Wall clock time and date at job start Wed Apr 1 2020 05:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.58870 * 2 1 4 4 C 1.53195 * 109.58192 * 239.71098 * 2 1 3 5 5 C 1.53038 * 109.31267 * 185.43388 * 4 2 1 6 6 H 1.09000 * 109.46522 * 301.36803 * 5 4 2 7 7 N 1.46500 * 109.46151 * 181.38954 * 5 4 2 8 8 C 1.34779 * 120.00085 * 154.97793 * 7 5 4 9 9 O 1.21684 * 119.99671 * 0.02562 * 8 7 5 10 10 C 1.46812 * 120.00160 * 180.02562 * 8 7 5 11 11 C 1.41306 * 126.50261 * 0.02562 * 10 8 7 12 12 N 1.30367 * 108.46145 * 180.02562 * 11 10 8 13 13 N 1.39983 * 109.31362 * 0.02562 * 12 11 10 14 14 C 1.35995 * 108.16551 * 359.97438 * 13 12 11 15 15 N 1.37177 * 120.55562 * 180.02562 * 14 13 12 16 16 H 0.96997 * 119.87676 * 180.02562 * 15 14 13 17 17 C 1.36358 * 120.23735 * 359.97438 * 15 14 13 18 18 C 1.35241 * 119.83140 * 0.02562 * 17 15 14 19 19 C 1.34859 * 131.93345 * 180.02562 * 13 12 11 20 20 O 1.21819 * 120.10669 * 359.97438 * 19 13 12 21 21 C 1.53043 * 109.52361 * 61.37486 * 5 4 2 22 22 C 1.53186 * 109.31671 * 298.61676 * 21 5 4 23 23 N 1.46922 * 109.70459 * 120.35783 * 2 1 3 24 24 C 1.36940 * 120.62911 * 353.44303 * 23 2 1 25 25 H 1.08001 * 120.00446 * 41.19622 * 24 23 2 26 26 C 1.38820 * 119.99665 * 221.19872 * 24 23 2 27 27 N 1.31619 * 119.99574 * 214.88341 * 26 24 23 28 28 Si 1.86797 * 120.00078 * 34.89073 * 26 24 23 29 29 H 1.48499 * 109.47493 * 84.62078 * 28 26 24 30 30 H 1.48501 * 109.46877 * 204.62504 * 28 26 24 31 31 H 1.48502 * 109.46933 * 324.62134 * 28 26 24 32 32 H 1.08993 * 109.47979 * 180.28654 * 1 2 3 33 33 H 1.09005 * 109.46590 * 300.28768 * 1 2 3 34 34 H 1.08999 * 109.47102 * 60.28162 * 1 2 3 35 35 H 1.09003 * 109.49149 * 65.49188 * 4 2 1 36 36 H 1.08988 * 109.50321 * 305.39388 * 4 2 1 37 37 H 0.97000 * 119.99809 * 334.97460 * 7 5 4 38 38 H 1.07997 * 125.76855 * 0.02562 * 11 10 8 39 39 H 1.08004 * 120.07964 * 179.97438 * 17 15 14 40 40 H 1.08005 * 120.14624 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.49432 * 58.58540 * 21 5 4 42 42 H 1.09001 * 109.49909 * 178.67152 * 21 5 4 43 43 H 1.09007 * 109.59596 * 294.86647 * 22 21 5 44 44 H 1.09003 * 109.70620 * 174.50389 * 22 21 5 45 45 H 0.97005 * 119.99825 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7280 -1.2463 5 6 3.5677 -0.8435 -1.1730 6 1 4.0045 0.1526 -1.1020 7 7 4.0652 -1.5098 -2.3791 8 6 5.3284 -1.2932 -2.7963 9 8 6.0557 -0.5445 -2.1708 10 6 5.8268 -1.9605 -4.0053 11 6 5.1055 -2.8510 -4.8319 12 7 5.8844 -3.2341 -5.8046 13 7 7.1356 -2.6225 -5.6641 14 6 7.1012 -1.8365 -4.5547 15 7 8.2045 -1.1139 -4.1775 16 1 8.1691 -0.5568 -3.3843 17 6 9.3509 -1.1767 -4.9131 18 6 9.3992 -1.9543 -6.0186 19 6 8.2619 -2.6943 -6.4023 20 8 8.2967 -3.3967 -7.3970 21 6 3.9599 -1.6611 0.0598 22 6 3.4685 -0.9438 1.3210 23 7 2.0254 -0.6991 1.1935 24 6 1.1585 -1.1144 2.1689 25 1 0.2109 -1.5555 1.8971 26 6 1.4978 -0.9684 3.5070 27 7 1.1197 -1.8738 4.3843 28 14 2.4908 0.5131 4.0626 29 1 1.5771 1.6576 4.3083 30 1 3.2164 0.1811 5.3150 31 1 3.4684 0.8781 3.0060 32 1 -0.3635 -1.0275 0.0051 33 1 -0.3633 0.5183 0.8875 34 1 -0.3633 0.5094 -0.8925 35 1 1.7637 -0.1655 -2.1371 36 1 1.6048 -1.7246 -1.2922 37 1 3.4856 -2.1070 -2.8774 38 1 4.0820 -3.1618 -4.6830 39 1 10.2179 -0.6064 -4.6140 40 1 10.3047 -2.0082 -6.6047 41 1 3.5030 -2.6491 0.0016 42 1 5.0444 -1.7632 0.0988 43 1 3.9920 0.0062 1.4287 44 1 3.6577 -1.5665 2.1954 45 1 1.3571 -1.7720 5.3194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947787748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:52 Heat of formation + Delta-G solvation = 60.266323 kcal Electronic energy + Delta-G solvation = -30049.509923 eV Core-core repulsion = 25877.047622 eV Total energy + Delta-G solvation = -4172.462301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.13027 -39.96221 -39.08445 -38.43002 -37.75020 -34.73208 -33.34689 -32.41942 -31.95557 -31.65494 -30.54764 -29.46243 -26.58302 -25.15900 -24.90326 -24.04764 -22.91814 -22.36184 -21.17313 -20.35420 -19.69687 -19.18126 -18.56974 -17.85991 -17.21832 -17.09915 -16.43691 -16.18112 -15.84302 -15.07111 -14.88323 -14.51625 -14.32963 -14.15358 -14.03508 -13.94432 -13.73500 -13.63977 -13.55871 -13.31418 -13.07462 -12.62038 -12.07808 -11.74870 -11.55665 -11.31388 -11.05561 -10.99416 -10.91406 -10.62000 -10.51776 -10.45874 -10.30461 -10.13121 -10.02729 -9.99393 -9.81335 -9.48115 -8.92652 -8.47114 -8.37242 -6.73630 -6.09953 -3.40381 0.33123 0.51988 1.43014 1.71430 2.04238 2.81282 3.13430 3.23156 3.40084 3.50593 3.56116 3.64017 3.95893 4.21579 4.27628 4.52903 4.56604 4.80941 4.89150 4.94260 5.03872 5.19771 5.24103 5.40853 5.57936 5.62536 5.78349 5.81447 6.00960 6.04962 6.15309 6.21280 6.24836 6.29681 6.40257 6.42121 6.44922 6.53491 6.59219 6.68542 6.83828 6.87963 7.00821 7.09400 7.36710 7.54037 8.01757 8.18610 8.40882 8.98757 9.70686 10.19391 11.05452 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022635 B = 0.002374 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.740634 B =11790.132280 C =12402.205456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.168 3.832 3 H 0.028 0.972 4 C -0.135 4.135 5 C 0.153 3.847 6 H 0.083 0.917 7 N -0.714 5.714 8 C 0.598 3.402 9 O -0.561 6.561 10 C -0.306 4.306 11 C 0.128 3.872 12 N -0.262 5.262 13 N -0.357 5.357 14 C 0.371 3.629 15 N -0.587 5.587 16 H 0.449 0.551 17 C 0.190 3.810 18 C -0.306 4.306 19 C 0.563 3.437 20 O -0.488 6.488 21 C -0.142 4.142 22 C 0.147 3.853 23 N -0.595 5.595 24 C -0.275 4.275 25 H 0.077 0.923 26 C 0.050 3.950 27 N -0.880 5.880 28 Si 0.842 3.158 29 H -0.288 1.288 30 H -0.298 1.298 31 H -0.260 1.260 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.397 0.603 38 H 0.208 0.792 39 H 0.192 0.808 40 H 0.180 0.820 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.026 0.974 44 H 0.069 0.931 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.873 2.743 -18.343 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.062 3.938 3 H 0.045 0.955 4 C -0.175 4.175 5 C 0.050 3.950 6 H 0.101 0.899 7 N -0.362 5.362 8 C 0.386 3.614 9 O -0.441 6.441 10 C -0.324 4.324 11 C -0.063 4.063 12 N -0.078 5.078 13 N -0.158 5.158 14 C 0.146 3.854 15 N -0.205 5.205 16 H 0.291 0.709 17 C 0.062 3.938 18 C -0.335 4.335 19 C 0.361 3.639 20 O -0.359 6.359 21 C -0.182 4.182 22 C 0.021 3.979 23 N -0.320 5.320 24 C -0.403 4.403 25 H 0.094 0.906 26 C -0.153 4.153 27 N -0.518 5.518 28 Si 0.669 3.331 29 H -0.215 1.215 30 H -0.224 1.224 31 H -0.184 1.184 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.224 0.776 39 H 0.209 0.791 40 H 0.198 0.802 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.087 0.913 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.564 2.008 -19.484 24.408 hybrid contribution 0.232 1.232 1.321 1.821 sum 14.796 3.239 -18.163 23.650 Atomic orbital electron populations 1.21751 0.95084 1.01925 1.00312 1.20475 0.93713 0.93270 0.86387 0.95457 1.22368 0.93337 1.02098 0.99667 1.21035 0.94491 0.96611 0.82895 0.89873 1.45979 1.12733 1.48504 1.28975 1.16815 0.82125 0.80294 0.82187 1.90738 1.56720 1.38880 1.57789 1.19594 0.92534 1.14851 1.05379 1.24295 0.99973 0.92249 0.89736 1.77601 0.87859 1.19428 1.22942 1.48109 1.12793 1.34562 1.20310 1.18759 0.88991 0.89339 0.88290 1.41185 1.07792 1.42554 1.28935 0.70864 1.22474 0.88594 0.93425 0.89356 1.21687 1.00661 1.07736 1.03434 1.17172 0.80449 0.83109 0.83149 1.90926 1.81820 1.38853 1.24305 1.22434 0.99879 0.99976 0.95920 1.21258 0.84735 0.96838 0.95109 1.44412 1.02274 1.65265 1.20002 1.18571 1.02418 1.35063 0.84277 0.90572 1.25597 0.96819 0.96891 0.95954 1.70083 1.47120 1.31300 1.03324 0.87389 0.80749 0.86898 0.78107 1.21539 1.22446 1.18432 0.92417 0.91728 0.94271 0.92300 0.91305 0.76914 0.77566 0.79068 0.80230 0.91746 0.92596 0.95652 0.91276 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.08 37.16 0.30 -1.99 16 2 C 0.17 3.05 3.49 -67.60 -0.24 2.82 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -1.94 4.84 -26.61 -0.13 -2.07 16 5 C 0.15 2.23 2.42 -67.89 -0.16 2.06 16 6 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 7 N -0.71 -8.17 5.07 -55.03 -0.28 -8.45 16 8 C 0.60 7.33 7.76 -12.79 -0.10 7.23 16 9 O -0.56 -8.24 15.47 5.20 0.08 -8.15 16 10 C -0.31 -3.23 6.15 -104.86 -0.64 -3.87 16 11 C 0.13 1.21 11.47 -17.01 -0.20 1.01 16 12 N -0.26 -3.28 12.54 30.85 0.39 -2.90 16 13 N -0.36 -4.30 3.79 -13.82 -0.05 -4.36 16 14 C 0.37 3.76 7.78 -153.52 -1.20 2.57 16 15 N -0.59 -3.82 5.39 -11.73 -0.06 -3.88 16 16 H 0.45 2.57 7.78 -40.82 -0.32 2.25 16 17 C 0.19 0.68 11.25 -16.61 -0.19 0.50 16 18 C -0.31 -1.96 9.95 -39.60 -0.39 -2.36 16 19 C 0.56 6.66 7.69 -15.17 -0.12 6.54 16 20 O -0.49 -7.60 17.90 5.08 0.09 -7.51 16 21 C -0.14 -2.40 5.65 -26.61 -0.15 -2.55 16 22 C 0.15 3.05 4.60 -3.71 -0.02 3.03 16 23 N -0.60 -13.12 2.47 -164.77 -0.41 -13.53 16 24 C -0.28 -7.16 8.44 -15.05 -0.13 -7.28 16 25 H 0.08 2.12 6.83 -52.49 -0.36 1.76 16 26 C 0.05 1.38 4.82 -17.43 -0.08 1.29 16 27 N -0.88 -25.68 13.97 55.49 0.78 -24.90 16 28 Si 0.84 20.85 27.39 -169.99 -4.66 16.19 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 31 H -0.26 -6.18 5.24 56.52 0.30 -5.89 16 32 H 0.06 1.03 7.39 -51.93 -0.38 0.65 16 33 H 0.06 1.23 7.72 -51.93 -0.40 0.83 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.00 8.14 -51.94 -0.42 0.57 16 37 H 0.40 3.39 7.54 -40.82 -0.31 3.09 16 38 H 0.21 1.08 7.48 -52.49 -0.39 0.69 16 39 H 0.19 -0.31 8.06 -52.48 -0.42 -0.73 16 40 H 0.18 0.71 8.06 -52.48 -0.42 0.28 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.03 0.54 6.71 -51.92 -0.35 0.19 16 44 H 0.07 1.57 7.01 -51.93 -0.36 1.21 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -36.50 367.13 -7.92 -44.42 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.89 Total: 0.60 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -3.44 Total: 6.94 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.36 Total: -58.02 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.17 Total: -15.66 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.66 Total: 16.19 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.50 -7.92 -44.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947787748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.688 kcal (2) G-P(sol) polarization free energy of solvation -36.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds