 -0.53 16 24 C 0.21 3.89 7.91 134.08 1.06 4.95 16 25 N -0.30 -7.35 12.28 -55.02 -0.68 -8.03 16 26 N -0.27 -6.83 12.19 -173.29 -2.11 -8.94 16 27 C 0.33 6.65 9.38 179.61 1.69 8.33 16 28 O -0.43 -6.33 13.65 -90.11 -1.23 -7.56 16 29 N -0.41 -7.59 2.95 -465.99 -1.38 -8.96 16 30 C 0.14 2.29 10.54 83.63 0.88 3.17 16 31 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 0.98 7.36 -2.39 -0.02 0.97 16 34 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 35 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 37 H 0.05 2.95 6.06 -2.39 -0.01 2.93 16 38 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.42 4.51 6.41 -92.71 -0.59 3.91 16 42 H 0.20 0.01 6.58 -2.91 -0.02 -0.01 16 43 H 0.20 0.65 8.06 -2.91 -0.02 0.62 16 44 H 0.43 1.44 9.06 -74.06 -0.67 0.77 16 45 H 0.19 3.06 7.58 -2.91 -0.02 3.04 16 Total: -1.00 -79.30 372.24 0.29 -79.01 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -0.21 Total: 5.99 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 7.70 Total: 22.15 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -7.94 Total: -127.24 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -1.29 Total: -25.63 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -79.30 0.29 -79.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943499950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.691 kcal (2) G-P(sol) polarization free energy of solvation -79.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds