Wall clock time and date at job start Wed Apr 1 2020 04:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.70442 * 2 1 4 4 C 1.53194 * 109.58836 * 239.64252 * 2 1 3 5 5 C 1.53036 * 109.31364 * 185.57860 * 4 2 1 6 6 H 1.08993 * 109.46568 * 301.34473 * 5 4 2 7 7 N 1.46498 * 109.45935 * 181.36848 * 5 4 2 8 8 C 1.34786 * 119.99936 * 154.99863 * 7 5 4 9 9 O 1.21571 * 119.99753 * 0.02562 * 8 7 5 10 10 C 1.47679 * 119.99972 * 180.02562 * 8 7 5 11 11 C 1.39910 * 120.39185 * 0.02562 * 10 8 7 12 12 N 1.31451 * 121.14379 * 180.02562 * 11 10 8 13 13 C 1.32469 * 121.80769 * 359.97438 * 12 11 10 14 14 N 1.37877 * 133.45623 * 179.97438 * 13 12 11 15 15 H 0.97006 * 126.24553 * 0.02562 * 14 13 12 16 16 C 1.36513 * 107.50180 * 180.02562 * 14 13 12 17 17 O 1.35267 * 125.02281 * 180.02562 * 16 14 13 18 18 N 1.30721 * 109.95108 * 0.02562 * 16 14 13 19 19 C 1.35892 * 109.40051 * 0.02562 * 18 16 14 20 20 C 1.39414 * 133.62357 * 180.33323 * 19 18 16 21 21 C 1.53353 * 109.60512 * 61.37502 * 5 4 2 22 22 C 1.53182 * 109.15055 * 298.70876 * 21 5 4 23 23 N 1.46929 * 108.89587 * 54.57978 * 22 21 5 24 24 C 1.36935 * 120.63179 * 126.33960 * 23 22 21 25 25 H 1.08001 * 119.99701 * 221.18689 * 24 23 22 26 26 C 1.38812 * 120.00277 * 41.18721 * 24 23 22 27 27 N 1.31614 * 120.00488 * 214.88125 * 26 24 23 28 28 Si 1.86805 * 119.99561 * 34.88046 * 26 24 23 29 29 H 1.48498 * 109.47182 * 84.62620 * 28 26 24 30 30 H 1.48501 * 109.46955 * 204.62654 * 28 26 24 31 31 H 1.48504 * 109.47350 * 324.62550 * 28 26 24 32 32 H 1.09005 * 109.47096 * 299.64955 * 1 2 3 33 33 H 1.08998 * 109.46715 * 59.64524 * 1 2 3 34 34 H 1.08992 * 109.47223 * 179.64765 * 1 2 3 35 35 H 1.08997 * 109.49487 * 305.53044 * 4 2 1 36 36 H 1.09002 * 109.49604 * 65.59646 * 4 2 1 37 37 H 0.96999 * 120.00402 * 335.00088 * 7 5 4 38 38 H 1.08005 * 119.42923 * 359.97438 * 11 10 8 39 39 H 0.96701 * 113.99590 * 269.96845 * 17 16 14 40 40 H 1.07996 * 120.97140 * 359.90198 * 20 19 18 41 41 H 1.09001 * 109.68308 * 178.74572 * 21 5 4 42 42 H 1.08999 * 109.47992 * 58.54949 * 21 5 4 43 43 H 1.09001 * 109.59051 * 294.72183 * 22 21 5 44 44 H 1.09004 * 109.58901 * 174.44009 * 22 21 5 45 45 H 0.96994 * 120.00459 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8480 -1.1701 6 1 4.0062 0.1472 -1.0993 7 7 4.0651 -1.5162 -2.3751 8 6 5.3294 -1.3027 -2.7906 9 8 6.0569 -0.5561 -2.1651 10 6 5.8309 -1.9758 -4.0057 11 6 5.0006 -2.8363 -4.7320 12 7 5.4318 -3.4435 -5.8152 13 6 6.6645 -3.2708 -6.2686 14 7 7.3558 -3.7725 -7.3509 15 1 7.0120 -4.3910 -8.0144 16 6 8.6122 -3.2397 -7.3183 17 8 9.5874 -3.4953 -8.2202 18 7 8.7336 -2.4461 -6.2867 19 6 7.5638 -2.4222 -5.5955 20 6 7.1392 -1.7574 -4.4460 21 6 3.9594 -1.6674 0.0655 22 6 3.4650 -0.9470 1.3237 23 7 2.0225 -0.6995 1.1945 24 6 1.1537 -1.1126 2.1690 25 1 0.2056 -1.5520 1.8962 26 6 1.4915 -0.9666 3.5075 27 7 1.1105 -1.8707 4.3848 28 14 2.4869 0.5131 4.0634 29 1 1.5752 1.6597 4.3073 30 1 3.2103 0.1805 5.3169 31 1 3.4666 0.8756 3.0079 32 1 -0.3633 0.5084 0.8932 33 1 -0.3633 0.5193 -0.8868 34 1 -0.3633 -1.0276 -0.0063 35 1 1.6030 -1.7253 -1.2912 36 1 1.7656 -0.1671 -2.1369 37 1 3.4848 -2.1122 -2.8740 38 1 3.9880 -3.0053 -4.3964 39 1 10.1471 -4.2499 -7.9910 40 1 7.8029 -1.0953 -3.9097 41 1 5.0435 -1.7715 0.1082 42 1 3.5007 -2.6545 0.0076 43 1 3.9903 0.0020 1.4317 44 1 3.6520 -1.5697 2.1987 45 1 1.3469 -1.7689 5.3200 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947469062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:18 Heat of formation + Delta-G solvation = 12.790194 kcal Electronic energy + Delta-G solvation = -29513.554144 eV Core-core repulsion = 25339.033123 eV Total energy + Delta-G solvation = -4174.521020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.59144 -41.28161 -39.88196 -39.13249 -37.90781 -36.15253 -34.92958 -34.25442 -33.23981 -32.66001 -31.83452 -30.33451 -28.00594 -26.59889 -25.35730 -24.84419 -23.93596 -23.09199 -22.51175 -21.57268 -21.05639 -20.38788 -19.41625 -19.16758 -18.30326 -17.85854 -17.50305 -17.14116 -16.81517 -16.42868 -16.24758 -16.09775 -15.54403 -15.32326 -15.13193 -14.85476 -14.76829 -14.64172 -14.36188 -14.21875 -13.90158 -13.44496 -13.41258 -13.28650 -12.76627 -12.63457 -12.51098 -12.47103 -12.38407 -12.17975 -12.02666 -11.87730 -11.60015 -11.54543 -11.39956 -11.09089 -10.48052 -10.42570 -10.25363 -9.97442 -9.69933 -8.59005 -8.21644 -5.46056 -0.55183 -0.39709 0.94567 1.36178 1.38542 1.46365 1.54474 1.75121 1.96184 2.47317 2.50954 2.66693 2.98862 3.07223 3.44211 3.45633 3.59310 3.70452 3.74071 3.88804 4.05158 4.12109 4.29761 4.38090 4.48377 4.60669 4.69197 4.71751 4.77945 4.80371 4.88001 4.99413 5.09476 5.13249 5.16103 5.17836 5.19175 5.33882 5.52376 5.57548 5.66060 5.67445 5.99326 6.33388 6.34442 6.41140 6.53805 6.63125 7.07388 7.19180 7.72154 8.23127 8.98067 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026507 B = 0.002096 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.084655 B =13355.656166 C =13790.840600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.156 3.844 3 H 0.030 0.970 4 C -0.121 4.121 5 C 0.161 3.839 6 H 0.069 0.931 7 N -0.700 5.700 8 C 0.570 3.430 9 O -0.574 6.574 10 C -0.192 4.192 11 C 0.186 3.814 12 N -0.484 5.484 13 C 0.263 3.737 14 N -0.571 5.571 15 H 0.446 0.554 16 C 0.487 3.513 17 O -0.433 6.433 18 N -0.509 5.509 19 C -0.012 4.012 20 C 0.036 3.964 21 C -0.131 4.131 22 C 0.145 3.855 23 N -0.606 5.606 24 C -0.249 4.249 25 H 0.055 0.945 26 C -0.001 4.001 27 N -0.926 5.926 28 Si 0.892 3.108 29 H -0.293 1.293 30 H -0.306 1.306 31 H -0.249 1.249 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.416 0.584 38 H 0.207 0.793 39 H 0.441 0.559 40 H 0.148 0.852 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.019 0.981 44 H 0.042 0.958 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.083 -6.161 -28.818 31.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.047 0.953 4 C -0.160 4.160 5 C 0.056 3.944 6 H 0.087 0.913 7 N -0.351 5.351 8 C 0.357 3.643 9 O -0.455 6.455 10 C -0.200 4.200 11 C 0.018 3.982 12 N -0.197 5.197 13 C 0.026 3.974 14 N -0.200 5.200 15 H 0.290 0.710 16 C 0.181 3.819 17 O -0.239 6.239 18 N -0.242 5.242 19 C -0.131 4.131 20 C 0.008 3.992 21 C -0.171 4.171 22 C 0.019 3.981 23 N -0.331 5.331 24 C -0.378 4.378 25 H 0.072 0.928 26 C -0.200 4.200 27 N -0.568 5.568 28 Si 0.719 3.281 29 H -0.220 1.220 30 H -0.233 1.233 31 H -0.173 1.173 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.254 0.746 38 H 0.224 0.776 39 H 0.305 0.695 40 H 0.165 0.835 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.037 0.963 44 H 0.060 0.940 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.707 -5.351 -28.878 31.617 hybrid contribution 0.345 -0.120 1.082 1.142 sum 12.053 -5.471 -27.796 30.787 Atomic orbital electron populations 1.21685 0.94213 1.01447 1.01045 1.20780 0.94565 0.93489 0.86092 0.95272 1.22195 0.92316 1.02559 0.98911 1.20805 0.94986 0.95644 0.82964 0.91313 1.45853 1.12677 1.48440 1.28138 1.18036 0.82054 0.80614 0.83639 1.90802 1.57375 1.39139 1.58139 1.20527 0.95788 1.04650 0.99083 1.23242 0.99977 0.88105 0.86911 1.66512 1.12426 1.25487 1.15234 1.18892 0.91538 0.96706 0.90285 1.42972 1.11663 1.41346 1.23991 0.71013 1.20207 0.81741 0.91424 0.88576 1.84847 1.41271 1.56385 1.41385 1.70720 1.24235 1.22918 1.06284 1.19419 0.91900 1.02798 0.98993 1.20878 0.94351 0.93219 0.90728 1.22302 0.99721 0.99781 0.95277 1.21175 0.84332 0.96459 0.96180 1.44567 1.02187 1.65972 1.20404 1.18506 1.01578 1.32826 0.84905 0.92783 1.26050 0.98786 0.98687 0.96473 1.70150 1.50219 1.33024 1.03450 0.86580 0.79694 0.84171 0.77630 1.22001 1.23294 1.17323 0.94377 0.90239 0.93385 0.90511 0.88583 0.74598 0.77640 0.69485 0.83450 0.92586 0.91526 0.96297 0.93973 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 8.07 71.98 0.58 -3.57 16 2 C 0.16 5.45 3.50 44.97 0.16 5.61 16 3 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.12 -3.11 4.84 30.67 0.15 -2.96 16 5 C 0.16 4.49 2.42 45.12 0.11 4.60 16 6 H 0.07 2.22 7.58 -2.39 -0.02 2.20 16 7 N -0.70 -14.67 5.03 -444.94 -2.24 -16.90 16 8 C 0.57 14.21 7.74 86.74 0.67 14.88 16 9 O -0.57 -19.53 16.06 -3.94 -0.06 -19.60 16 10 C -0.19 -3.88 5.89 -20.01 -0.12 -4.00 16 11 C 0.19 2.79 10.69 85.16 0.91 3.70 16 12 N -0.48 -8.26 10.36 -191.61 -1.99 -10.25 16 13 C 0.26 4.70 8.45 133.83 1.13 5.83 16 14 N -0.57 -6.42 6.23 -307.00 -1.91 -8.33 16 15 H 0.45 1.92 8.96 -92.70 -0.83 1.09 16 16 C 0.49 6.49 9.39 179.72 1.69 8.18 16 17 O -0.43 -2.72 13.63 -85.51 -1.17 -3.88 16 18 N -0.51 -10.71 11.32 -306.40 -3.47 -14.18 16 19 C -0.01 -0.25 7.22 39.42 0.28 0.03 16 20 C 0.04 0.81 9.75 22.92 0.22 1.04 16 21 C -0.13 -4.44 5.68 30.77 0.17 -4.26 16 22 C 0.14 6.16 4.59 86.36 0.40 6.56 16 23 N -0.61 -26.89 2.47 -675.23 -1.67 -28.56 16 24 C -0.25 -13.22 8.42 84.03 0.71 -12.51 16 25 H 0.05 3.10 6.83 -2.91 -0.02 3.08 16 26 C 0.00 -0.07 4.82 84.86 0.41 0.33 16 27 N -0.93 -56.28 13.97 21.65 0.30 -55.98 16 28 Si 0.89 44.96 27.39 68.60 1.88 46.84 16 29 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 30 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 31 H -0.25 -11.98 5.24 99.48 0.52 -11.46 16 32 H 0.04 1.43 7.68 -2.38 -0.02 1.42 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.65 7.42 -2.39 -0.02 1.63 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.42 5.44 6.64 -92.71 -0.62 4.83 16 38 H 0.21 1.48 6.39 -2.91 -0.02 1.46 16 39 H 0.44 -2.30 9.06 -74.06 -0.67 -2.98 16 40 H 0.15 3.55 7.72 -2.91 -0.02 3.53 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.02 0.84 6.71 -2.39 -0.02 0.82 16 44 H 0.04 2.00 7.01 -2.38 -0.02 1.98 16 45 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -79.52 366.54 -4.06 -83.59 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -1.22 Total: 3.79 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: 7.47 Total: 23.46 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -10.97 Total: -134.19 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -1.23 Total: -23.48 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -79.52 -4.06 -83.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947469062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.377 kcal (2) G-P(sol) polarization free energy of solvation -79.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds