Wall clock time and date at job start Wed Apr 1 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.50052 * 2 1 4 4 C 1.53193 * 109.49775 * 120.06711 * 2 1 3 5 5 N 1.46927 * 108.77302 * 174.55110 * 4 2 1 6 6 C 1.36936 * 120.60574 * 126.42434 * 5 4 2 7 7 H 1.08005 * 119.99729 * 207.70176 * 6 5 4 8 8 C 1.38814 * 120.00157 * 27.69993 * 6 5 4 9 9 N 1.31623 * 119.99848 * 17.36350 * 8 6 5 10 10 Si 1.86797 * 120.00131 * 197.36696 * 8 6 5 11 11 H 1.48505 * 109.46906 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47417 * 119.99907 * 10 8 6 13 13 H 1.48498 * 109.47154 * 239.99764 * 10 8 6 14 14 C 1.46925 * 118.76433 * 306.44082 * 5 4 2 15 15 C 1.53191 * 108.77465 * 53.59328 * 14 5 4 16 16 C 1.53036 * 109.49557 * 239.93184 * 2 1 3 17 17 H 1.09003 * 109.45808 * 58.68422 * 16 2 1 18 18 N 1.46495 * 109.46281 * 298.70943 * 16 2 1 19 19 C 1.34782 * 119.99985 * 154.99927 * 18 16 2 20 20 O 1.21672 * 119.99957 * 359.97438 * 19 18 16 21 21 C 1.46906 * 119.99842 * 179.97438 * 19 18 16 22 22 C 1.36384 * 126.76425 * 359.68162 * 21 19 18 23 23 N 1.35449 * 109.77387 * 179.88990 * 22 21 19 24 24 H 0.96993 * 124.79456 * 180.13123 * 23 22 21 25 25 C 1.38055 * 110.41129 * 0.39121 * 23 22 21 26 26 C 1.39115 * 133.15212 * 179.74007 * 25 23 22 27 27 C 1.37759 * 119.96182 * 180.02562 * 26 25 23 28 28 C 1.38941 * 120.60880 * 0.02562 * 27 26 25 29 29 F 1.35098 * 119.87525 * 180.02562 * 28 27 26 30 30 C 1.37952 * 120.24838 * 0.02562 * 28 27 26 31 31 C 1.39284 * 119.65302 * 359.97438 * 30 28 27 32 32 H 1.08997 * 109.47398 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46800 * 59.99369 * 1 2 3 34 34 H 1.09002 * 109.46501 * 299.99970 * 1 2 3 35 35 H 1.08997 * 109.58570 * 294.37494 * 4 2 1 36 36 H 1.09002 * 109.58851 * 54.79083 * 4 2 1 37 37 H 0.97000 * 119.99935 * 180.02562 * 9 8 6 38 38 H 1.09005 * 109.58845 * 293.80333 * 14 5 4 39 39 H 1.09004 * 109.58650 * 173.37729 * 14 5 4 40 40 H 1.09002 * 109.49923 * 185.41732 * 15 14 5 41 41 H 1.09000 * 109.52929 * 65.32585 * 15 14 5 42 42 H 0.96995 * 120.00289 * 334.99305 * 18 16 2 43 43 H 1.08003 * 125.11172 * 0.04653 * 22 21 19 44 44 H 1.07994 * 120.02226 * 0.05725 * 26 25 23 45 45 H 1.08004 * 119.69263 * 180.02562 * 27 26 25 46 46 H 1.08005 * 120.17130 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7235 1.2498 5 7 3.5046 -0.8296 1.1693 6 6 4.2936 -0.3797 2.1941 7 1 5.2989 -0.0402 1.9926 8 6 3.8013 -0.3600 3.4919 9 7 2.7378 -1.0702 3.8032 10 14 4.6482 0.6747 4.7964 11 1 5.8127 1.3731 4.1953 12 1 3.6917 1.6766 5.3316 13 1 5.1137 -0.2037 5.8996 14 6 4.1052 -1.4269 -0.0312 15 6 3.5709 -0.6948 -1.2662 16 6 2.0408 -0.7228 -1.2485 17 1 1.6584 -0.2237 -2.1389 18 7 1.5782 -2.1127 -1.2314 19 6 1.4501 -2.7946 -2.3869 20 8 1.7181 -2.2556 -3.4443 21 6 0.9867 -4.1886 -2.3696 22 6 0.6560 -4.9253 -1.2706 23 7 0.2717 -6.1674 -1.6502 24 1 -0.0110 -6.8690 -1.0431 25 6 0.3448 -6.2955 -3.0229 26 6 0.0723 -7.3433 -3.8965 27 6 0.2439 -7.1708 -5.2525 28 6 0.6887 -5.9564 -5.7604 29 9 0.8513 -5.8034 -7.0928 30 6 0.9650 -4.9065 -4.9093 31 6 0.7953 -5.0692 -3.5365 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3632 0.5139 0.8900 35 1 1.7638 -0.1574 2.1389 36 1 1.6052 -1.7213 1.2985 37 1 2.3936 -1.0561 4.7100 38 1 3.8374 -2.4820 -0.0875 39 1 5.1896 -1.3248 0.0134 40 1 3.9334 -1.1892 -2.1674 41 1 3.9159 0.3391 -1.2546 42 1 1.3643 -2.5423 -0.3885 43 1 0.6925 -4.5707 -0.2511 44 1 -0.2740 -8.2912 -3.5121 45 1 0.0306 -7.9870 -5.9268 46 1 1.3111 -3.9632 -5.3055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946179276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:52 Heat of formation + Delta-G solvation = -24.695741 kcal Electronic energy + Delta-G solvation = -30358.150226 eV Core-core repulsion = 26162.083732 eV Total energy + Delta-G solvation = -4196.066494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.82936 -42.48496 -40.89710 -38.88625 -37.72755 -35.86020 -33.80108 -33.49411 -33.03058 -31.42033 -30.15696 -29.86254 -27.48684 -26.99046 -24.61172 -24.16232 -23.49354 -22.91145 -22.51547 -20.89956 -20.06708 -19.40573 -18.70039 -18.28472 -17.62032 -17.16719 -16.78646 -16.64325 -16.47752 -16.22767 -16.04931 -15.66943 -15.50598 -15.12492 -15.03540 -14.74072 -14.63155 -14.47517 -14.22896 -14.07160 -13.73953 -13.65196 -13.54581 -13.05087 -12.91752 -12.74678 -12.53744 -12.44337 -12.38593 -12.13424 -12.03890 -11.76970 -11.66256 -11.42622 -11.09632 -10.87811 -10.86290 -10.51452 -9.92450 -9.29022 -8.85433 -8.62485 -7.84908 -5.27515 -0.15945 0.30314 0.94726 1.47189 1.51234 1.59772 1.98168 2.34270 2.39462 2.53608 2.75978 3.24878 3.29871 3.61144 3.69488 3.78655 3.84896 3.92341 4.07499 4.09996 4.23388 4.31693 4.38112 4.39815 4.57541 4.62599 4.64854 4.72042 4.78226 4.90821 4.98818 5.00675 5.08231 5.13132 5.16387 5.20260 5.21557 5.33434 5.38151 5.43862 5.46614 5.56193 5.67726 5.70914 5.80702 5.95676 6.43149 6.49376 6.72570 7.19641 7.39472 7.89234 8.40561 9.20682 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.002610 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.413516 B =10727.139790 C =11205.315611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 H 0.068 0.932 4 C 0.189 3.811 5 N -0.607 5.607 6 C -0.261 4.261 7 H 0.058 0.942 8 C -0.041 4.041 9 N -0.924 5.924 10 Si 0.958 3.042 11 H -0.274 1.274 12 H -0.290 1.290 13 H -0.293 1.293 14 C 0.152 3.848 15 C -0.136 4.136 16 C 0.170 3.830 17 H 0.072 0.928 18 N -0.702 5.702 19 C 0.586 3.414 20 O -0.592 6.592 21 C -0.269 4.269 22 C 0.151 3.849 23 N -0.552 5.552 24 H 0.444 0.556 25 C 0.071 3.929 26 C -0.074 4.074 27 C -0.134 4.134 28 C 0.065 3.935 29 F -0.151 7.151 30 C -0.130 4.130 31 C -0.064 4.064 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.014 0.986 37 H 0.250 0.750 38 H 0.019 0.981 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.404 0.596 43 H 0.211 0.789 44 H 0.177 0.823 45 H 0.169 0.831 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.026 -14.015 -10.835 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 H 0.086 0.914 4 C 0.064 3.936 5 N -0.330 5.330 6 C -0.391 4.391 7 H 0.076 0.924 8 C -0.237 4.237 9 N -0.570 5.570 10 Si 0.787 3.213 11 H -0.199 1.199 12 H -0.216 1.216 13 H -0.220 1.220 14 C 0.026 3.974 15 C -0.176 4.176 16 C 0.065 3.935 17 H 0.090 0.910 18 N -0.353 5.353 19 C 0.376 3.624 20 O -0.474 6.474 21 C -0.279 4.279 22 C 0.016 3.984 23 N -0.155 5.155 24 H 0.287 0.713 25 C -0.035 4.035 26 C -0.094 4.094 27 C -0.153 4.153 28 C 0.045 3.955 29 F -0.129 7.129 30 C -0.150 4.150 31 C -0.068 4.068 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.032 0.968 37 H 0.060 0.940 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.242 0.758 43 H 0.228 0.772 44 H 0.195 0.805 45 H 0.187 0.813 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.924 -13.744 -11.371 20.412 hybrid contribution 0.637 0.609 1.111 1.419 sum -9.287 -13.134 -10.259 19.079 Atomic orbital electron populations 1.21654 0.93553 1.02127 1.01597 1.21942 0.96573 0.99650 0.95451 0.91382 1.20620 0.82193 0.96256 0.94570 1.44276 1.02399 1.69982 1.16337 1.19441 0.97881 1.35027 0.86795 0.92408 1.25593 0.99461 1.00232 0.98462 1.70120 1.26714 1.41393 1.18805 0.85354 0.78071 0.78526 0.79334 1.19889 1.21628 1.21991 1.20862 0.96040 0.94281 0.86168 1.22252 0.96149 1.01114 0.98066 1.20681 0.93256 0.81618 0.97973 0.91030 1.45829 1.67315 1.13621 1.08558 1.17524 0.76321 0.85193 0.83334 1.90713 1.53691 1.70973 1.32052 1.19980 1.19707 0.94818 0.93429 1.22578 0.92572 0.83715 0.99578 1.41487 1.55646 1.13044 1.05295 0.71343 1.18432 1.04848 0.95785 0.84391 1.20295 1.00668 0.98029 0.90420 1.21097 1.01877 0.96109 0.96264 1.17642 1.05055 0.95917 0.76883 1.91455 1.93773 1.96398 1.31323 1.20488 1.03049 0.99038 0.92422 1.18653 1.02433 0.93788 0.91960 0.92189 0.92269 0.92565 0.92404 0.96763 0.94042 0.96277 0.93738 0.92523 0.91704 0.75845 0.77228 0.80544 0.81313 0.86613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.05 71.98 0.65 -3.09 16 2 C -0.12 -4.00 2.67 -10.72 -0.03 -4.03 16 3 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 4 C 0.19 8.05 4.30 86.36 0.37 8.42 16 5 N -0.61 -28.56 3.00 -699.08 -2.09 -30.65 16 6 C -0.26 -13.81 9.58 84.03 0.81 -13.01 16 7 H 0.06 3.08 7.89 -2.91 -0.02 3.05 16 8 C -0.04 -2.19 4.91 84.86 0.42 -1.78 16 9 N -0.92 -50.42 11.19 21.65 0.24 -50.18 16 10 Si 0.96 43.30 29.59 68.60 2.03 45.33 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 13 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 14 C 0.15 6.24 6.26 86.36 0.54 6.78 16 15 C -0.14 -4.95 5.77 30.67 0.18 -4.77 16 16 C 0.17 5.74 2.21 45.02 0.10 5.84 16 17 H 0.07 2.51 7.58 -2.39 -0.02 2.49 16 18 N -0.70 -21.51 3.59 -446.15 -1.60 -23.11 16 19 C 0.59 19.37 7.76 86.51 0.67 20.04 16 20 O -0.59 -24.01 15.82 -4.26 -0.07 -24.07 16 21 C -0.27 -7.23 6.27 -19.02 -0.12 -7.34 16 22 C 0.15 2.64 11.33 83.70 0.95 3.59 16 23 N -0.55 -6.98 5.99 -187.04 -1.12 -8.10 16 24 H 0.44 1.86 8.96 -92.71 -0.83 1.03 16 25 C 0.07 1.29 7.26 38.89 0.28 1.57 16 26 C -0.07 -0.96 10.07 22.37 0.23 -0.74 16 27 C -0.13 -2.14 9.99 22.32 0.22 -1.92 16 28 C 0.06 1.57 7.29 22.37 0.16 1.73 16 29 F -0.15 -3.90 17.26 44.97 0.78 -3.12 16 30 C -0.13 -3.79 9.83 22.45 0.22 -3.56 16 31 C -0.06 -1.70 6.26 -20.08 -0.13 -1.83 16 32 H 0.06 1.58 7.53 -2.39 -0.02 1.56 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 2.87 6.04 -2.39 -0.01 2.85 16 36 H 0.01 0.60 6.64 -2.39 -0.02 0.59 16 37 H 0.25 13.25 8.31 -92.71 -0.77 12.48 16 38 H 0.02 0.78 7.74 -2.38 -0.02 0.76 16 39 H 0.04 1.86 7.93 -2.39 -0.02 1.84 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.40 11.33 5.61 -92.71 -0.52 10.81 16 43 H 0.21 2.50 7.38 -2.91 -0.02 2.48 16 44 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 45 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 46 H 0.12 3.92 7.45 -2.91 -0.02 3.90 16 Total: -1.00 -71.46 374.44 3.37 -68.09 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.31 Total: 19.91 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 5.52 Total: 5.90 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.57 Total: -112.03 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.07 Total: -24.07 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -71.46 3.37 -68.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946179276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.390 kcal (2) G-P(sol) polarization free energy of solvation -71.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds