Wall clock time and date at job start Wed Apr 1 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.52592 * 2 1 4 4 C 1.53195 * 109.50064 * 239.91844 * 2 1 3 5 5 N 1.46924 * 108.77327 * 185.41396 * 4 2 1 6 6 C 1.36948 * 120.62681 * 233.58481 * 5 4 2 7 7 H 1.08000 * 119.99566 * 152.81351 * 6 5 4 8 8 C 1.38802 * 120.00127 * 332.81385 * 6 5 4 9 9 N 1.31620 * 120.00413 * 159.74219 * 8 6 5 10 10 Si 1.86802 * 120.00190 * 339.74564 * 8 6 5 11 11 H 1.48504 * 109.47284 * 94.89536 * 10 8 6 12 12 H 1.48499 * 109.47231 * 214.89378 * 10 8 6 13 13 H 1.48497 * 109.46981 * 334.89537 * 10 8 6 14 14 C 1.46917 * 118.74182 * 53.60948 * 5 4 2 15 15 C 1.53186 * 108.77729 * 306.38979 * 14 5 4 16 16 C 1.53041 * 109.31367 * 54.63340 * 15 14 5 17 17 H 1.09002 * 109.46128 * 178.62668 * 16 15 14 18 18 N 1.46501 * 109.45733 * 58.65628 * 16 15 14 19 19 C 1.34777 * 120.00045 * 85.27987 * 18 16 15 20 20 O 1.21675 * 119.99685 * 359.72208 * 19 18 16 21 21 C 1.46900 * 120.00165 * 179.72421 * 19 18 16 22 22 C 1.36386 * 126.76118 * 359.67841 * 21 19 18 23 23 N 1.35453 * 109.77234 * 179.88963 * 22 21 19 24 24 H 0.97004 * 124.79251 * 180.12023 * 23 22 21 25 25 C 1.38046 * 110.41409 * 0.39424 * 23 22 21 26 26 C 1.39114 * 133.15905 * 179.74418 * 25 23 22 27 27 C 1.37751 * 119.96764 * 180.02562 * 26 25 23 28 28 C 1.38943 * 120.61160 * 359.97438 * 27 26 25 29 29 F 1.35101 * 119.87892 * 180.02562 * 28 27 26 30 30 C 1.37952 * 120.24470 * 0.02562 * 28 27 26 31 31 C 1.39295 * 119.65209 * 359.97438 * 30 28 27 32 32 H 1.08994 * 109.47291 * 299.91972 * 1 2 3 33 33 H 1.08997 * 109.47279 * 59.92083 * 1 2 3 34 34 H 1.09000 * 109.47170 * 179.91681 * 1 2 3 35 35 H 1.09002 * 109.58124 * 65.62837 * 4 2 1 36 36 H 1.08995 * 109.58358 * 305.20209 * 4 2 1 37 37 H 0.96992 * 120.00461 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.58950 * 186.60207 * 14 5 4 39 39 H 1.09005 * 109.58611 * 66.17737 * 14 5 4 40 40 H 1.09000 * 109.50150 * 294.68321 * 15 14 5 41 41 H 1.09004 * 109.50289 * 174.58418 * 15 14 5 42 42 H 0.96996 * 119.99885 * 264.99952 * 18 16 15 43 43 H 1.08005 * 125.11647 * 0.04364 * 22 21 19 44 44 H 1.08006 * 120.01786 * 0.04390 * 26 25 23 45 45 H 1.08002 * 119.69182 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.17257 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8291 -1.1694 6 6 4.2936 -0.3792 -2.1944 7 1 5.3016 -0.0471 -1.9941 8 6 3.7979 -0.3500 -3.4905 9 7 4.3621 0.4234 -4.3938 10 14 2.3298 -1.4085 -3.9531 11 1 1.0850 -0.6073 -3.8349 12 1 2.4824 -1.8823 -5.3522 13 1 2.2549 -2.5771 -3.0401 14 6 4.1052 -1.4266 0.0308 15 6 3.5708 -0.6950 1.2660 16 6 2.0407 -0.7231 1.2484 17 1 1.6581 -0.2243 2.1388 18 7 1.5783 -2.1131 1.2308 19 6 1.4435 -2.7931 2.3866 20 8 1.7107 -2.2541 3.4443 21 6 0.9741 -4.1849 2.3695 22 6 0.6320 -4.9175 1.2711 23 7 0.2498 -6.1605 1.6502 24 1 -0.0363 -6.8609 1.0431 25 6 0.3190 -6.2878 3.0231 26 6 0.0380 -7.3329 3.8972 27 6 0.2066 -7.1598 5.2534 28 6 0.6570 -5.9476 5.7613 29 9 0.8177 -5.7943 7.0940 30 6 0.9408 -4.8999 4.9100 31 6 0.7741 -5.0632 3.5367 32 1 -0.3633 0.5126 0.8906 33 1 -0.3634 0.5150 -0.8892 34 1 -0.3633 -1.0277 -0.0015 35 1 1.7638 -0.1579 -2.1389 36 1 1.6053 -1.7216 -1.2980 37 1 4.0154 0.4441 -5.2994 38 1 5.1896 -1.3245 -0.0136 39 1 3.8375 -2.4818 0.0868 40 1 3.9158 0.3389 1.2542 41 1 3.9333 -1.1896 2.1672 42 1 1.3653 -2.5427 0.3877 43 1 0.6637 -4.5611 0.2521 44 1 -0.3120 -8.2796 3.5127 45 1 -0.0133 -7.9741 5.9280 46 1 1.2905 -3.9579 5.3061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946179269.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:40 Heat of formation + Delta-G solvation = 0.340921 kcal Electronic energy + Delta-G solvation = -30510.834951 eV Core-core repulsion = 26315.854128 eV Total energy + Delta-G solvation = -4194.980823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -48.94203 -41.74208 -39.76438 -37.69206 -37.00284 -34.35085 -32.64966 -32.23886 -31.88601 -30.45699 -29.40330 -29.05117 -26.24336 -25.33385 -23.55379 -23.39469 -22.37751 -22.14696 -20.94677 -19.95414 -18.91601 -18.63442 -17.54814 -16.88337 -16.73511 -16.33142 -15.77420 -15.58599 -15.49192 -15.12123 -14.97247 -14.50766 -14.24455 -14.16914 -13.77157 -13.59590 -13.43485 -13.36430 -13.23226 -13.02975 -12.84157 -12.75543 -12.24379 -11.95631 -11.66113 -11.55007 -11.38585 -11.26579 -11.18690 -10.72682 -10.52819 -10.26722 -10.09425 -10.05246 -9.73406 -9.72395 -9.51156 -8.75469 -8.66931 -8.55152 -8.08147 -7.02286 -5.99709 -3.35654 0.58832 1.06284 1.77330 2.60383 3.22868 3.24969 3.35778 3.39364 3.41259 3.66994 4.02076 4.28257 4.45155 4.46434 4.63769 4.75547 4.88232 4.98871 5.01387 5.10543 5.27538 5.33116 5.35504 5.40480 5.45612 5.66815 5.70845 5.85871 5.88089 5.89924 5.94818 5.96652 6.04064 6.16502 6.21632 6.25833 6.28319 6.39341 6.44311 6.56907 6.65388 6.66356 6.71125 6.77009 6.94250 6.99245 7.76466 7.91215 8.28715 8.46850 8.89010 9.66570 10.04005 11.16463 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.002904 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.965055 B = 9639.800143 C =10284.615644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 H 0.089 0.911 4 C 0.134 3.866 5 N -0.605 5.605 6 C -0.258 4.258 7 H 0.086 0.914 8 C 0.022 3.978 9 N -0.908 5.908 10 Si 0.883 3.117 11 H -0.289 1.289 12 H -0.304 1.304 13 H -0.272 1.272 14 C 0.152 3.848 15 C -0.147 4.147 16 C 0.162 3.838 17 H 0.081 0.919 18 N -0.714 5.714 19 C 0.588 3.412 20 O -0.546 6.546 21 C -0.221 4.221 22 C 0.116 3.884 23 N -0.576 5.576 24 H 0.422 0.578 25 C 0.074 3.926 26 C -0.096 4.096 27 C -0.134 4.134 28 C 0.074 3.926 29 F -0.141 7.141 30 C -0.096 4.096 31 C -0.037 4.037 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.019 0.981 37 H 0.262 0.738 38 H 0.062 0.938 39 H 0.021 0.979 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.396 0.604 43 H 0.182 0.818 44 H 0.132 0.868 45 H 0.139 0.861 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 -14.921 13.725 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 H 0.107 0.893 4 C 0.008 3.992 5 N -0.328 5.328 6 C -0.386 4.386 7 H 0.104 0.896 8 C -0.177 4.177 9 N -0.551 5.551 10 Si 0.714 3.286 11 H -0.217 1.217 12 H -0.233 1.233 13 H -0.197 1.197 14 C 0.026 3.974 15 C -0.187 4.187 16 C 0.058 3.942 17 H 0.099 0.901 18 N -0.365 5.365 19 C 0.375 3.625 20 O -0.425 6.425 21 C -0.231 4.231 22 C -0.017 4.017 23 N -0.177 5.177 24 H 0.260 0.740 25 C -0.031 4.031 26 C -0.116 4.116 27 C -0.154 4.154 28 C 0.054 3.946 29 F -0.119 7.119 30 C -0.115 4.115 31 C -0.042 4.042 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.231 0.769 43 H 0.199 0.801 44 H 0.150 0.850 45 H 0.157 0.843 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.751 -14.541 14.260 23.513 hybrid contribution -1.023 -1.078 -1.068 1.830 sum -12.773 -15.619 13.192 24.107 Atomic orbital electron populations 1.21781 0.95585 1.01339 1.01497 1.21973 0.94866 1.01197 0.95993 0.89291 1.21340 0.85159 0.96532 0.96201 1.44369 1.00461 1.70214 1.17783 1.18945 0.98426 1.36094 0.85134 0.89635 1.25289 0.97948 0.98793 0.95686 1.69830 1.43015 1.38139 1.04121 0.86932 0.82811 0.82130 0.76767 1.21666 1.23265 1.19712 1.20880 0.97162 0.93961 0.85425 1.22380 0.94868 1.02095 0.99355 1.20885 0.94453 0.80521 0.98354 0.90145 1.45983 1.67811 1.14424 1.08267 1.17118 0.77179 0.84171 0.83987 1.90755 1.51488 1.69650 1.30584 1.20117 1.15656 0.95606 0.91764 1.22231 0.96082 0.83975 0.99424 1.41509 1.57344 1.13087 1.05766 0.73989 1.18251 1.05037 0.96463 0.83339 1.19810 1.03311 0.97232 0.91282 1.20757 1.02635 0.96779 0.95179 1.17370 1.04640 0.95078 0.77481 1.91492 1.93652 1.96220 1.30585 1.20610 1.00281 0.99322 0.91297 1.18423 1.01464 0.92180 0.92133 0.92863 0.92574 0.93178 0.90738 0.96363 0.92773 0.91969 0.96076 0.90978 0.91977 0.76902 0.80112 0.84994 0.84323 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.05 37.15 0.34 -1.62 16 2 C -0.12 -1.94 2.67 -90.50 -0.24 -2.18 16 3 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 4 C 0.13 2.62 3.18 -3.71 -0.01 2.61 16 5 N -0.60 -13.43 2.77 -172.33 -0.48 -13.91 16 6 C -0.26 -6.91 10.04 -15.06 -0.15 -7.06 16 7 H 0.09 2.48 8.05 -52.49 -0.42 2.06 16 8 C 0.02 0.60 5.24 -17.43 -0.09 0.51 16 9 N -0.91 -27.12 13.97 55.49 0.78 -26.35 16 10 Si 0.88 21.03 24.35 -169.99 -4.14 16.89 16 11 H -0.29 -6.63 6.70 56.52 0.38 -6.25 16 12 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 13 H -0.27 -6.10 6.45 56.52 0.36 -5.73 16 14 C 0.15 2.89 6.26 -3.72 -0.02 2.86 16 15 C -0.15 -2.47 5.77 -26.61 -0.15 -2.63 16 16 C 0.16 2.53 2.22 -67.89 -0.15 2.38 16 17 H 0.08 1.29 7.57 -51.93 -0.39 0.89 16 18 N -0.71 -10.12 3.58 -55.00 -0.20 -10.32 16 19 C 0.59 8.86 7.76 -12.75 -0.10 8.76 16 20 O -0.55 -9.92 15.81 5.21 0.08 -9.84 16 21 C -0.22 -2.79 6.27 -103.31 -0.65 -3.44 16 22 C 0.12 1.04 11.33 -16.62 -0.19 0.86 16 23 N -0.58 -4.23 5.99 -10.47 -0.06 -4.30 16 24 H 0.42 1.59 8.96 -40.82 -0.37 1.22 16 25 C 0.07 0.72 7.26 -83.94 -0.61 0.11 16 26 C -0.10 -0.76 10.06 -39.43 -0.40 -1.15 16 27 C -0.13 -1.17 9.99 -39.50 -0.39 -1.57 16 28 C 0.07 0.85 7.29 -39.43 -0.29 0.56 16 29 F -0.14 -1.70 17.26 2.25 0.04 -1.66 16 30 C -0.10 -1.24 9.83 -39.29 -0.39 -1.63 16 31 C -0.04 -0.47 6.26 -104.96 -0.66 -1.13 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.62 7.54 -51.93 -0.39 0.23 16 35 H 0.07 1.65 4.50 -51.93 -0.23 1.41 16 36 H 0.02 0.34 5.48 -51.93 -0.28 0.06 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 39 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.40 5.14 5.61 -40.82 -0.23 4.91 16 43 H 0.18 1.17 7.38 -52.48 -0.39 0.78 16 44 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 45 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.15 2.07 7.45 -52.49 -0.39 1.68 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -33.20 367.83 -8.66 -41.86 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.07 Total: 5.84 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -4.15 Total: -3.76 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.04 Total: -54.87 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.14 Total: 16.89 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.20 -8.66 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946179269.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.202 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds