Wall clock time and date at job start Wed Apr 1 2020 05:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.58870 * 2 1 4 4 C 1.53195 * 109.58192 * 239.71098 * 2 1 3 5 5 C 1.53038 * 109.31267 * 185.43388 * 4 2 1 6 6 H 1.09000 * 109.46522 * 301.36803 * 5 4 2 7 7 N 1.46500 * 109.46151 * 181.38954 * 5 4 2 8 8 C 1.34779 * 120.00085 * 154.97793 * 7 5 4 9 9 O 1.21684 * 119.99671 * 0.02562 * 8 7 5 10 10 C 1.46812 * 120.00160 * 180.02562 * 8 7 5 11 11 C 1.41306 * 126.50261 * 0.02562 * 10 8 7 12 12 N 1.30367 * 108.46145 * 180.02562 * 11 10 8 13 13 N 1.39983 * 109.31362 * 0.02562 * 12 11 10 14 14 C 1.35995 * 108.16551 * 359.97438 * 13 12 11 15 15 N 1.37177 * 120.55562 * 180.02562 * 14 13 12 16 16 H 0.96997 * 119.87676 * 180.02562 * 15 14 13 17 17 C 1.36358 * 120.23735 * 359.97438 * 15 14 13 18 18 C 1.35241 * 119.83140 * 0.02562 * 17 15 14 19 19 C 1.34859 * 131.93345 * 180.02562 * 13 12 11 20 20 O 1.21819 * 120.10669 * 359.97438 * 19 13 12 21 21 C 1.53043 * 109.52361 * 61.37486 * 5 4 2 22 22 C 1.53186 * 109.31671 * 298.61676 * 21 5 4 23 23 N 1.46922 * 109.70459 * 120.35783 * 2 1 3 24 24 C 1.36940 * 120.62911 * 353.44303 * 23 2 1 25 25 H 1.08001 * 120.00446 * 41.19622 * 24 23 2 26 26 C 1.38820 * 119.99665 * 221.19872 * 24 23 2 27 27 N 1.31619 * 119.99574 * 214.88341 * 26 24 23 28 28 Si 1.86797 * 120.00078 * 34.89073 * 26 24 23 29 29 H 1.48499 * 109.47493 * 84.62078 * 28 26 24 30 30 H 1.48501 * 109.46877 * 204.62504 * 28 26 24 31 31 H 1.48502 * 109.46933 * 324.62134 * 28 26 24 32 32 H 1.08993 * 109.47979 * 180.28654 * 1 2 3 33 33 H 1.09005 * 109.46590 * 300.28768 * 1 2 3 34 34 H 1.08999 * 109.47102 * 60.28162 * 1 2 3 35 35 H 1.09003 * 109.49149 * 65.49188 * 4 2 1 36 36 H 1.08988 * 109.50321 * 305.39388 * 4 2 1 37 37 H 0.97000 * 119.99809 * 334.97460 * 7 5 4 38 38 H 1.07997 * 125.76855 * 0.02562 * 11 10 8 39 39 H 1.08004 * 120.07964 * 179.97438 * 17 15 14 40 40 H 1.08005 * 120.14624 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.49432 * 58.58540 * 21 5 4 42 42 H 1.09001 * 109.49909 * 178.67152 * 21 5 4 43 43 H 1.09007 * 109.59596 * 294.86647 * 22 21 5 44 44 H 1.09003 * 109.70620 * 174.50389 * 22 21 5 45 45 H 0.97005 * 119.99825 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7280 -1.2463 5 6 3.5677 -0.8435 -1.1730 6 1 4.0045 0.1526 -1.1020 7 7 4.0652 -1.5098 -2.3791 8 6 5.3284 -1.2932 -2.7963 9 8 6.0557 -0.5445 -2.1708 10 6 5.8268 -1.9605 -4.0053 11 6 5.1055 -2.8510 -4.8319 12 7 5.8844 -3.2341 -5.8046 13 7 7.1356 -2.6225 -5.6641 14 6 7.1012 -1.8365 -4.5547 15 7 8.2045 -1.1139 -4.1775 16 1 8.1691 -0.5568 -3.3843 17 6 9.3509 -1.1767 -4.9131 18 6 9.3992 -1.9543 -6.0186 19 6 8.2619 -2.6943 -6.4023 20 8 8.2967 -3.3967 -7.3970 21 6 3.9599 -1.6611 0.0598 22 6 3.4685 -0.9438 1.3210 23 7 2.0254 -0.6991 1.1935 24 6 1.1585 -1.1144 2.1689 25 1 0.2109 -1.5555 1.8971 26 6 1.4978 -0.9684 3.5070 27 7 1.1197 -1.8738 4.3843 28 14 2.4908 0.5131 4.0626 29 1 1.5771 1.6576 4.3083 30 1 3.2164 0.1811 5.3150 31 1 3.4684 0.8781 3.0060 32 1 -0.3635 -1.0275 0.0051 33 1 -0.3633 0.5183 0.8875 34 1 -0.3633 0.5094 -0.8925 35 1 1.7637 -0.1655 -2.1371 36 1 1.6048 -1.7246 -1.2922 37 1 3.4856 -2.1070 -2.8774 38 1 4.0820 -3.1618 -4.6830 39 1 10.2179 -0.6064 -4.6140 40 1 10.3047 -2.0082 -6.6047 41 1 3.5030 -2.6491 0.0016 42 1 5.0444 -1.7632 0.0988 43 1 3.9920 0.0062 1.4287 44 1 3.6577 -1.5665 2.1954 45 1 1.3571 -1.7720 5.3194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947787748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:51 Heat of formation + Delta-G solvation = 32.978499 kcal Electronic energy + Delta-G solvation = -30050.693212 eV Core-core repulsion = 25877.047622 eV Total energy + Delta-G solvation = -4173.645590 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.87228 -40.95616 -40.00819 -39.16390 -39.03913 -36.03691 -34.31563 -34.05272 -33.12688 -32.54453 -31.92675 -30.43693 -28.00125 -26.58808 -25.56769 -25.18803 -23.92762 -23.65437 -22.32457 -21.45352 -21.03605 -20.08510 -19.21178 -18.64721 -18.32621 -17.95160 -17.88795 -17.18008 -16.88774 -16.62824 -16.24265 -15.91576 -15.30366 -15.11801 -14.97593 -14.96038 -14.75104 -14.53045 -14.46928 -14.34371 -14.29295 -14.22191 -13.86782 -13.27797 -12.75722 -12.63721 -12.50081 -12.40109 -12.37452 -11.99952 -11.87168 -11.77633 -11.57786 -11.53534 -11.27930 -11.24524 -10.92837 -10.75331 -10.44106 -10.00353 -9.18501 -8.58466 -8.21277 -5.46047 -0.27914 -0.16341 0.72272 0.96331 1.39274 1.45711 1.47052 1.54714 2.09467 2.18534 2.35651 2.51115 2.99412 3.03540 3.35848 3.47102 3.65008 3.71415 3.87583 3.93921 4.08246 4.19285 4.31341 4.39538 4.44237 4.53490 4.61331 4.70246 4.76655 4.84010 4.97812 5.02011 5.10472 5.13675 5.16795 5.20645 5.20962 5.36151 5.56683 5.58151 5.67219 5.67413 5.77090 5.86608 5.99535 6.33449 6.58341 6.65862 7.08056 7.26999 7.72660 8.22919 8.98634 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022635 B = 0.002374 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.740634 B =11790.132280 C =12402.205456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.158 3.842 3 H 0.032 0.968 4 C -0.122 4.122 5 C 0.165 3.835 6 H 0.073 0.927 7 N -0.702 5.702 8 C 0.603 3.397 9 O -0.586 6.586 10 C -0.320 4.320 11 C 0.146 3.854 12 N -0.313 5.313 13 N -0.369 5.369 14 C 0.370 3.630 15 N -0.577 5.577 16 H 0.456 0.544 17 C 0.226 3.774 18 C -0.322 4.322 19 C 0.543 3.457 20 O -0.549 6.549 21 C -0.129 4.129 22 C 0.145 3.855 23 N -0.607 5.607 24 C -0.251 4.251 25 H 0.051 0.949 26 C -0.003 4.003 27 N -0.928 5.928 28 Si 0.895 3.105 29 H -0.293 1.293 30 H -0.305 1.305 31 H -0.245 1.245 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.414 0.586 38 H 0.244 0.756 39 H 0.257 0.743 40 H 0.204 0.796 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.023 0.977 44 H 0.040 0.960 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.502 4.574 -19.974 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 H 0.050 0.950 4 C -0.161 4.161 5 C 0.060 3.940 6 H 0.091 0.909 7 N -0.352 5.352 8 C 0.392 3.608 9 O -0.468 6.468 10 C -0.338 4.338 11 C -0.044 4.044 12 N -0.129 5.129 13 N -0.169 5.169 14 C 0.144 3.856 15 N -0.194 5.194 16 H 0.300 0.700 17 C 0.098 3.902 18 C -0.350 4.350 19 C 0.346 3.654 20 O -0.425 6.425 21 C -0.170 4.170 22 C 0.019 3.981 23 N -0.332 5.332 24 C -0.381 4.381 25 H 0.069 0.931 26 C -0.201 4.201 27 N -0.571 5.571 28 Si 0.723 3.277 29 H -0.221 1.221 30 H -0.233 1.233 31 H -0.169 1.169 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.251 0.749 38 H 0.260 0.740 39 H 0.273 0.727 40 H 0.221 0.779 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.041 0.959 44 H 0.059 0.941 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.204 3.872 -21.145 26.920 hybrid contribution -0.257 0.704 1.807 1.957 sum 15.947 4.576 -19.338 25.479 Atomic orbital electron populations 1.21691 0.94491 1.01299 1.01010 1.20755 0.94365 0.93560 0.86083 0.95045 1.22194 0.92820 1.02285 0.98809 1.20686 0.94626 0.95740 0.82920 0.90893 1.45673 1.12909 1.48594 1.28022 1.16910 0.81893 0.79797 0.82217 1.90725 1.57387 1.40035 1.58649 1.19444 0.93117 1.15920 1.05350 1.24894 1.00927 0.90533 0.88041 1.77566 0.88862 1.21518 1.24973 1.48251 1.12888 1.34844 1.20870 1.19036 0.90018 0.88976 0.87548 1.41505 1.07570 1.41271 1.29091 0.69989 1.23422 0.88632 0.91242 0.86900 1.21908 0.99606 1.08285 1.05233 1.18229 0.81378 0.83159 0.82682 1.90883 1.82735 1.41986 1.26931 1.22240 0.99816 0.99579 0.95325 1.21188 0.84174 0.96573 0.96132 1.44566 1.02282 1.66016 1.20368 1.18503 1.01683 1.32873 0.85018 0.93129 1.26073 0.98882 0.98768 0.96390 1.70168 1.50308 1.33087 1.03491 0.86519 0.79654 0.83859 0.77688 1.22099 1.23261 1.16900 0.93651 0.94379 0.90273 0.88787 0.91000 0.74928 0.73994 0.72689 0.77905 0.92126 0.92289 0.95918 0.94111 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 8.08 71.98 0.58 -3.56 16 2 C 0.16 5.36 3.49 44.98 0.16 5.52 16 3 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 4 C -0.12 -3.05 4.84 30.67 0.15 -2.90 16 5 C 0.16 4.29 2.42 45.02 0.11 4.40 16 6 H 0.07 2.13 7.58 -2.39 -0.02 2.12 16 7 N -0.70 -13.68 5.07 -446.23 -2.26 -15.94 16 8 C 0.60 13.04 7.76 86.49 0.67 13.71 16 9 O -0.59 -15.59 15.47 -4.30 -0.07 -15.66 16 10 C -0.32 -6.04 6.15 -20.02 -0.12 -6.16 16 11 C 0.15 2.48 11.47 85.66 0.98 3.46 16 12 N -0.31 -7.73 12.54 -56.31 -0.71 -8.44 16 13 N -0.37 -8.69 3.79 -315.76 -1.20 -9.89 16 14 C 0.37 6.79 7.78 132.61 1.03 7.82 16 15 N -0.58 -5.55 5.39 -191.01 -1.03 -6.58 16 16 H 0.46 3.50 7.78 -92.71 -0.72 2.78 16 17 C 0.23 0.63 11.25 83.30 0.94 1.57 16 18 C -0.32 -3.39 9.95 22.26 0.22 -3.17 16 19 C 0.54 12.83 7.69 84.91 0.65 13.49 16 20 O -0.55 -17.97 17.90 -4.73 -0.08 -18.06 16 21 C -0.13 -4.15 5.65 30.67 0.17 -3.98 16 22 C 0.15 5.92 4.60 86.36 0.40 6.32 16 23 N -0.61 -26.32 2.47 -675.23 -1.67 -27.98 16 24 C -0.25 -13.23 8.44 84.03 0.71 -12.52 16 25 H 0.05 2.90 6.83 -2.91 -0.02 2.88 16 26 C 0.00 -0.14 4.82 84.86 0.41 0.27 16 27 N -0.93 -55.96 13.97 21.65 0.30 -55.65 16 28 Si 0.90 43.85 27.39 68.60 1.88 45.73 16 29 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 30 H -0.31 -15.23 7.11 99.48 0.71 -14.52 16 31 H -0.24 -11.24 5.24 99.48 0.52 -10.72 16 32 H 0.04 1.57 7.39 -2.39 -0.02 1.55 16 33 H 0.04 1.42 7.72 -2.38 -0.02 1.40 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.41 5.41 7.54 -92.71 -0.70 4.71 16 38 H 0.24 1.78 7.48 -2.91 -0.02 1.76 16 39 H 0.26 -2.62 8.06 -2.91 -0.02 -2.64 16 40 H 0.20 1.06 8.06 -2.91 -0.02 1.03 16 41 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 43 H 0.02 0.94 6.71 -2.38 -0.02 0.93 16 44 H 0.04 1.87 7.01 -2.39 -0.02 1.85 16 45 H 0.26 15.06 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -85.92 367.13 1.68 -84.24 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -0.55 Total: 3.98 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 7.06 Total: 24.26 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -6.56 Total: -124.48 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.15 Total: -33.72 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -85.92 1.68 -84.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947787748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.216 kcal (2) G-P(sol) polarization free energy of solvation -85.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds