Wall clock time and date at job start Wed Apr 1 2020 04:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.70442 * 2 1 4 4 C 1.53194 * 109.58836 * 239.64252 * 2 1 3 5 5 C 1.53036 * 109.31364 * 185.57860 * 4 2 1 6 6 H 1.08993 * 109.46568 * 301.34473 * 5 4 2 7 7 N 1.46498 * 109.45935 * 181.36848 * 5 4 2 8 8 C 1.34786 * 119.99936 * 154.99863 * 7 5 4 9 9 O 1.21571 * 119.99753 * 0.02562 * 8 7 5 10 10 C 1.47679 * 119.99972 * 180.02562 * 8 7 5 11 11 C 1.39910 * 120.39185 * 0.02562 * 10 8 7 12 12 N 1.31451 * 121.14379 * 180.02562 * 11 10 8 13 13 C 1.32469 * 121.80769 * 359.97438 * 12 11 10 14 14 N 1.37877 * 133.45623 * 179.97438 * 13 12 11 15 15 H 0.97006 * 126.24553 * 0.02562 * 14 13 12 16 16 C 1.36513 * 107.50180 * 180.02562 * 14 13 12 17 17 O 1.35267 * 125.02281 * 180.02562 * 16 14 13 18 18 N 1.30721 * 109.95108 * 0.02562 * 16 14 13 19 19 C 1.35892 * 109.40051 * 0.02562 * 18 16 14 20 20 C 1.39414 * 133.62357 * 180.33323 * 19 18 16 21 21 C 1.53353 * 109.60512 * 61.37502 * 5 4 2 22 22 C 1.53182 * 109.15055 * 298.70876 * 21 5 4 23 23 N 1.46929 * 108.89587 * 54.57978 * 22 21 5 24 24 C 1.36935 * 120.63179 * 126.33960 * 23 22 21 25 25 H 1.08001 * 119.99701 * 221.18689 * 24 23 22 26 26 C 1.38812 * 120.00277 * 41.18721 * 24 23 22 27 27 N 1.31614 * 120.00488 * 214.88125 * 26 24 23 28 28 Si 1.86805 * 119.99561 * 34.88046 * 26 24 23 29 29 H 1.48498 * 109.47182 * 84.62620 * 28 26 24 30 30 H 1.48501 * 109.46955 * 204.62654 * 28 26 24 31 31 H 1.48504 * 109.47350 * 324.62550 * 28 26 24 32 32 H 1.09005 * 109.47096 * 299.64955 * 1 2 3 33 33 H 1.08998 * 109.46715 * 59.64524 * 1 2 3 34 34 H 1.08992 * 109.47223 * 179.64765 * 1 2 3 35 35 H 1.08997 * 109.49487 * 305.53044 * 4 2 1 36 36 H 1.09002 * 109.49604 * 65.59646 * 4 2 1 37 37 H 0.96999 * 120.00402 * 335.00088 * 7 5 4 38 38 H 1.08005 * 119.42923 * 359.97438 * 11 10 8 39 39 H 0.96701 * 113.99590 * 269.96845 * 17 16 14 40 40 H 1.07996 * 120.97140 * 359.90198 * 20 19 18 41 41 H 1.09001 * 109.68308 * 178.74572 * 21 5 4 42 42 H 1.08999 * 109.47992 * 58.54949 * 21 5 4 43 43 H 1.09001 * 109.59051 * 294.72183 * 22 21 5 44 44 H 1.09004 * 109.58901 * 174.44009 * 22 21 5 45 45 H 0.96994 * 120.00459 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8480 -1.1701 6 1 4.0062 0.1472 -1.0993 7 7 4.0651 -1.5162 -2.3751 8 6 5.3294 -1.3027 -2.7906 9 8 6.0569 -0.5561 -2.1651 10 6 5.8309 -1.9758 -4.0057 11 6 5.0006 -2.8363 -4.7320 12 7 5.4318 -3.4435 -5.8152 13 6 6.6645 -3.2708 -6.2686 14 7 7.3558 -3.7725 -7.3509 15 1 7.0120 -4.3910 -8.0144 16 6 8.6122 -3.2397 -7.3183 17 8 9.5874 -3.4953 -8.2202 18 7 8.7336 -2.4461 -6.2867 19 6 7.5638 -2.4222 -5.5955 20 6 7.1392 -1.7574 -4.4460 21 6 3.9594 -1.6674 0.0655 22 6 3.4650 -0.9470 1.3237 23 7 2.0225 -0.6995 1.1945 24 6 1.1537 -1.1126 2.1690 25 1 0.2056 -1.5520 1.8962 26 6 1.4915 -0.9666 3.5075 27 7 1.1105 -1.8707 4.3848 28 14 2.4869 0.5131 4.0634 29 1 1.5752 1.6597 4.3073 30 1 3.2103 0.1805 5.3169 31 1 3.4666 0.8756 3.0079 32 1 -0.3633 0.5084 0.8932 33 1 -0.3633 0.5193 -0.8868 34 1 -0.3633 -1.0276 -0.0063 35 1 1.6030 -1.7253 -1.2912 36 1 1.7656 -0.1671 -2.1369 37 1 3.4848 -2.1122 -2.8740 38 1 3.9880 -3.0053 -4.3964 39 1 10.1471 -4.2499 -7.9910 40 1 7.8029 -1.0953 -3.9097 41 1 5.0435 -1.7715 0.1082 42 1 3.5007 -2.6545 0.0076 43 1 3.9903 0.0020 1.4317 44 1 3.6520 -1.5697 2.1987 45 1 1.3469 -1.7689 5.3200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947469062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:20 Heat of formation + Delta-G solvation = 42.642119 kcal Electronic energy + Delta-G solvation = -29512.259667 eV Core-core repulsion = 25339.033123 eV Total energy + Delta-G solvation = -4173.226544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -42.91704 -40.27239 -39.01757 -37.87517 -37.28020 -34.78882 -34.20432 -32.46466 -31.99437 -31.51395 -30.49265 -29.36516 -26.55727 -25.18688 -24.15967 -24.11341 -22.43494 -22.33832 -21.33783 -20.37463 -19.81628 -19.53828 -18.69013 -18.28072 -17.18788 -16.70489 -16.39920 -16.19592 -15.59329 -15.21334 -15.00537 -14.70108 -14.47869 -14.26723 -13.90153 -13.59205 -13.52741 -13.26020 -13.17069 -12.94211 -12.71085 -12.58005 -12.04580 -11.73140 -11.70991 -11.49988 -11.28742 -11.02212 -10.96241 -10.58407 -10.47074 -10.27674 -10.23599 -9.99658 -9.88446 -9.63001 -9.44830 -9.40900 -9.02628 -8.82383 -8.34223 -6.70429 -6.07126 -3.37497 0.18250 0.35271 1.51634 1.99902 2.68752 2.84888 3.19364 3.43893 3.50074 3.54271 3.60529 3.71313 4.12919 4.32493 4.38239 4.49579 4.60092 4.82454 4.92609 5.13909 5.21719 5.26321 5.43074 5.54709 5.56558 5.64525 5.82629 5.88416 5.97174 6.03894 6.07954 6.18494 6.27259 6.32224 6.42572 6.47000 6.57152 6.70114 6.82829 6.87290 6.91632 6.99935 7.03805 7.12232 7.25852 7.50977 8.04659 8.17707 8.43441 9.01654 9.73691 10.22607 11.08226 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026507 B = 0.002096 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.084655 B =13355.656166 C =13790.840600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.167 3.833 3 H 0.029 0.971 4 C -0.135 4.135 5 C 0.151 3.849 6 H 0.085 0.915 7 N -0.716 5.716 8 C 0.565 3.435 9 O -0.531 6.531 10 C -0.190 4.190 11 C 0.177 3.823 12 N -0.481 5.481 13 C 0.268 3.732 14 N -0.587 5.587 15 H 0.430 0.570 16 C 0.466 3.534 17 O -0.436 6.436 18 N -0.467 5.467 19 C 0.005 3.995 20 C 0.048 3.952 21 C -0.142 4.142 22 C 0.146 3.854 23 N -0.595 5.595 24 C -0.275 4.275 25 H 0.077 0.923 26 C 0.050 3.950 27 N -0.880 5.880 28 Si 0.841 3.159 29 H -0.288 1.288 30 H -0.298 1.298 31 H -0.259 1.259 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.395 0.605 38 H 0.174 0.826 39 H 0.415 0.585 40 H 0.160 0.840 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.027 0.973 44 H 0.069 0.931 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.010 -5.624 -25.079 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 H 0.046 0.954 4 C -0.174 4.174 5 C 0.048 3.952 6 H 0.103 0.897 7 N -0.367 5.367 8 C 0.351 3.649 9 O -0.408 6.408 10 C -0.198 4.198 11 C 0.009 3.991 12 N -0.194 5.194 13 C 0.031 3.969 14 N -0.214 5.214 15 H 0.270 0.730 16 C 0.160 3.840 17 O -0.238 6.238 18 N -0.198 5.198 19 C -0.115 4.115 20 C 0.020 3.980 21 C -0.183 4.183 22 C 0.020 3.980 23 N -0.319 5.319 24 C -0.403 4.403 25 H 0.094 0.906 26 C -0.153 4.153 27 N -0.519 5.519 28 Si 0.668 3.332 29 H -0.215 1.215 30 H -0.224 1.224 31 H -0.184 1.184 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.230 0.770 38 H 0.190 0.810 39 H 0.274 0.726 40 H 0.177 0.823 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.620 -4.778 -25.050 28.025 hybrid contribution 0.284 -0.237 0.102 0.384 sum 11.904 -5.015 -24.948 28.094 Atomic orbital electron populations 1.21750 0.95079 1.01830 1.00379 1.20486 0.93716 0.93325 0.86385 0.95365 1.22367 0.93273 1.02079 0.99730 1.21133 0.94535 0.96708 0.82858 0.89729 1.46188 1.12718 1.48561 1.29198 1.17764 0.82316 0.81385 0.83483 1.90815 1.56197 1.37131 1.56644 1.20785 0.95675 1.03751 0.99621 1.22791 0.99127 0.89476 0.87750 1.66378 1.12648 1.25363 1.15003 1.18710 0.91587 0.96898 0.89695 1.43033 1.12237 1.41672 1.24474 0.72958 1.20175 0.81138 0.93046 0.89624 1.84864 1.41656 1.54853 1.42416 1.70756 1.23732 1.20757 1.04554 1.19336 0.91220 1.02178 0.98735 1.20884 0.93966 0.92879 0.90242 1.22493 1.00010 0.99905 0.95866 1.21263 0.84725 0.96900 0.95131 1.44414 1.02311 1.65247 1.19969 1.18556 1.02291 1.35137 0.84282 0.90601 1.25595 0.96820 0.96899 0.95962 1.70074 1.47155 1.31344 1.03295 0.87392 0.80788 0.86835 0.78149 1.21540 1.22449 1.18364 0.91668 0.94299 0.92468 0.91316 0.92264 0.76974 0.80964 0.72571 0.82250 0.92422 0.91732 0.95557 0.91251 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.07 37.16 0.30 -2.02 16 2 C 0.17 3.10 3.50 -67.60 -0.24 2.87 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -1.99 4.84 -26.61 -0.13 -2.11 16 5 C 0.15 2.29 2.42 -67.73 -0.16 2.13 16 6 H 0.08 1.45 7.58 -51.93 -0.39 1.05 16 7 N -0.72 -8.57 5.03 -54.61 -0.27 -8.84 16 8 C 0.57 7.49 7.74 -12.40 -0.10 7.39 16 9 O -0.53 -9.09 16.06 5.30 0.09 -9.00 16 10 C -0.19 -2.07 5.89 -104.85 -0.62 -2.68 16 11 C 0.18 1.59 10.69 -17.09 -0.18 1.41 16 12 N -0.48 -4.78 10.36 -11.91 -0.12 -4.91 16 13 C 0.27 2.67 8.45 -155.42 -1.31 1.35 16 14 N -0.59 -4.04 6.23 -13.35 -0.08 -4.13 16 15 H 0.43 1.58 8.96 -40.82 -0.37 1.22 16 16 C 0.47 3.60 9.39 -88.83 -0.83 2.76 16 17 O -0.44 -1.97 13.63 -17.49 -0.24 -2.21 16 18 N -0.47 -5.12 11.32 -12.21 -0.14 -5.26 16 19 C 0.01 0.06 7.22 -84.67 -0.61 -0.55 16 20 C 0.05 0.55 9.75 -38.58 -0.38 0.17 16 21 C -0.14 -2.50 5.68 -26.45 -0.15 -2.65 16 22 C 0.15 3.12 4.59 -3.71 -0.02 3.10 16 23 N -0.60 -13.34 2.47 -164.77 -0.41 -13.75 16 24 C -0.27 -7.22 8.42 -15.06 -0.13 -7.34 16 25 H 0.08 2.13 6.83 -52.49 -0.36 1.77 16 26 C 0.05 1.39 4.82 -17.43 -0.08 1.31 16 27 N -0.88 -25.91 13.97 55.49 0.78 -25.14 16 28 Si 0.84 21.21 27.39 -169.99 -4.66 16.56 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 31 H -0.26 -6.32 5.24 56.52 0.30 -6.02 16 32 H 0.06 1.26 7.68 -51.93 -0.40 0.86 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 1.03 7.42 -51.93 -0.39 0.65 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.40 3.45 6.64 -40.82 -0.27 3.18 16 38 H 0.17 1.01 6.39 -52.48 -0.34 0.68 16 39 H 0.41 -0.44 9.06 45.56 0.41 -0.03 16 40 H 0.16 1.82 7.72 -52.49 -0.41 1.41 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.03 0.58 6.71 -51.93 -0.35 0.23 16 44 H 0.07 1.61 7.01 -51.93 -0.36 1.25 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 366.54 15.07 5.52 5.52 Total: -1.00 -35.33 366.54 -9.17 -44.50 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.99 Total: 1.53 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -4.64 Total: 5.13 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -0.25 Total: -62.02 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.15 Total: -11.21 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.66 Total: 16.56 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.33 -9.17 -44.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947469062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.138 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds